NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914917
Clone id YMU001_000064_D03
Library
Length 269
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000064_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGACAAAATTGGTAACCGAAGCAGCTTAGAACAAAGTCGTACAAACTGTCTGTCAGTGAA
GGCTCGAGGTTCAAATCTCAACCAATCCTAAAGCTACATATACCCCACTAGCGGTGATTG
ATAATCACTTAGATAATTCCAATTATGTTCGCAACATCCAAAGCATCATAATCAGCAGTC
AAACTAACATAAGCCTTTGTCTGCCCCTTTGGTGTAATCAATGTGTTAACCTTCTTGGTT
AGGATGTCATACATCTTCTTCACTGCATC
■■Homology search results ■■ -
sp_hit_id Q07761
Definition sp|Q07761|RL23A_TOBAC 60S ribosomal protein L23a OS=Nicotiana tabacum
Align length 41
Score (bit) 68.2
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914917|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_D03.
         (269 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q07761|RL23A_TOBAC 60S ribosomal protein L23a OS=Nicotiana ta...    68   1e-11
sp|Q9AT35|RL23A_DAUCA 60S ribosomal protein L23a OS=Daucus carot...    68   1e-11
sp|Q9M3C3|R23A2_ARATH 60S ribosomal protein L23a-2 OS=Arabidopsi...    68   1e-11
sp|Q8LD46|R23A1_ARATH 60S ribosomal protein L23a-1 OS=Arabidopsi...    68   1e-11
sp|O22644|RL23A_FRIAG 60S ribosomal protein L23A OS=Fritillaria ...    65   8e-11
sp|P48162|R23A1_CAEEL 60S ribosomal protein L23a 1 OS=Caenorhabd...    61   2e-09
sp|P62752|RL23A_RAT 60S ribosomal protein L23a OS=Rattus norvegi...    59   8e-09
sp|P62751|RL23A_MOUSE 60S ribosomal protein L23a OS=Mus musculus...    59   8e-09
sp|P62750|RL23A_HUMAN 60S ribosomal protein L23a OS=Homo sapiens...    59   8e-09
sp|Q24JY1|RL23A_BOVIN 60S ribosomal protein L23a OS=Bos taurus G...    59   8e-09
sp|Q54BQ3|RL23A_DICDI 60S ribosomal protein L23a OS=Dictyosteliu...    58   1e-08
sp|P04456|RL25_YEAST 60S ribosomal protein L25 OS=Saccharomyces ...    57   2e-08
sp|P51997|RL25_PUCGR 60S ribosomal protein L25 OS=Puccinia grami...    55   1e-07
sp|P48045|RL25_KLULA 60S ribosomal protein L25 OS=Kluyveromyces ...    54   2e-07
sp|P41165|RL23A_TRYBB 60S ribosomal protein L23a OS=Trypanosoma ...    54   3e-07
sp|Q20647|R23A2_CAEEL 60S ribosomal protein L23a 2 OS=Caenorhabd...    53   4e-07
sp|P08792|RL25_PICJA 60S ribosomal protein L25 OS=Pichia jadinii...    53   5e-07
sp|O74391|RL25B_SCHPO 60S ribosomal protein L25-B OS=Schizosacch...    53   5e-07
sp|Q10330|RL25A_SCHPO 60S ribosomal protein L25-A OS=Schizosacch...    52   9e-07
sp|A6UV66|RL23_META3 50S ribosomal protein L23P OS=Methanococcus...    50   4e-06
sp|P54016|RL23_METJA 50S ribosomal protein L23P OS=Methanocaldoc...    50   5e-06
sp|Q4JB42|RL23_SULAC 50S ribosomal protein L23P OS=Sulfolobus ac...    49   8e-06
sp|Q8ZW50|RL23_PYRAE 50S ribosomal protein L23P OS=Pyrobaculum a...    49   8e-06
sp|Q8TY92|RL23_METKA 50S ribosomal protein L23P OS=Methanopyrus ...    48   2e-05
sp|O74095|RL23_PYRHO 50S ribosomal protein L23P OS=Pyrococcus ho...    47   3e-05
sp|Q9V1T7|RL23_PYRAB 50S ribosomal protein L23P OS=Pyrococcus ab...    47   3e-05
sp|Q5JDH1|RL23_PYRKO 50S ribosomal protein L23P OS=Pyrococcus ko...    47   4e-05
sp|Q8U000|RL23_PYRFU 50S ribosomal protein L23P OS=Pyrococcus fu...    47   4e-05
sp|Q9YFM0|RL23_AERPE 50S ribosomal protein L23P OS=Aeropyrum per...    47   4e-05
sp|O28356|RL23_ARCFU 50S ribosomal protein L23P OS=Archaeoglobus...    45   1e-04

>sp|Q07761|RL23A_TOBAC 60S ribosomal protein L23a OS=Nicotiana
           tabacum GN=RPL23A PE=2 SV=1
          Length = 154

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 34/41 (82%), Positives = 34/41 (82%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           DAVKKMYDI TKKVNTLI P G  KAYV LT DYDALDVAN
Sbjct: 109 DAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 149


>sp|Q9AT35|RL23A_DAUCA 60S ribosomal protein L23a OS=Daucus carota
           GN=RPL23A PE=2 SV=1
          Length = 154

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 34/41 (82%), Positives = 34/41 (82%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           DAVKKMYDI TKKVNTLI P G  KAYV LT DYDALDVAN
Sbjct: 109 DAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 149


>sp|Q9M3C3|R23A2_ARATH 60S ribosomal protein L23a-2 OS=Arabidopsis
           thaliana GN=RPL23AB PE=2 SV=1
          Length = 154

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 34/41 (82%), Positives = 34/41 (82%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           DAVKKMYDI TKKVNTLI P G  KAYV LT DYDALDVAN
Sbjct: 109 DAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 149


>sp|Q8LD46|R23A1_ARATH 60S ribosomal protein L23a-1 OS=Arabidopsis
           thaliana GN=RPL23AA PE=2 SV=2
          Length = 154

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 34/41 (82%), Positives = 34/41 (82%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           DAVKKMYDI TKKVNTLI P G  KAYV LT DYDALDVAN
Sbjct: 109 DAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 149


>sp|O22644|RL23A_FRIAG 60S ribosomal protein L23A OS=Fritillaria
           agrestis GN=RPL23A PE=2 SV=1
          Length = 154

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 32/40 (80%), Positives = 33/40 (82%)
 Frame = -1

Query: 266 AVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           AVKKMYDI TKKVNTLI P G  KAYV LT DYDALD+AN
Sbjct: 110 AVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDIAN 149


>sp|P48162|R23A1_CAEEL 60S ribosomal protein L23a 1
           OS=Caenorhabditis elegans GN=rpl-25.1 PE=2 SV=1
          Length = 147

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 30/41 (73%), Positives = 33/41 (80%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           DAV K+Y++   KVNTLITP  Q KAYV LTADYDALDVAN
Sbjct: 102 DAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDVAN 142


>sp|P62752|RL23A_RAT 60S ribosomal protein L23a OS=Rattus norvegicus
           GN=Rpl23a PE=2 SV=1
          Length = 156

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 29/40 (72%), Positives = 31/40 (77%)
 Frame = -1

Query: 266 AVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           AVKK+YDI   KVNTLI P G+ KAYV L  DYDALDVAN
Sbjct: 112 AVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151


>sp|P62751|RL23A_MOUSE 60S ribosomal protein L23a OS=Mus musculus
           GN=Rpl23a PE=2 SV=1
          Length = 156

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 29/40 (72%), Positives = 31/40 (77%)
 Frame = -1

Query: 266 AVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           AVKK+YDI   KVNTLI P G+ KAYV L  DYDALDVAN
Sbjct: 112 AVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151


>sp|P62750|RL23A_HUMAN 60S ribosomal protein L23a OS=Homo sapiens
           GN=RPL23A PE=1 SV=1
          Length = 156

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 29/40 (72%), Positives = 31/40 (77%)
 Frame = -1

Query: 266 AVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           AVKK+YDI   KVNTLI P G+ KAYV L  DYDALDVAN
Sbjct: 112 AVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151


>sp|Q24JY1|RL23A_BOVIN 60S ribosomal protein L23a OS=Bos taurus
           GN=RPL23A PE=2 SV=1
          Length = 156

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 29/40 (72%), Positives = 31/40 (77%)
 Frame = -1

Query: 266 AVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           AVKK+YDI   KVNTLI P G+ KAYV L  DYDALDVAN
Sbjct: 112 AVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151
tr_hit_id A5X2V2
Definition tr|A5X2V2|A5X2V2_PTEVI Ribosomal protein L23a (Fragment) OS=Pteris vittata
Align length 41
Score (bit) 77.0
E-value 4.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914917|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_D03.
         (269 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5X2V2|A5X2V2_PTEVI Ribosomal protein L23a (Fragment) OS=Pter...    77   4e-13
tr|A8J239|A8J239_CHLRE Ribosomal protein L23a OS=Chlamydomonas r...    69   1e-10
tr|A9U378|A9U378_PHYPA Predicted protein OS=Physcomitrella paten...    69   2e-10
tr|A9T0J3|A9T0J3_PHYPA Predicted protein OS=Physcomitrella paten...    69   2e-10
tr|A9S3T5|A9S3T5_PHYPA Predicted protein OS=Physcomitrella paten...    69   2e-10
tr|Q2V603|Q2V603_BRACM Putative uncharacterized protein OS=Brass...    68   2e-10
tr|A9PAS4|A9PAS4_POPTR Putative uncharacterized protein OS=Popul...    68   2e-10
tr|A8MS83|A8MS83_ARATH Uncharacterized protein At3g55280.3 OS=Ar...    68   2e-10
tr|A5ARE4|A5ARE4_VITVI Putative uncharacterized protein OS=Vitis...    68   2e-10
tr|B8LPV7|B8LPV7_PICSI Putative uncharacterized protein OS=Picea...    68   3e-10
tr|A9S4N7|A9S4N7_PHYPA Predicted protein (Fragment) OS=Physcomit...    68   3e-10
tr|A9P0C6|A9P0C6_PICSI Putative uncharacterized protein OS=Picea...    68   3e-10
tr|A9NTI1|A9NTI1_PICSI Putative uncharacterized protein OS=Picea...    68   3e-10
tr|A9NPD2|A9NPD2_PICSI Putative uncharacterized protein OS=Picea...    68   3e-10
tr|A9NRT2|A9NRT2_PICSI Putative uncharacterized protein OS=Picea...    67   4e-10
tr|Q9LWB2|Q9LWB2_SPIOL Ribosomal protein L23 OS=Spinacia olerace...    67   6e-10
tr|A7PJ11|A7PJ11_VITVI Chromosome chr13 scaffold_17, whole genom...    67   6e-10
tr|Q9LWB3|Q9LWB3_SPIOL Ribosomal protein L23 OS=Spinacia olerace...    66   7e-10
tr|B7FGR0|B7FGR0_MEDTR Putative uncharacterized protein OS=Medic...    66   7e-10
tr|A9P8I1|A9P8I1_POPTR Putative uncharacterized protein OS=Popul...    66   1e-09
tr|Q3HRX7|Q3HRX7_SOLTU Ribosomal protein L25-like protein OS=Sol...    65   1e-09
tr|Q94CM9|Q94CM9_ORYSJ Putative 60S ribosomal protein L23A (Puta...    65   2e-09
tr|Q7XT72|Q7XT72_ORYSA OSJNBa0029H02.21 protein OS=Oryza sativa ...    65   2e-09
tr|Q0JBZ7|Q0JBZ7_ORYSJ Os04g0501000 protein OS=Oryza sativa subs...    65   2e-09
tr|Q01I92|Q01I92_ORYSA H0311C03.2 protein OS=Oryza sativa GN=H03...    65   2e-09
tr|O81229|O81229_MAIZE Ribosomal protein L25 (Fragment) OS=Zea m...    65   2e-09
tr|B8ARB0|B8ARB0_ORYSI Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|B6UHJ9|B6UHJ9_MAIZE 60S ribosomal protein L23a OS=Zea mays PE...    65   2e-09
tr|B6UE09|B6UE09_MAIZE 60S ribosomal protein L23a OS=Zea mays PE...    65   2e-09
tr|B6TN30|B6TN30_MAIZE 60S ribosomal protein L23a OS=Zea mays PE...    65   2e-09

>tr|A5X2V2|A5X2V2_PTEVI Ribosomal protein L23a (Fragment) OS=Pteris
           vittata PE=2 SV=1
          Length = 128

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 38/41 (92%), Positives = 38/41 (92%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           DAVKKMYDI TKKVNTLITPKGQ KAYV LTADYDALDVAN
Sbjct: 83  DAVKKMYDIQTKKVNTLITPKGQKKAYVRLTADYDALDVAN 123


>tr|A8J239|A8J239_CHLRE Ribosomal protein L23a OS=Chlamydomonas
           reinhardtii GN=RPL23a PE=3 SV=1
          Length = 147

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 33/41 (80%), Positives = 35/41 (85%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           DAV +MYD+ TKKVNTLI P GQ KAYV LTADYDALDVAN
Sbjct: 102 DAVSRMYDVQTKKVNTLIRPDGQKKAYVCLTADYDALDVAN 142


>tr|A9U378|A9U378_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_200781 PE=3 SV=1
          Length = 152

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 34/41 (82%), Positives = 35/41 (85%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           +AVKKMYDI TKKVNTLI P G  KAYV LTADYDALDVAN
Sbjct: 107 EAVKKMYDIQTKKVNTLIRPDGAKKAYVRLTADYDALDVAN 147


>tr|A9T0J3|A9T0J3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_190449 PE=3 SV=1
          Length = 155

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 34/41 (82%), Positives = 35/41 (85%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           +AVKKMYDI TKKVNTLI P G  KAYV LTADYDALDVAN
Sbjct: 110 EAVKKMYDIQTKKVNTLIRPDGAKKAYVRLTADYDALDVAN 150


>tr|A9S3T5|A9S3T5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_208348 PE=3 SV=1
          Length = 156

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 34/41 (82%), Positives = 35/41 (85%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           +AVKKMYDI TKKVNTLI P G  KAYV LTADYDALDVAN
Sbjct: 111 EAVKKMYDIQTKKVNTLIRPDGAKKAYVRLTADYDALDVAN 151


>tr|Q2V603|Q2V603_BRACM Putative uncharacterized protein OS=Brassica
           campestris PE=2 SV=1
          Length = 154

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 34/41 (82%), Positives = 34/41 (82%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           DAVKKMYDI TKKVNTLI P G  KAYV LT DYDALDVAN
Sbjct: 109 DAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 149


>tr|A9PAS4|A9PAS4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 153

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 34/41 (82%), Positives = 34/41 (82%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           DAVKKMYDI TKKVNTLI P G  KAYV LT DYDALDVAN
Sbjct: 108 DAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 148


>tr|A8MS83|A8MS83_ARATH Uncharacterized protein At3g55280.3
           OS=Arabidopsis thaliana GN=At3g55280 PE=3 SV=1
          Length = 148

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 34/41 (82%), Positives = 34/41 (82%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           DAVKKMYDI TKKVNTLI P G  KAYV LT DYDALDVAN
Sbjct: 103 DAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 143


>tr|A5ARE4|A5ARE4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003139 PE=3 SV=1
          Length = 156

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 34/41 (82%), Positives = 34/41 (82%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           DAVKKMYDI TKKVNTLI P G  KAYV LT DYDALDVAN
Sbjct: 111 DAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 151


>tr|B8LPV7|B8LPV7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 154

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 34/41 (82%), Positives = 34/41 (82%)
 Frame = -1

Query: 269 DAVKKMYDILTKKVNTLITPKGQTKAYVSLTADYDALDVAN 147
           DAVKKMYDI TKKVNTLI P G  KAYV LT DYDALDVAN
Sbjct: 109 DAVKKMYDIQTKKVNTLIRPDGLKKAYVRLTPDYDALDVAN 149