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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914939
Clone id YMU001_000064_F04
Library
Length 214
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000064_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACGCGGCAATCCGGAGTATGATTTGGTAACAGATGTTCAAAACCAGAAGGCTAACATCAC
TTTTGGGTAGCTGCTTGGTTTGAACCCTTAGTTAAGAAGGCAATGGTCAACTAGTGTCAA
CACTAGGCTTCCTCGAGTGGGAGGAGAGGTACATACTGTGCAGAATCTAGCTGTGAAGGT
GGGAAGTCCAACCGATGTGCTTCTGGTGGTGGAT
■■Homology search results ■■ -
sp_hit_id Q13615
Definition sp|Q13615|MTMR3_HUMAN Myotubularin-related protein 3 OS=Homo sapiens
Align length 31
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914939|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_F04.
         (199 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13615|MTMR3_HUMAN Myotubularin-related protein 3 OS=Homo sap...    31   1.7  
sp|Q8K296|MTMR3_MOUSE Myotubularin-related protein 3 OS=Mus musc...    30   4.9  

>sp|Q13615|MTMR3_HUMAN Myotubularin-related protein 3 OS=Homo sapiens
            GN=MTMR3 PE=1 SV=3
          Length = 1198

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 172  TSHLHS*ILHSMYLSSHSRKPSVDTS*PLPS 80
            ++HLHS  LH  +L SHS +PS  +S   PS
Sbjct: 981  SAHLHSRNLHHKWLHSHSGRPSATSSPDQPS 1011


>sp|Q8K296|MTMR3_MOUSE Myotubularin-related protein 3 OS=Mus musculus
            GN=Mtmr3 PE=1 SV=2
          Length = 1196

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 172  TSHLHS*ILHSMYLSSHSRKPSVDTS*PLPS 80
            ++HL+S  LH  +L+SHS +PS  +S   PS
Sbjct: 979  SAHLYSRNLHHKWLNSHSGRPSTTSSPDQPS 1009
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914939|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_F04.
         (199 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******