BP914942
Clone id YMU001_000064_F09
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000064_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AAAGACCATTCGAGGAAGCTTGTGGTCGCACCCNATGACCTCCGGAAAAGAAAACCCAAA
GTACCAGCTCTACCGAGAATTCTCTCCACCATGAGATTTGGGGGGAGTCGGCCGAAGTTG
CCAACAAAGAGATCCCCACACGTAAAAGACGACGACTCATGGGTCGTGCAGACCGGAAAC
ATAGAGCACGAGACACTGATGATCCAAGACGCATGCCAAGTGCCACTCCGCACTCGTCGT
CAGTAAAGAGTGAGTCCTTAAGTGTGAGCCATGATGCAAGTGAAAGCATGCAGTCACCAG
AAGGCAAGGAAGGGCCTGACATGGAAGCTTGGCACCAAGCAGAAAGACTTTCTGGAGATA
GCAGGTACGAGAAAAGTGAGGTGGGTTCTTACGTGGATGGTAATGAGGACATTTCCCCGA
TGAGCAGAAGAAATCGGAGAGAGCCAAAAGTGGCCGGGAAGCTTATACCTTTGTTGGAGA
GTCTGAGGACCATCTGTGCCCATAGGAG
■■Homology search results ■■ -
sp_hit_id O88278
Definition sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3 OS=Rattus norvegicus
Align length 79
Score (bit) 30.4
E-value 5.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914942|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_F09.
(508 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor ... 30 5.0
sp|Q6FW88|PMIP_CANGA Mitochondrial intermediate peptidase OS=Can... 30 6.6
sp|Q9FCD3|URE11_STRCO Urease subunit alpha 1 OS=Streptomyces coe... 30 8.4
sp|A3GHA4|LOC1_PICST 60S ribosomal subunit assembly/export prote... 30 8.4
sp|Q0VSS1|IF2_ALCBS Translation initiation factor IF-2 OS=Alcani... 30 8.4

>sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3
OS=Rattus norvegicus GN=Celsr3 PE=2 SV=1
Length = 3313

Score = 30.4 bits (67), Expect = 5.0
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = -2

Query: 426 CSSGKCP-HYHPRKNPPHFSRTCYLQKVFLLGAKLPCQALPCLLVTACFHLHHGSHLRTH 250
C+SG CP H + + FS TC+ + G C PC +C HL G H T
Sbjct: 1941 CASGPCPPHANCKDLWQTFSCTCW-PGYYGPGCVDACLLNPCQNQGSCRHLQGGPHGYTC 1999

Query: 249 SLLTTSAEWHLACVLDHQC 193
+ H +D QC
Sbjct: 2000 DCASGYFGQHCEHRMDQQC 2018


>sp|Q6FW88|PMIP_CANGA Mitochondrial intermediate peptidase
OS=Candida glabrata GN=OCT1 PE=3 SV=1
Length = 761

Score = 30.0 bits (66), Expect = 6.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2

Query: 374 K*GGFLRGW**GHFPDEQKKSERAKSGREAYTFVGESED 490
K GG W D +K + AK G EA T++G+SED
Sbjct: 724 KWGGLKNPW--SCIADVLEKPDLAKGGAEAMTYIGDSED 760


>sp|Q9FCD3|URE11_STRCO Urease subunit alpha 1 OS=Streptomyces
coelicolor GN=ureC1 PE=3 SV=1
Length = 573

Score = 29.6 bits (65), Expect = 8.4
Identities = 21/74 (28%), Positives = 31/74 (41%)
Frame = -3

Query: 233 VRSGTWHASWIISVSCSMFPVCTTHESSSFTCGDLFVGNFGRLPPNLMVERILGRAGTLG 54
V G WH +W+ + ESS G F+G + M +++ RAG LG
Sbjct: 177 VTPGAWHLAWMFAAL----------ESSPVNIG--FLGKGSTMSKESMRDQL--RAGVLG 222

Query: 53 FLFRRSXGATTSFL 12
F GAT + +
Sbjct: 223 FKIHEDWGATPAVI 236


>sp|A3GHA4|LOC1_PICST 60S ribosomal subunit assembly/export protein
LOC1 OS=Pichia stipitis GN=LOC1 PE=3 SV=1
Length = 204

Score = 29.6 bits (65), Expect = 8.4
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3

Query: 45 EKKTQSTSSTENSLHHEIWGESAEVANKEIPTRKRRRLMGRADRKHRARDTDDPRR 212
E K + E ++ G+ +E+ N+ R RR +A +K +TD PR+
Sbjct: 141 ELKKKEIERKEQQKMDKLEGKKSELKNRASVARSNRRKNAKAAKKIEDEETDQPRK 196


>sp|Q0VSS1|IF2_ALCBS Translation initiation factor IF-2
OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 /
DSM 11573) GN=infB PE=3 SV=1
Length = 898

Score = 29.6 bits (65), Expect = 8.4
Identities = 31/113 (27%), Positives = 44/113 (38%)
Frame = +3

Query: 120 ANKEIPTRKRRRLMGRADRKHRARDTDDPRRMPSATPHXXXXXXXXXXXXHDASESMQSP 299
A +E P K +R A+RK R + D+ +R A +A+
Sbjct: 185 AKEETPEEKAKR--EEAERKQR--EADEAKRKQEAEARKKAEEEAARRTAEEAARIAAEL 240

Query: 300 EGKEGPDMEAWHQAERLSGDSRYEKSEVGSYVDGNEDISPMSRRNRREPKVAG 458
E + G E E G S ++ SY + SRR RR+PKVAG
Sbjct: 241 E-QRGEQEEKKPAVEDDKGSSIVNAAQEASY----QREERQSRRRRRKPKVAG 288


tr_hit_id A9T0X0
Definition tr|A9T0X0|A9T0X0_PHYPA Single bromodomain-containing protein OS=Physcomitrella patens subsp. patens
Align length 50
Score (bit) 55.1
E-value 2.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914942|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_F09.
(508 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9T0X0|A9T0X0_PHYPA Single bromodomain-containing protein OS=... 55 2e-06
tr|Q2U4B5|Q2U4B5_ASPOR Nuclear localization sequence binding pro... 37 0.54
tr|B8NTS2|B8NTS2_ASPFL Nucleolin protein Nsr1, putative OS=Asper... 37 0.71
tr|A3KJ05|A3KJ05_STRAM Putative sensor histidine-kinase OS=Strep... 35 1.6
tr|Q58EW6|Q58EW6_XENLA MGC97885 protein OS=Xenopus laevis GN=ikb... 35 2.1
tr|B6MID7|B6MID7_BRAFL Putative uncharacterized protein OS=Branc... 35 2.1
tr|B6MIC7|B6MIC7_BRAFL Putative uncharacterized protein OS=Branc... 35 2.1
tr|Q7ZV88|Q7ZV88_DANRE UV radiation resistance associated gene O... 34 3.6
tr|B1Q2E4|B1Q2E4_SYRRE NADH dehydrogenase subunit 4 OS=Syrmaticu... 34 4.7
tr|B6KKT5|B6KKT5_TOXGO DNA mismatch repair protein, putative OS=... 33 6.0
tr|B1Q2C5|B1Q2C5_SYRSO NADH dehydrogenase subunit 4 OS=Syrmaticu... 33 6.1
tr|B2VVV8|B2VVV8_PYRTR Putative uncharacterized protein OS=Pyren... 33 7.8
tr|B0X1Q2|B0X1Q2_CULQU Putative uncharacterized protein OS=Culex... 33 8.0

>tr|A9T0X0|A9T0X0_PHYPA Single bromodomain-containing protein
OS=Physcomitrella patens subsp. patens GN=BRD1504 PE=4
SV=1
Length = 1457

Score = 55.1 bits (131), Expect = 2e-06
Identities = 26/50 (52%), Positives = 37/50 (74%)
Frame = +3

Query: 357 DSRYEKSEVGSYVDGNEDISPMSRRNRREPKVAGKLIPLLESLRTICAHR 506
DS EKSE S V+G++ +SP SRR+R+EP+V+ KL+PLL+ LR H+
Sbjct: 1060 DSDVEKSEAASPVNGDDQMSPSSRRSRKEPRVSEKLLPLLDVLRKFFNHK 1109


>tr|Q2U4B5|Q2U4B5_ASPOR Nuclear localization sequence binding
protein OS=Aspergillus oryzae GN=AO090020000411 PE=4
SV=1
Length = 440

Score = 37.0 bits (84), Expect = 0.54
Identities = 30/139 (21%), Positives = 53/139 (38%)
Frame = +3

Query: 42 PEKKTQSTSSTENSLHHEIWGESAEVANKEIPTRKRRRLMGRADRKHRARDTDDPRRMPS 221
P KK + S E+ E ES++ + E + + + K +A ++ D S
Sbjct: 63 PAKKQKQESKKESKKAKESSSESSDSSESESESESEDEKPAKKEVK-KAAESSDSSESDS 121

Query: 222 ATPHXXXXXXXXXXXXHDASESMQSPEGKEGPDMEAWHQAERLSGDSRYEKSEVGSYVDG 401
+ D+SES + +E P +E + DS+ K+E
Sbjct: 122 SDEEEAPKKAAKEASDSDSSESESDSDSEESPKKSESEDSEESAKDSKKRKAE------- 174

Query: 402 NEDISPMSRRNRREPKVAG 458
ED+S ++ + E AG
Sbjct: 175 -EDVSATPKKTKTEEPAAG 192


>tr|B8NTS2|B8NTS2_ASPFL Nucleolin protein Nsr1, putative
OS=Aspergillus flavus NRRL3357 GN=AFLA_100030 PE=4 SV=1
Length = 525

Score = 36.6 bits (83), Expect = 0.71
Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 4/143 (2%)
Frame = +3

Query: 42 PEKKTQSTSSTENSLHHEIWGESAEVANKEIPTRKRRRLMGRADRKHRARDTDDPRRMPS 221
P KK + S E+ E ES++ + E + + + K +A ++ D S
Sbjct: 136 PAKKQKQESKKESKKAKESSSESSDSSESESESESEDEKPAKKEVK-KAAESSDSSESDS 194

Query: 222 ATPHXXXXXXXXXXXXHDASESMQSPEGKEGPDMEAWHQAERLSGDSRYEKSEVGSYVD- 398
+ D+SES + +E P E+ ++ S +S E SE +
Sbjct: 195 SDEEEAPKKAAKEASDSDSSESESDSDSEESPKKESSDSSDSDSSESESEDSEESAKDSK 254

Query: 399 ---GNEDISPMSRRNRREPKVAG 458
ED+S ++ + E AG
Sbjct: 255 KRKAEEDVSATPKKTKTEEPAAG 277


>tr|A3KJ05|A3KJ05_STRAM Putative sensor histidine-kinase
OS=Streptomyces ambofaciens ATCC 23877 GN=SAML0703 PE=4
SV=1
Length = 562

Score = 35.4 bits (80), Expect = 1.6
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +3

Query: 102 GESAEVANKEIPTRKRRRLMGRADRKHRARDTDDPRRMPSA 224
GESAE A E+P R+R R + A+R TD+PR P A
Sbjct: 463 GESAEPAT-ELPKRRRGRTLAAAERARSTTRTDEPRPAPPA 502


>tr|Q58EW6|Q58EW6_XENLA MGC97885 protein OS=Xenopus laevis GN=ikbkg
PE=2 SV=1
Length = 495

Score = 35.0 bits (79), Expect = 2.1
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3

Query: 39 PPEKKTQSTSSTENSLHHEIWGESAEVANKEIPTRKRRRLMGRADRKHR 185
P ++++++T T+ L + +GE E N+E+ T + L G DR HR
Sbjct: 121 PEQRQSENTILTDQRLQRKAYGEQKEPVNREVCT-ESETLQGTVDRNHR 168


>tr|B6MID7|B6MID7_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_114711 PE=4 SV=1
Length = 470

Score = 35.0 bits (79), Expect = 2.1
Identities = 33/135 (24%), Positives = 49/135 (36%)
Frame = +3

Query: 39 PPEKKTQSTSSTENSLHHEIWGESAEVANKEIPTRKRRRLMGRADRKHRARDTDDPRRMP 218
PP ++ + S ++ G +++ P RKR R+ R P R
Sbjct: 130 PPRRQRNGSDSDQSPPRK---GRQQSDSDQSPPRRKRHDSDQSPPRRKRHDSDQSPPR-- 184

Query: 219 SATPHXXXXXXXXXXXXHDASESMQSPEGKEGPDMEAWHQAERLSGDSRYEKSEVGSYVD 398
P+ HD+ QSP K G D +R DS + S D
Sbjct: 185 KRKPNSDSDQSPPRRKRHDSD---QSPPRKRGRDHGTNQSPKRRRHDSDDDLSPPRRRAD 241

Query: 399 GNEDISPMSRRNRRE 443
+ED+SP RR R +
Sbjct: 242 ADEDLSPPRRRQRHD 256


>tr|B6MIC7|B6MIC7_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_123239 PE=4 SV=1
Length = 465

Score = 35.0 bits (79), Expect = 2.1
Identities = 33/135 (24%), Positives = 49/135 (36%)
Frame = +3

Query: 39 PPEKKTQSTSSTENSLHHEIWGESAEVANKEIPTRKRRRLMGRADRKHRARDTDDPRRMP 218
PP ++ + S ++ G +++ P RKR R+ R P R
Sbjct: 95 PPRRQRNGSDSDQSPPRK---GRQQSDSDQSPPRRKRHDSDQSPPRRKRHDSDQSPPR-- 149

Query: 219 SATPHXXXXXXXXXXXXHDASESMQSPEGKEGPDMEAWHQAERLSGDSRYEKSEVGSYVD 398
P+ HD+ QSP K G D +R DS + S D
Sbjct: 150 KRKPNSDSDQSPPRRKRHDSD---QSPPRKRGRDHGTNQSPKRRRHDSDDDLSPPRRRAD 206

Query: 399 GNEDISPMSRRNRRE 443
+ED+SP RR R +
Sbjct: 207 ADEDLSPPRRRQRHD 221


>tr|Q7ZV88|Q7ZV88_DANRE UV radiation resistance associated gene
OS=Danio rerio GN=uvrag PE=2 SV=1
Length = 664

Score = 34.3 bits (77), Expect = 3.6
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = +1

Query: 115 KLPTKRSPHVKDDDSWVVQTGNIEHETLMIQDACQVPLR 231
KLP KDD S V GN H LMI Q+PLR
Sbjct: 313 KLPNSEDFQAKDDGSIAVALGNTAHLVLMISCFLQIPLR 351


>tr|B1Q2E4|B1Q2E4_SYRRE NADH dehydrogenase subunit 4 OS=Syrmaticus
reevesii GN=ND4 PE=4 SV=1
Length = 459

Score = 33.9 bits (76), Expect = 4.7
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -2

Query: 408 PHYHPRKNPPHFSRTCYLQKVFLLGAKLPCQALPCLLVTACFHLHHGSHLRTHSLLTT 235
P Y+P KN H++ + L+ L C LP +++ + HL H H R ++T
Sbjct: 44 PSYYPTKNLAHWTNIDQISAPLLV---LSCWFLPLMILASQGHLQHEPHARKQMFIST 98


>tr|B6KKT5|B6KKT5_TOXGO DNA mismatch repair protein, putative
OS=Toxoplasma gondii ME49 GN=TGME49_090640 PE=4 SV=1
Length = 1607

Score = 33.5 bits (75), Expect = 6.0
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Frame = +3

Query: 45 EKKTQSTSSTENSLHHEIWGESAEVANKEIPTRKRRRLMGRADRKHRARDTDDPRRMPSA 224
EK T+ TS ++ +A+ A +E+PTRK RR K +D +D R +
Sbjct: 65 EKATEETSQAASA-----GAAAAKNAKEEMPTRKVRRFSEGVFCKR--QDDEDAPRGAAG 117

Query: 225 TPHXXXXXXXXXXXXHDASESMQSPEGKEGPDMEAWHQAERLSGDSRYEKSEVGSYVD-G 401
+P DA + + P + + GDS +S G+ D G
Sbjct: 118 SPE----------KNKDAVQKTEMRNSTTEPTEDEKKRQRASVGDSTAARSSSGNEEDPG 167

Query: 402 NEDISPMSRRNRR 440
+ED+ + R RR
Sbjct: 168 SEDVRKLKRLRRR 180