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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914929
Clone id YMU001_000064_E04
Library
Length 517
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000064_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGAGAAGAGCCTGCATGTCTCAAAGGAAGAGCGTGGCATTCATGCTTTCGCGCGCTGCT
ACAAATCCTTCCTTCAGTGTGAGATGGAGCTTCTCTTCTGCAGGTGCTGCTAATGCCGCT
CGTCTGAATTTGACAGACAGGAAACTTGAATCCTCTTCTCAATGTGGGGTTAAAGCTTCT
ACAAGAGGGCAGGTTCAGGGTCAGCCACAAACTTCAGGAGTTGATTGGATGGAAGGCTTG
GAAAATATTCAGCTTATCAACACGGCGGTTGGAATGGAGCATTACCTTTCTAATGAAGTC
ATTGTCCTGACAGGCAACGCGTAGATCTGGGGAATAGAAAGTGAATGGATTTTTAAATGG
GCTATGGATGGCTGTTTTCATGAACAGTTTAAGAATGAAGAGTTTGTCCAGGAGTGGGGG
TATGATGGCAGCCTGACTTGGCATGCTGATGCAGCTGGTAGAGTTTCAAGACTTGCAATT
TGACGAGGGTGAGGTATGTGTGCTTTCTGCATGGGTT
■■Homology search results ■■ -
sp_hit_id Q39565
Definition sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm OS=Chlamydomonas reinhardtii
Align length 113
Score (bit) 37.4
E-value 0.042
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914929|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_E04.
         (517 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm OS=C...    37   0.042
sp|Q5PL88|YHBP_SALPA UPF0306 protein yhbP OS=Salmonella paratyph...    31   3.0  
sp|Q9SHG0|TPS3_ARATH Probable alpha,alpha-trehalose-phosphate sy...    30   8.8  
sp|P33450|FAT_DROME Cadherin-related tumor suppressor OS=Drosoph...    30   8.8  

>sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm
            OS=Chlamydomonas reinhardtii GN=ODA4 PE=3 SV=1
          Length = 4568

 Score = 37.4 bits (85), Expect = 0.042
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
 Frame = +1

Query: 40   FMLSRAATNPSFSVRWSFSSAGAANAARLNLTDRKLESSSQCGVK---------ASTRGQ 192
            F+L  +     F VRWS    GAA   +  +    L + +  G K         A TR +
Sbjct: 2181 FLLKISHVRELFVVRWSVFLLGAAGCGKTAVWRTLLRAQNSSGEKTIYQAVNPKAVTRNE 2240

Query: 193  VQGQPQTSGVDWMEGLENIQLINTAVGMEHYLSNEVIVLTGNA*IWGIESEWI 351
            + G    +  +W EGL ++   N A    +   ++ IVL G+     I++EWI
Sbjct: 2241 LYGYLHPATREWKEGLMSVTFRNMANNKTN--KHQWIVLDGD-----IDAEWI 2286


>sp|Q5PL88|YHBP_SALPA UPF0306 protein yhbP OS=Salmonella paratyphi A
           GN=yhbP PE=3 SV=1
          Length = 147

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
 Frame = +1

Query: 106 AANAARLNLTDRKLESSSQCGVKASTRGQVQGQPQT----SGVDWMEGLENIQLINTAVG 273
           A N A   LTD K   +   G  AS  G V GQP+T     GV +   +  ++   +   
Sbjct: 38  AQNVALYLLTDDKTRHAQMSGACASVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDAA 97

Query: 274 MEHYLSNEVIVLTGNA*IWGIESEWI 351
            + YL    +     A +W I  + I
Sbjct: 98  RKAYLRRFPVARVLPAPVWEIRLDEI 123


>sp|Q9SHG0|TPS3_ARATH Probable alpha,alpha-trehalose-phosphate
           synthase [UDP-forming] 3 OS=Arabidopsis thaliana GN=TPS3
           PE=3 SV=2
          Length = 730

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 124 LNLTDRKLESSSQCGV--KASTRGQVQGQPQTSGVDWMEGLENI 249
           LN  + K+  +++ G+  K +T   V   PQ   +DW++GL+N+
Sbjct: 491 LNFGEYKIWLAAENGMFLKHTTEEWVTNMPQNMNLDWVDGLKNV 534


>sp|P33450|FAT_DROME Cadherin-related tumor suppressor OS=Drosophila
            melanogaster GN=ft PE=1 SV=3
          Length = 5147

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 132  QIQTSGISSTCRREAPSHTEGRICSSARKHECHALPLRHAGS 7
            Q+Q   + S  +   P++ +G+ C   R   C++ P R+ GS
Sbjct: 4025 QVQCRRLGSDFQCMCPANRDGKHCEKERSDVCYSKPCRNGGS 4066
tr_hit_id A9RIF5
Definition tr|A9RIF5|A9RIF5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 123
Score (bit) 41.2
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914929|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_E04.
         (517 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RIF5|A9RIF5_PHYPA Predicted protein OS=Physcomitrella paten...    41   5e-04
tr|A8J1M5|A8J1M5_CHLRE Flagellar outer dynein arm heavy chain be...    37   0.45 
tr|B5NRV3|B5NRV3_SALET YD repeat protein OS=Salmonella enterica ...    36   1.3  
tr|B3YAC7|B3YAC7_SALET YD repeat protein OS=Salmonella enterica ...    36   1.3  
tr|A6EPC2|A6EPC2_9BACT UDP-N-acetylglucosamine pyrophosphorylase...    35   2.9  
tr|Q02GG8|Q02GG8_PSEAB Sensor protein OS=Pseudomonas aeruginosa ...    35   2.9  
tr|Q8RNK0|Q8RNK0_PSEAE Sensor protein OS=Pseudomonas aeruginosa ...    35   2.9  
tr|Q7WY21|Q7WY21_PSEAE Sensor protein OS=Pseudomonas aeruginosa ...    35   2.9  
tr|B4SM64|B4SM64_STRM5 Putative uncharacterized protein OS=Steno...    34   5.0  
tr|Q8RM05|Q8RM05_XANP2 GAF modulated sigma54 specific transcript...    33   6.5  
tr|B8L7R6|B8L7R6_9GAMM Putative uncharacterized protein OS=Steno...    33   6.5  
tr|A4Q965|A4Q965_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  
tr|A4Q964|A4Q964_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  
tr|A4Q962|A4Q962_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  
tr|A4Q959|A4Q959_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  
tr|A4Q957|A4Q957_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  
tr|A4Q956|A4Q956_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  
tr|A4Q955|A4Q955_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  
tr|A4Q953|A4Q953_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  
tr|A4Q951|A4Q951_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  
tr|A4Q950|A4Q950_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  
tr|A4Q949|A4Q949_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  
tr|A4Q948|A4Q948_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  
tr|A4Q946|A4Q946_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  
tr|A4Q945|A4Q945_POPTN Putative uncharacterized protein OS=Popul...    33   6.5  

>tr|A9RIF5|A9RIF5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_66553 PE=4 SV=1
          Length = 716

 Score = 41.2 bits (95), Expect(2) = 5e-04
 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
 Frame = +1

Query: 121 RLNLTDRKLESSSQCGVKASTRGQVQGQPQTSGVDWMEGLENIQLINTAVGMEHYLSNEV 300
           R+   D  ++ SS      S RG+   + +          + I+ I  A+G++       
Sbjct: 69  RVRAQDACVQFSSDGNALRSCRGEEDEEAER---------DCIERIRAAIGVDESFYGTA 119

Query: 301 IVLTGNA*IWGIESEWIFKWAMD-GCFHEQFKNEEFVQEWGYD--GSLTWHADAAGRVSR 471
             ++G   +  +E +W   W  D G F EQF   E   E G+D  G  +W   AAG  S 
Sbjct: 120 FWISGTQTLLAMEGKWQLNWRNDDGRFWEQFDGVEMTLECGFDGEGQNSWAVGAAGIRST 179

Query: 472 LAI 480
           L +
Sbjct: 180 LEL 182



 Score = 25.0 bits (53), Expect(2) = 5e-04
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 473 LQFDEGEVCVLSAWV 517
           L+ D+ EVC+L AW+
Sbjct: 180 LELDDREVCLLGAWI 194


>tr|A8J1M5|A8J1M5_CHLRE Flagellar outer dynein arm heavy chain beta
            OS=Chlamydomonas reinhardtii GN=ODA4 PE=4 SV=1
          Length = 4568

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
 Frame = +1

Query: 40   FMLSRAATNPSFSVRWSFSSAGAANAARLNLTDRKLESSSQCGVK---------ASTRGQ 192
            F+L  +     F VRWS    GAA   +  +    L + +  G K         A TR +
Sbjct: 2181 FLLKISQLRELFVVRWSVFLLGAAGCGKTAVWRTLLRAQNSSGEKTIYQAVNPKAVTRNE 2240

Query: 193  VQGQPQTSGVDWMEGLENIQLINTAVGMEHYLSNEVIVLTGNA*IWGIESEWI 351
            + G    +  +W EGL ++   N A    +   ++ IVL G+     I++EWI
Sbjct: 2241 LYGYLHPATREWKEGLMSVTFRNMANNKTN--KHQWIVLDGD-----IDAEWI 2286


>tr|B5NRV3|B5NRV3_SALET YD repeat protein OS=Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191
           GN=SeKB_A0374 PE=4 SV=1
          Length = 1499

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 337 ESEWIFKWAMDGCFHEQFKNEEFVQEWGYD--GSLTWHADAAGRVSRLA 477
           + +W +++  DG   E    +   ++W Y+  GSLT H DAAGR +  A
Sbjct: 679 DQKWQYRYTEDGQIKEVIYPDGSREQWAYNAQGSLTAHTDAAGRTTHYA 727


>tr|B3YAC7|B3YAC7_SALET YD repeat protein OS=Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188
           GN=SeKA_A4607 PE=4 SV=1
          Length = 1499

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 337 ESEWIFKWAMDGCFHEQFKNEEFVQEWGYD--GSLTWHADAAGRVSRLA 477
           + +W +++  DG   E    +   ++W Y+  GSLT H DAAGR +  A
Sbjct: 679 DQKWQYRYTEDGQIKEVIYPDGSREQWAYNAQGSLTAHTDAAGRTTHYA 727


>tr|A6EPC2|A6EPC2_9BACT UDP-N-acetylglucosamine pyrophosphorylase
           related protein OS=unidentified eubacterium SCB49
           GN=SCB49_14105 PE=4 SV=1
          Length = 229

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = -3

Query: 185 LVEALTPH*EEDSSFLSVKFRRAALAAPAEEKLHLTLKEGFV 60
           L+E L PH EED SF+SV        + AEE++  TL+ GF+
Sbjct: 108 LIEILLPHIEEDISFVSVN-----TESVAEEEVKYTLENGFI 144


>tr|Q02GG8|Q02GG8_PSEAB Sensor protein OS=Pseudomonas aeruginosa
           (strain UCBPP-PA14) GN=PA14_59800 PE=4 SV=1
          Length = 931

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 163 CGVKASTRGQVQGQPQTSGVDWMEGLENIQLINTAVGMEH 282
           C V+ S +G ++  PQ  G DW+ GL N+  ++ A+G+ H
Sbjct: 754 CRVELSPQGDME--PQAQGRDWLLGLNNLDGLHRALGLAH 791


>tr|Q8RNK0|Q8RNK0_PSEAE Sensor protein OS=Pseudomonas aeruginosa
           PE=4 SV=1
          Length = 469

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 163 CGVKASTRGQVQGQPQTSGVDWMEGLENIQLINTAVGMEH 282
           C V+ S +G ++  PQ  G DW+ GL N+  ++ A+G+ H
Sbjct: 292 CRVELSPQGDME--PQAQGRDWLLGLNNLDGLHRALGLAH 329


>tr|Q7WY21|Q7WY21_PSEAE Sensor protein OS=Pseudomonas aeruginosa
           GN=RL036 PE=4 SV=1
          Length = 931

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 163 CGVKASTRGQVQGQPQTSGVDWMEGLENIQLINTAVGMEH 282
           C V+ S +G ++  PQ  G DW+ GL N+  ++ A+G+ H
Sbjct: 754 CRVELSPQGDME--PQAQGRDWLLGLNNLNGLHRALGLAH 791


>tr|B4SM64|B4SM64_STRM5 Putative uncharacterized protein
           OS=Stenotrophomonas maltophilia (strain R551-3)
           GN=Smal_3810 PE=3 SV=1
          Length = 625

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 265 AVGMEHYLSNEVIVLTGNA*IWGIESEWIFKWAMD-GCFHEQFKNEEFVQEWGYDGSLTW 441
           A G E +LS + +   G   + G++  W     +  G + EQ +   F    G+DG L+W
Sbjct: 35  ASGGEPWLSVQRLQAEGEQSVGGLQGRWQLNQDLRAGRYAEQAQLGTFTVAQGFDGKLSW 94

Query: 442 HADAAGRVSRL 474
             D  G V  L
Sbjct: 95  RRDYGGEVGLL 105


>tr|Q8RM05|Q8RM05_XANP2 GAF modulated sigma54 specific
           transcriptional regulator, Fis family OS=Xanthobacter
           autotrophicus (strain ATCC BAA-1158 / Py2) GN=acxR PE=4
           SV=1
          Length = 631

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 162 LRRGFKFPVCQIQTSGISST--CRREAPSHTEGRICSSARKHECHALPLRHAG 10
           L+RG  +   QI T+ I +   C R    H     C+S ++  C A P+RH G
Sbjct: 113 LQRGGLWCEAQIGTNAIGTALACGRPVQIHAAEHFCASVQRWTCAAAPVRHPG 165