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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914883
Clone id YMU001_000063_H11
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000063_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGTGTCGGCCATATGTGCCCCTTGCAATCACATTCTTAAGCACGAGCTTGCTGAGATCAA
TCTCCCATTCTTCTTTCTTCCGGCGCTCAGGGGTTTACCTTTGTTGAGTCTATCCAAGGC
AGCATCGAGATCGGCCAGATTGATCGTATCAGCCCTGACATAGCTACTAGTCTTTTTCTT
TACCTCCTCATTTTTGTCTGCTTTTACATCCCTTGCAATCTCTCCCGCTTTCTCTGGAGC
GATTGCAACATCAGAAACCTGCGCACCTCCTTCCATGGGAACTCTGACAAGGAACTTGAG
CTAAGAAGATTCTACCGTCACTGTTTCACCTGCTGGTGCCGTTACAAAACCCTAATCATC
AGAACGCAGTACTTCCTCCAGGCAGCTAAAAAAGCCGAAATTTGTGCTTACTTGACGCTT
CTTTCATATAACCCTGCTAATAGCGTAGATAGAATCAAAAACGCGCCGAGATCATCTATA
CAGGAAGATGTTGTTCACATGCGATGGT
■■Homology search results ■■ -
sp_hit_id Q8RA24
Definition sp|Q8RA24|RRF_THETN Ribosome-recycling factor OS=Thermoanaerobacter tengcongensis
Align length 34
Score (bit) 29.6
E-value 8.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914883|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_H11.
         (508 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8RA24|RRF_THETN Ribosome-recycling factor OS=Thermoanaerobac...    30   8.6  
sp|P41101|RL27_SOLTU 60S ribosomal protein L27 OS=Solanum tubero...    30   8.6  

>sp|Q8RA24|RRF_THETN Ribosome-recycling factor OS=Thermoanaerobacter
           tengcongensis GN=frr PE=3 SV=1
          Length = 184

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 255 SDVAIAPEKAGEIARDVKADKNEEVKKKTSSYVR 154
           +D+    EK GEI+ D +  + EE++K T  Y++
Sbjct: 135 NDLVKKMEKDGEISEDERKRREEEIQKLTDKYIK 168


>sp|P41101|RL27_SOLTU 60S ribosomal protein L27 OS=Solanum tuberosum
           GN=RPL27 PE=2 SV=1
          Length = 138

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 307 RFYRHCFTCWC-RYKTLIIRTQYFLQAAKKAEICAYLTLLSYNPANSVDRIKNAPRSSIQ 483
           R Y HC      RY   +IR     +A KK+ + A++ L++YN         +     + 
Sbjct: 36  RPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVV 95

Query: 484 EDVVH 498
           +DVV+
Sbjct: 96  KDVVN 100
tr_hit_id A7NWS2
Definition tr|A7NWS2|A7NWS2_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera
Align length 26
Score (bit) 44.3
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914883|Adiantum capillus-veneris mRNA, clone:
YMU001_000063_H11.
         (508 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7NWS2|A7NWS2_VITVI Chromosome chr5 scaffold_2, whole genome ...    44   0.003
tr|B6TE08|B6TE08_MAIZE ATP binding protein OS=Zea mays PE=2 SV=1       44   0.006
tr|O23334|O23334_ARATH Kinase like protein OS=Arabidopsis thalia...    43   0.008
tr|A9NXM3|A9NXM3_PICSI Putative uncharacterized protein OS=Picea...    43   0.008
tr|A7PMB2|A7PMB2_VITVI Chromosome chr14 scaffold_21, whole genom...    42   0.013
tr|A5AKP8|A5AKP8_VITVI Putative uncharacterized protein OS=Vitis...    42   0.013
tr|Q84PB0|Q84PB0_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.017
tr|Q6L5F3|Q6L5F3_ORYSJ Os05g0577700 protein OS=Oryza sativa subs...    42   0.017
tr|A2Y7U2|A2Y7U2_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.017
tr|Q9SSA4|Q9SSA4_ARATH Putative uncharacterized protein F4P13.4 ...    42   0.022
tr|Q9LUI6|Q9LUI6_ARATH Kinase-like protein OS=Arabidopsis thalia...    42   0.022
tr|Q8LQ53|Q8LQ53_ORYSJ Protein kinase 6-like (Os01g0641000 prote...    41   0.029
tr|A2WT32|A2WT32_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.029
tr|Q9FGB1|Q9FGB1_ARATH Protein kinase OS=Arabidopsis thaliana GN...    41   0.038
tr|Q8LES3|Q8LES3_ARATH Protein kinase OS=Arabidopsis thaliana PE...    41   0.038
tr|B6U656|B6U656_MAIZE ATP binding protein OS=Zea mays PE=2 SV=1       41   0.038
tr|A7PUE0|A7PUE0_VITVI Chromosome chr7 scaffold_31, whole genome...    41   0.038
tr|A5CB35|A5CB35_VITVI Putative uncharacterized protein OS=Vitis...    41   0.038
tr|B4G1F0|B4G1F0_MAIZE ATP binding protein OS=Zea mays PE=2 SV=1       40   0.065
tr|Q8LCP3|Q8LCP3_ARATH ATMRK1 OS=Arabidopsis thaliana PE=2 SV=1        39   0.15 
tr|Q75J49|Q75J49_ORYSJ cDNA, clone: J100090O16, full insert sequ...    39   0.15 
tr|Q3E6U7|Q3E6U7_ARATH Uncharacterized protein At3g63260.2 OS=Ar...    39   0.15 
tr|Q0DQ42|Q0DQ42_ORYSJ Os03g0638800 protein OS=Oryza sativa subs...    39   0.15 
tr|O22100|O22100_ARATH ATMRK1 OS=Arabidopsis thaliana GN=F16M2_1...    39   0.15 
tr|A7PD25|A7PD25_VITVI Chromosome chr17 scaffold_12, whole genom...    39   0.15 
tr|A3AKQ2|A3AKQ2_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.15 
tr|A2XJY2|A2XJY2_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.15 
tr|B6T4Q9|B6T4Q9_MAIZE ATP binding protein OS=Zea mays PE=2 SV=1       38   0.32 
tr|A6QW22|A6QW22_AJECN Predicted protein OS=Ajellomyces capsulat...    37   0.42 
tr|A5ANZ4|A5ANZ4_VITVI Putative uncharacterized protein OS=Vitis...    37   0.55 

>tr|A7NWS2|A7NWS2_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020035001
           PE=4 SV=1
          Length = 390

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 19/26 (73%), Positives = 23/26 (88%)
 Frame = -1

Query: 85  RRKKEEWEIDLSKLVLKNVIARGTYG 8
           +R KEEWEIDLSKL +K+V+A GTYG
Sbjct: 71  QRPKEEWEIDLSKLDIKHVVAHGTYG 96


>tr|B6TE08|B6TE08_MAIZE ATP binding protein OS=Zea mays PE=2 SV=1
          Length = 382

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 18/29 (62%), Positives = 25/29 (86%)
 Frame = -1

Query: 94  TPERRKKEEWEIDLSKLVLKNVIARGTYG 8
           TP +R +E+WEID +KL++K VIARGT+G
Sbjct: 62  TPLQRCREDWEIDPTKLIIKGVIARGTFG 90


>tr|O23334|O23334_ARATH Kinase like protein OS=Arabidopsis thaliana
           GN=dl3430w PE=2 SV=1
          Length = 364

 Score = 43.1 bits (100), Expect = 0.008
 Identities = 19/25 (76%), Positives = 21/25 (84%)
 Frame = -1

Query: 82  RKKEEWEIDLSKLVLKNVIARGTYG 8
           + KEEWEIDL+KL   NVIARGTYG
Sbjct: 49  KAKEEWEIDLAKLETSNVIARGTYG 73


>tr|A9NXM3|A9NXM3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 390

 Score = 43.1 bits (100), Expect = 0.008
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = -1

Query: 85  RRKKEEWEIDLSKLVLKNVIARGTYG 8
           RR KEEWEIDL KL +K++IA+GT+G
Sbjct: 70  RRPKEEWEIDLKKLDIKSIIAQGTFG 95


>tr|A7PMB2|A7PMB2_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020752001
           PE=4 SV=1
          Length = 360

 Score = 42.4 bits (98), Expect = 0.013
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = -1

Query: 106 QQR*TPERRKKEEWEIDLSKLVLKNVIARGTYG 8
           QQ   P  R  EEWEID SKLV+K+VIARGT+G
Sbjct: 39  QQEERPNTR--EEWEIDPSKLVIKSVIARGTFG 69


>tr|A5AKP8|A5AKP8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017020 PE=4 SV=1
          Length = 320

 Score = 42.4 bits (98), Expect = 0.013
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = -1

Query: 106 QQR*TPERRKKEEWEIDLSKLVLKNVIARGTYG 8
           QQ   P  R  EEWEID SKLV+K+VIARGT+G
Sbjct: 39  QQEERPNTR--EEWEIDPSKLVIKSVIARGTFG 69


>tr|Q84PB0|Q84PB0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica PE=2 SV=1
          Length = 382

 Score = 42.0 bits (97), Expect = 0.017
 Identities = 17/26 (65%), Positives = 24/26 (92%)
 Frame = -1

Query: 85  RRKKEEWEIDLSKLVLKNVIARGTYG 8
           R+++EEWEID +KLV++ VIARGT+G
Sbjct: 64  RQRREEWEIDPAKLVVRGVIARGTFG 89


>tr|Q6L5F3|Q6L5F3_ORYSJ Os05g0577700 protein OS=Oryza sativa subsp.
           japonica GN=OJ1126_B10.9 PE=4 SV=1
          Length = 381

 Score = 42.0 bits (97), Expect = 0.017
 Identities = 17/26 (65%), Positives = 24/26 (92%)
 Frame = -1

Query: 85  RRKKEEWEIDLSKLVLKNVIARGTYG 8
           R+++EEWEID +KLV++ VIARGT+G
Sbjct: 64  RQRREEWEIDPAKLVVRGVIARGTFG 89


>tr|A2Y7U2|A2Y7U2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21111 PE=4 SV=1
          Length = 381

 Score = 42.0 bits (97), Expect = 0.017
 Identities = 17/26 (65%), Positives = 24/26 (92%)
 Frame = -1

Query: 85  RRKKEEWEIDLSKLVLKNVIARGTYG 8
           R+++EEWEID +KLV++ VIARGT+G
Sbjct: 64  RQRREEWEIDPAKLVVRGVIARGTFG 89


>tr|Q9SSA4|Q9SSA4_ARATH Putative uncharacterized protein F4P13.4
           (Protein kinase like protein) (Putative uncharacterized
           protein At3g01490) (AT3g01490/F4P13_4) OS=Arabidopsis
           thaliana GN=At3g01490 PE=2 SV=1
          Length = 411

 Score = 41.6 bits (96), Expect = 0.022
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = -1

Query: 100 R*TPERRKKEEWEIDLSKLVLKNVIARGTYG 8
           R T   + + EWEID SKL++K+VIARGT+G
Sbjct: 90  RSTEVEKSRREWEIDPSKLIIKSVIARGTFG 120