BP914903
Clone id YMU001_000064_B11
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000064_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ATGCGCGGCCGCGAATGTCTATTTCAATCGAAAACCATTGTAGGTGATTCCGTTGGCTTA
ACTAAAGTACTTCATTTGCTTGCACTAGACCATTGTAGAATTTACCACTTTCGCAATCCT
ACTCTCTTATGAGTTTCTCTAGATGATGTATCTTTTAAAGTGGGTAGGAACTCCCAGATT
GGTGTCTCTCTCCCGGACTACGTTCTATGAGCTCCTTCCAAGTTTCCTCAATACCTGCTT
GTAATCTTGGACAGGACCATAGAGCACAAATGGCAGGAATGGATAGGGCTCACAGAGCAC
ATTACAAGAGCCATGGTTTAGGGATGGAGCCATCATTCATCTCTCTACACACATCACAAT
GCTTTGGATGCATTATCTGATATAGTTCATCATGAATCTTTAAACCAGTTACACAGATTA
TTCATAAACGTAGCACCACATAGCCTTATCACTCATTCCCAATCTCCAACACCCAAAACA
ACTATCCGCAACATCCACAAAATACACAAGCCTGTTCCAACCCATTATAAACATTGGAGC
AATCTACACCCACA
■■Homology search results ■■ -
sp_hit_id Q2GI92
Definition sp|Q2GI92|SYT_EHRCR Threonyl-tRNA synthetase OS=Ehrlichia chaffeensis (strain Arkansas)
Align length 133
Score (bit) 31.2
E-value 3.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914903|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_B11.
(536 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q2GI92|SYT_EHRCR Threonyl-tRNA synthetase OS=Ehrlichia chaffe... 31 3.3
sp|P80152|HRB3_XANEU Protein hrpB3 OS=Xanthomonas euvesicatoria ... 31 3.3
sp|Q7VAT8|LNT_PROMA Apolipoprotein N-acyltransferase OS=Prochlor... 30 5.7
sp|Q86WI3|NLRC5_HUMAN Protein NLRC5 OS=Homo sapiens GN=NLRC5 PE=... 30 7.4

>sp|Q2GI92|SYT_EHRCR Threonyl-tRNA synthetase OS=Ehrlichia
chaffeensis (strain Arkansas) GN=thrS PE=3 SV=1
Length = 633

Score = 31.2 bits (69), Expect = 3.3
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 10/133 (7%)
Frame = +1

Query: 142 VGRNSQIGVSLPDYVL*APSKFPQYLL---------VILDRTIEHKWQEWIGLTEHITRA 294
+GR Q G D+VL P + Y + V+L R I ++ +IG+
Sbjct: 473 IGREWQCGTLQMDFVL--PERLGAYYIGSDGKKHHPVMLHRAILGTFERFIGILIE---- 526

Query: 295 MV*GWSHHSSLYTHHNALDALSDI-VHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIR 471
HHS + A LS + + +S+N + L I H++ + K +
Sbjct: 527 ------HHSGKFPMWLAPIQLSILTISEDSINYANSLKIKAEEHNIRVELDTTNEKINYK 580

Query: 472 NIHKIHKPVPTHY 510
+ IHK VP +
Sbjct: 581 IRNHIHKKVPVFW 593


>sp|P80152|HRB3_XANEU Protein hrpB3 OS=Xanthomonas euvesicatoria
GN=hrpB3 PE=3 SV=1
Length = 253

Score = 31.2 bits (69), Expect = 3.3
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -2

Query: 304 PKPWLL*CAL*ALSIPAICALWSCPRLQAGIEETWKELIERSPGE 170
P PWL CAL AL + AL+ P QAG W+ L E G+
Sbjct: 208 PWPWLAGCAL-ALCLAGAAALYWWPNPQAGRWGGWQRLRELKKGK 251


>sp|Q7VAT8|LNT_PROMA Apolipoprotein N-acyltransferase
OS=Prochlorococcus marinus GN=lnt PE=3 SV=1
Length = 494

Score = 30.4 bits (67), Expect = 5.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2

Query: 92 FAILLSYEFL*MMYLLKWVGTPRLVSL 172
FAILLSY +L ++ L W+G P SL
Sbjct: 57 FAILLSYRWLLYLHPLTWIGVPIAFSL 83


>sp|Q86WI3|NLRC5_HUMAN Protein NLRC5 OS=Homo sapiens GN=NLRC5 PE=2
SV=2
Length = 1866

Score = 30.0 bits (66), Expect = 7.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3

Query: 168 LSPGLRSMSSFQVSSIPACNLGQDHRAQMAGMDRAHRAHYKSHGLGMEPS 317
L PG R M++ + +PAC + M G D Y +H +PS
Sbjct: 336 LLPGCRVMATSRPGKLPACLPAEAAMVHMLGFDGPRVEEYVNHFFSAQPS 385


tr_hit_id A7T588
Definition tr|A7T588|A7T588_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis
Align length 75
Score (bit) 39.7
E-value 0.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914903|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_B11.
(536 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7T588|A7T588_NEMVE Predicted protein (Fragment) OS=Nematoste... 40 0.100
tr|A7T565|A7T565_NEMVE Predicted protein OS=Nematostella vectens... 39 0.17
tr|A7S9E1|A7S9E1_NEMVE Predicted protein OS=Nematostella vectens... 39 0.17
tr|A7S711|A7S711_NEMVE Predicted protein (Fragment) OS=Nematoste... 39 0.22
tr|A8DVB5|A8DVB5_NEMVE Predicted protein OS=Nematostella vectens... 37 0.85
tr|A7SIR5|A7SIR5_NEMVE Predicted protein OS=Nematostella vectens... 36 1.1
tr|A7RGI8|A7RGI8_NEMVE Predicted protein OS=Nematostella vectens... 36 1.1
tr|B0WYZ6|B0WYZ6_CULQU Negative elongation factor B OS=Culex qui... 36 1.4
tr|A7T563|A7T563_NEMVE Predicted protein (Fragment) OS=Nematoste... 35 1.9
tr|A7SLB6|A7SLB6_NEMVE Predicted protein OS=Nematostella vectens... 35 1.9
tr|A7RGI7|A7RGI7_NEMVE Predicted protein (Fragment) OS=Nematoste... 35 2.5
tr|B0URY2|B0URY2_HAES2 RNA-directed DNA polymerase OS=Haemophilu... 34 4.2
tr|A7T7W0|A7T7W0_NEMVE Predicted protein (Fragment) OS=Nematoste... 33 7.2
tr|Q3K489|Q3K489_PSEPF Putative uncharacterized protein OS=Pseud... 33 9.3
tr|B5FG62|B5FG62_VIBFM Leucyl/phenylalanyl-tRNA--protein transfe... 33 9.3
tr|B0C307|B0C307_ACAM1 Sensor protein OS=Acaryochloris marina (s... 33 9.3
tr|Q93TW6|Q93TW6_STIAU MxaF OS=Stigmatella aurantiaca GN=mxaF PE... 33 9.3
tr|A7SLB7|A7SLB7_NEMVE Predicted protein (Fragment) OS=Nematoste... 33 9.3
tr|A8NMY9|A8NMY9_COPC7 Putative uncharacterized protein OS=Copri... 33 9.3

>tr|A7T588|A7T588_NEMVE Predicted protein (Fragment) OS=Nematostella
vectensis GN=v1g222501 PE=4 SV=1
Length = 318

Score = 39.7 bits (91), Expect = 0.100
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHKI 486
+SHH L T + A+ + HH L+ + + HS H+Q TP T I IH
Sbjct: 155 YSHHPQLSTPYTAIHTIHSYPHHTQLSTPYTAIYTI--HSFTRHTQLSTPSTAIHTIHS- 211

Query: 487 HKPVPTHYKHWSNLH 531
+ + T Y +H
Sbjct: 212 YTQLSTPYTAIHTIH 226



Score = 33.9 bits (76), Expect = 5.5
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHK- 483
+ HH+ L T + A+ + + HH A HS H+Q TP T I IH
Sbjct: 69 YPHHTQLSTPYTAIYTIHNHTHHTQPY--------TAIHSYTHHTQLSTPYTAIHTIHSY 120

Query: 484 IHKPVPTHYKHWSNLHP 534
+H P+ H + +P
Sbjct: 121 LHHTQPSTAIHTIHSYP 137


>tr|A7T565|A7T565_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g222472 PE=4 SV=1
Length = 164

Score = 38.9 bits (89), Expect = 0.17
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHKI 486
+ HH+ L T + A+ + HH L+ L+ + HS H+Q TP T IH I
Sbjct: 62 YPHHTQLSTPYTAIHTIHSYPHHTQLSMLYTAIHTI--HSYPHHTQLSTPYTPYTAIHTI 119

Query: 487 H 489
H
Sbjct: 120 H 120



Score = 34.3 bits (77), Expect = 4.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1

Query: 307 WSHHSSL---YTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNI 477
+ HH+ L YT + A+ + HH+ L+ + H+ + HSQ TP T I I
Sbjct: 100 YPHHTQLSTPYTPYTAIHTIHSYPHHQQLSTPSTAMHTI--HNNLHHSQLSTPYTPIHTI 157

Query: 478 HKI-HKP 495
H H P
Sbjct: 158 HSYPHHP 164


>tr|A7S9E1|A7S9E1_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g208806 PE=4 SV=1
Length = 584

Score = 38.9 bits (89), Expect = 0.17
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHKI 486
+ HH+ L T H A+ + +HH + F + HS H Q TP T I IH
Sbjct: 369 YPHHTQLSTPHTAIHTIHSYLHHTQPSTAIHTFHTI--HSYPHHPQLSTPSTAIHTIHSY 426

Query: 487 --HKPVPTHYKHWSNLH 531
H + T Y +H
Sbjct: 427 PPHTQLSTPYTAIYTIH 443



Score = 35.8 bits (81), Expect = 1.4
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHKI 486
+ HH+ L T + A+ + HH L+ H + HS + H+Q P T I H I
Sbjct: 350 YPHHTQLSTPYTAIYTIHSYPHHTQLSTPHTAIHTI--HSYLHHTQ---PSTAIHTFHTI 404

Query: 487 H 489
H
Sbjct: 405 H 405



Score = 35.0 bits (79), Expect = 2.5
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHKI 486
+ HH+ L T + A+ + +HH L+ + A HS + ++Q TP T I IH
Sbjct: 134 YPHHTQLSTPYTAIHTIHSYLHHPQLSTPYTAI--HAIHSHLHYTQLSTPYTAIHTIHSY 191

Query: 487 --HKPVPTHY 510
H + T Y
Sbjct: 192 PHHTQLSTPY 201


>tr|A7S711|A7S711_NEMVE Predicted protein (Fragment) OS=Nematostella
vectensis GN=v1g207814 PE=4 SV=1
Length = 383

Score = 38.5 bits (88), Expect = 0.22
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHKI 486
+ H+ L+T + A+ A+ HH L+ + A H++ +H Q TP T I IH
Sbjct: 158 YPRHTQLFTPYTAIHAIHSYPHHTQLSTPY-----TAIHTIHSHPQLSTPYTAIHTIHSY 212

Query: 487 -HKPVPT 504
H P P+
Sbjct: 213 PHHPKPS 219



Score = 36.2 bits (82), Expect = 1.1
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1

Query: 313 HHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHKIHK 492
HH+ L T + ++ + + +HH L+ + + HS H+ TP T I IH+ H
Sbjct: 71 HHTQLSTPYTSIHTIHNHIHHTQLSTPYTAIHTI--HSYPHHTHPSTPYTAIHAIHR-HT 127

Query: 493 PVPTHYK--HWSNLHP 534
+ T Y H + HP
Sbjct: 128 QLSTPYTAIHAIHSHP 143


>tr|A8DVB5|A8DVB5_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g225593 PE=4 SV=1
Length = 292

Score = 36.6 bits (83), Expect = 0.85
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Frame = +1

Query: 316 HSSLYTHHNALDALSDIVHHESLNQLHRLFINVAP--------HSLITHSQSPTPKTTIR 471
H+ L T A+ + HH L+ L+ ++ + HS + H Q TP T
Sbjct: 74 HTQLSTPSRAIHTIHSYPHHTQLSTLYTVYTAIYTIHTAIHTIHSYLHHPQLSTPYTPST 133

Query: 472 NIHKIHKPVPTHYKHWSNLHP 534
IH IH P H + ++ ++P
Sbjct: 134 AIHTIHS-YPHHTQPYTAIYP 153



Score = 33.1 bits (74), Expect = 9.3
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +1

Query: 304 GWSHHSSLYTHHNALD----ALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIR 471
G+ HH+ + HH L A+ HH L+ + A H++ H+Q TP TTI
Sbjct: 186 GYLHHT-YHPHHTQLSTPYTAIHSYPHHTRLSTPY-----TAIHTIHGHTQLSTPSTTIH 239

Query: 472 NIH 480
IH
Sbjct: 240 TIH 242


>tr|A7SIR5|A7SIR5_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g212904 PE=4 SV=1
Length = 385

Score = 36.2 bits (82), Expect = 1.1
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLF--INVAPH--SLITHSQSPTPKTTIRN 474
+ HH+ L T + + + HH L+ + I+ PH L TH+Q TP T I
Sbjct: 67 YPHHTQLSTPYTGIHTIHRYPHHTQLSTPYTAIHTIHSYPHHTQLSTHTQVSTPYTGIHT 126

Query: 475 IHKI--HKPVPTHYKHWSNLH 531
IH+ H + T Y +H
Sbjct: 127 IHRYPHHTQLSTPYTGIHTIH 147



Score = 33.9 bits (76), Expect = 5.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLN---QLHRLFINVAP-HSLITHSQSPTPKTTIRN 474
+ HH+ L T + A+ + HH L+ Q+ + + H H+Q TP T I
Sbjct: 86 YPHHTQLSTPYTAIHTIHSYPHHTQLSTHTQVSTPYTGIHTIHRYPHHTQLSTPYTGIHT 145

Query: 475 IHKI--HKPVPTHYKHWSNLH 531
IH+ H V T Y +H
Sbjct: 146 IHRYPHHTQVSTPYTGIHTIH 166



Score = 33.5 bits (75), Expect = 7.2
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLN---QLHRLFINVAP-HSLITHSQSPTPKTTIRN 474
+ HH+ LYT + + + + HH + Q+ + + HS H+Q TP T I
Sbjct: 231 YPHHTQLYTPYTDIYTIHNHPHHPQQSTHTQVSTTYTAIHTIHSYPHHTQLSTPYTGIHT 290

Query: 475 IHKI--HKPVPTHYKHWSNLH 531
IH+ H V T Y +H
Sbjct: 291 IHRYPHHTQVSTPYTAIHTIH 311


>tr|A7RGI8|A7RGI8_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g196846 PE=4 SV=1
Length = 405

Score = 36.2 bits (82), Expect = 1.1
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +1

Query: 313 HHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIH 480
HH+ L T + A+ + HH QL + HS H+Q TP TTI IH
Sbjct: 37 HHTQLSTPYTAIHTIHSYPHHTHHTQLSIAIHTI--HSYPHHTQLSTPYTTIHTIH 90



Score = 34.7 bits (78), Expect = 3.2
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHKI 486
+SH++ YT + A+ + HH N + H++ +H+Q TP TTI +I+
Sbjct: 105 YSHYTQPYTPYTAIHTIHSYPHHTQPNTPYTTI-----HTIHSHTQLSTPSTTI-HIYPH 158

Query: 487 HKPVPTHYKHWSNLH 531
+K T Y +H
Sbjct: 159 YKQPYTPYTAIHTIH 173



Score = 33.1 bits (74), Expect = 9.3
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIH-K 483
+ HH+ L T + + + H L+ + + HS H Q TP T + IH
Sbjct: 325 YPHHTQLSTPYTPIHTIHSYPRHTQLSTPYTAIYTI--HSYPHHPQLSTPSTAMHTIHNN 382

Query: 484 IHKP------VPTHYKHWSNLHP 534
+H P P H H HP
Sbjct: 383 LHHPQLSTPYTPIHTIHSYPHHP 405


>tr|B0WYZ6|B0WYZ6_CULQU Negative elongation factor B OS=Culex
quinquefasciatus GN=CpipJ_CPIJ012256 PE=4 SV=1
Length = 590

Score = 35.8 bits (81), Expect = 1.4
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Frame = +1

Query: 271 LTEHITRAMV*GWSHHSSLYTHHNALDALSDIV-----HHESLNQLHRLFINVAPHSLIT 435
+T H+ + + W H L H L L + HHE++ H+L+ ++ ++
Sbjct: 508 VTRHMLKLL---WYVHQKLPQRHGRLQTLMKALQPNAQHHENV---HKLYESLQKRVMVA 561

Query: 436 HSQSPTPKTTIRNIHKIHKPVPTHYKHW 519
H+Q P P+ + K VPT H+
Sbjct: 562 HAQEPVPEPMETDFDSPLKSVPTPGPHY 589


>tr|A7T563|A7T563_NEMVE Predicted protein (Fragment) OS=Nematostella
vectensis GN=v1g222470 PE=4 SV=1
Length = 168

Score = 35.4 bits (80), Expect = 1.9
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIH 480
+SHH+ T + A+ + HH L + + HS H Q TP TTI IH
Sbjct: 36 YSHHTQPSTPYTAIHTIHSYPHHTQLYTPYTAIHTI--HSYSHHPQLSTPSTTIHTIH 91


>tr|A7SLB6|A7SLB6_NEMVE Predicted protein OS=Nematostella vectensis
GN=v1g214050 PE=4 SV=1
Length = 251

Score = 35.4 bits (80), Expect = 1.9
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +1

Query: 307 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHKI 486
+ HH+ L T + A+ + +HH L+ + + H + S + TP T I IH
Sbjct: 106 YPHHTQLSTPYTAIHTIHSYLHHTQLSTPYTAIHTIHSHPQL--STASTPSTAIHTIHSY 163

Query: 487 --HKPVPTHYKHWSNLH 531
H + T Y +H
Sbjct: 164 PHHPQLSTPYTSIHTIH 180