BP914942 |
Clone id |
YMU001_000064_F09 |
Library |
YMU01 |
Length |
508 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000064_F09. |
Accession |
BP914942 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AAAGACCATTCGAGGAAGCTTGTGGTCGCACCCNATGACCTCCGGAAAAGAAAACCCAAA GTACCAGCTCTACCGAGAATTCTCTCCACCATGAGATTTGGGGGGAGTCGGCCGAAGTTG CCAACAAAGAGATCCCCACACGTAAAAGACGACGACTCATGGGTCGTGCAGACCGGAAAC ATAGAGCACGAGACACTGATGATCCAAGACGCATGCCAAGTGCCACTCCGCACTCGTCGT CAGTAAAGAGTGAGTCCTTAAGTGTGAGCCATGATGCAAGTGAAAGCATGCAGTCACCAG AAGGCAAGGAAGGGCCTGACATGGAAGCTTGGCACCAAGCAGAAAGACTTTCTGGAGATA GCAGGTACGAGAAAAGTGAGGTGGGTTCTTACGTGGATGGTAATGAGGACATTTCCCCGA TGAGCAGAAGAAATCGGAGAGAGCCAAAAGTGGCCGGGAAGCTTATACCTTTGTTGGAGA GTCTGAGGACCATCTGTGCCCATAGGAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O88278 |
Definition |
sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3 OS=Rattus norvegicus |
Align length |
79 |
Score (bit) |
30.4 |
E-value |
5.0 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T0X0 |
Definition |
tr|A9T0X0|A9T0X0_PHYPA Single bromodomain-containing protein OS=Physcomitrella patens subsp. patens |
Align length |
50 |
Score (bit) |
55.1 |
E-value |
2.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914942|Adiantum capillus-veneris mRNA, clone: YMU001_000064_F09. (508 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T0X0|A9T0X0_PHYPA Single bromodomain-containing protein OS=... 55 2e-06 tr|Q2U4B5|Q2U4B5_ASPOR Nuclear localization sequence binding pro... 37 0.54 tr|B8NTS2|B8NTS2_ASPFL Nucleolin protein Nsr1, putative OS=Asper... 37 0.71 tr|A3KJ05|A3KJ05_STRAM Putative sensor histidine-kinase OS=Strep... 35 1.6 tr|Q58EW6|Q58EW6_XENLA MGC97885 protein OS=Xenopus laevis GN=ikb... 35 2.1 tr|B6MID7|B6MID7_BRAFL Putative uncharacterized protein OS=Branc... 35 2.1 tr|B6MIC7|B6MIC7_BRAFL Putative uncharacterized protein OS=Branc... 35 2.1 tr|Q7ZV88|Q7ZV88_DANRE UV radiation resistance associated gene O... 34 3.6 tr|B1Q2E4|B1Q2E4_SYRRE NADH dehydrogenase subunit 4 OS=Syrmaticu... 34 4.7 tr|B6KKT5|B6KKT5_TOXGO DNA mismatch repair protein, putative OS=... 33 6.0 tr|B1Q2C5|B1Q2C5_SYRSO NADH dehydrogenase subunit 4 OS=Syrmaticu... 33 6.1 tr|B2VVV8|B2VVV8_PYRTR Putative uncharacterized protein OS=Pyren... 33 7.8 tr|B0X1Q2|B0X1Q2_CULQU Putative uncharacterized protein OS=Culex... 33 8.0
>tr|A9T0X0|A9T0X0_PHYPA Single bromodomain-containing protein OS=Physcomitrella patens subsp. patens GN=BRD1504 PE=4 SV=1 Length = 1457
Score = 55.1 bits (131), Expect = 2e-06 Identities = 26/50 (52%), Positives = 37/50 (74%) Frame = +3
Query: 357 DSRYEKSEVGSYVDGNEDISPMSRRNRREPKVAGKLIPLLESLRTICAHR 506 DS EKSE S V+G++ +SP SRR+R+EP+V+ KL+PLL+ LR H+ Sbjct: 1060 DSDVEKSEAASPVNGDDQMSPSSRRSRKEPRVSEKLLPLLDVLRKFFNHK 1109
>tr|Q2U4B5|Q2U4B5_ASPOR Nuclear localization sequence binding protein OS=Aspergillus oryzae GN=AO090020000411 PE=4 SV=1 Length = 440
Score = 37.0 bits (84), Expect = 0.54 Identities = 30/139 (21%), Positives = 53/139 (38%) Frame = +3
Query: 42 PEKKTQSTSSTENSLHHEIWGESAEVANKEIPTRKRRRLMGRADRKHRARDTDDPRRMPS 221 P KK + S E+ E ES++ + E + + + K +A ++ D S Sbjct: 63 PAKKQKQESKKESKKAKESSSESSDSSESESESESEDEKPAKKEVK-KAAESSDSSESDS 121
Query: 222 ATPHXXXXXXXXXXXXHDASESMQSPEGKEGPDMEAWHQAERLSGDSRYEKSEVGSYVDG 401 + D+SES + +E P +E + DS+ K+E Sbjct: 122 SDEEEAPKKAAKEASDSDSSESESDSDSEESPKKSESEDSEESAKDSKKRKAE------- 174
Query: 402 NEDISPMSRRNRREPKVAG 458 ED+S ++ + E AG Sbjct: 175 -EDVSATPKKTKTEEPAAG 192
>tr|B8NTS2|B8NTS2_ASPFL Nucleolin protein Nsr1, putative OS=Aspergillus flavus NRRL3357 GN=AFLA_100030 PE=4 SV=1 Length = 525
Score = 36.6 bits (83), Expect = 0.71 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 4/143 (2%) Frame = +3
Query: 42 PEKKTQSTSSTENSLHHEIWGESAEVANKEIPTRKRRRLMGRADRKHRARDTDDPRRMPS 221 P KK + S E+ E ES++ + E + + + K +A ++ D S Sbjct: 136 PAKKQKQESKKESKKAKESSSESSDSSESESESESEDEKPAKKEVK-KAAESSDSSESDS 194
Query: 222 ATPHXXXXXXXXXXXXHDASESMQSPEGKEGPDMEAWHQAERLSGDSRYEKSEVGSYVD- 398 + D+SES + +E P E+ ++ S +S E SE + Sbjct: 195 SDEEEAPKKAAKEASDSDSSESESDSDSEESPKKESSDSSDSDSSESESEDSEESAKDSK 254
Query: 399 ---GNEDISPMSRRNRREPKVAG 458 ED+S ++ + E AG Sbjct: 255 KRKAEEDVSATPKKTKTEEPAAG 277
>tr|A3KJ05|A3KJ05_STRAM Putative sensor histidine-kinase OS=Streptomyces ambofaciens ATCC 23877 GN=SAML0703 PE=4 SV=1 Length = 562
Score = 35.4 bits (80), Expect = 1.6 Identities = 19/41 (46%), Positives = 24/41 (58%) Frame = +3
Query: 102 GESAEVANKEIPTRKRRRLMGRADRKHRARDTDDPRRMPSA 224 GESAE A E+P R+R R + A+R TD+PR P A Sbjct: 463 GESAEPAT-ELPKRRRGRTLAAAERARSTTRTDEPRPAPPA 502
>tr|Q58EW6|Q58EW6_XENLA MGC97885 protein OS=Xenopus laevis GN=ikbkg PE=2 SV=1 Length = 495
Score = 35.0 bits (79), Expect = 2.1 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3
Query: 39 PPEKKTQSTSSTENSLHHEIWGESAEVANKEIPTRKRRRLMGRADRKHR 185 P ++++++T T+ L + +GE E N+E+ T + L G DR HR Sbjct: 121 PEQRQSENTILTDQRLQRKAYGEQKEPVNREVCT-ESETLQGTVDRNHR 168
>tr|B6MID7|B6MID7_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_114711 PE=4 SV=1 Length = 470
Score = 35.0 bits (79), Expect = 2.1 Identities = 33/135 (24%), Positives = 49/135 (36%) Frame = +3
Query: 39 PPEKKTQSTSSTENSLHHEIWGESAEVANKEIPTRKRRRLMGRADRKHRARDTDDPRRMP 218 PP ++ + S ++ G +++ P RKR R+ R P R Sbjct: 130 PPRRQRNGSDSDQSPPRK---GRQQSDSDQSPPRRKRHDSDQSPPRRKRHDSDQSPPR-- 184
Query: 219 SATPHXXXXXXXXXXXXHDASESMQSPEGKEGPDMEAWHQAERLSGDSRYEKSEVGSYVD 398 P+ HD+ QSP K G D +R DS + S D Sbjct: 185 KRKPNSDSDQSPPRRKRHDSD---QSPPRKRGRDHGTNQSPKRRRHDSDDDLSPPRRRAD 241
Query: 399 GNEDISPMSRRNRRE 443 +ED+SP RR R + Sbjct: 242 ADEDLSPPRRRQRHD 256
>tr|B6MIC7|B6MIC7_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_123239 PE=4 SV=1 Length = 465
Score = 35.0 bits (79), Expect = 2.1 Identities = 33/135 (24%), Positives = 49/135 (36%) Frame = +3
Query: 39 PPEKKTQSTSSTENSLHHEIWGESAEVANKEIPTRKRRRLMGRADRKHRARDTDDPRRMP 218 PP ++ + S ++ G +++ P RKR R+ R P R Sbjct: 95 PPRRQRNGSDSDQSPPRK---GRQQSDSDQSPPRRKRHDSDQSPPRRKRHDSDQSPPR-- 149
Query: 219 SATPHXXXXXXXXXXXXHDASESMQSPEGKEGPDMEAWHQAERLSGDSRYEKSEVGSYVD 398 P+ HD+ QSP K G D +R DS + S D Sbjct: 150 KRKPNSDSDQSPPRRKRHDSD---QSPPRKRGRDHGTNQSPKRRRHDSDDDLSPPRRRAD 206
Query: 399 GNEDISPMSRRNRRE 443 +ED+SP RR R + Sbjct: 207 ADEDLSPPRRRQRHD 221
>tr|Q7ZV88|Q7ZV88_DANRE UV radiation resistance associated gene OS=Danio rerio GN=uvrag PE=2 SV=1 Length = 664
Score = 34.3 bits (77), Expect = 3.6 Identities = 18/39 (46%), Positives = 19/39 (48%) Frame = +1
Query: 115 KLPTKRSPHVKDDDSWVVQTGNIEHETLMIQDACQVPLR 231 KLP KDD S V GN H LMI Q+PLR Sbjct: 313 KLPNSEDFQAKDDGSIAVALGNTAHLVLMISCFLQIPLR 351
>tr|B1Q2E4|B1Q2E4_SYRRE NADH dehydrogenase subunit 4 OS=Syrmaticus reevesii GN=ND4 PE=4 SV=1 Length = 459
Score = 33.9 bits (76), Expect = 4.7 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = -2
Query: 408 PHYHPRKNPPHFSRTCYLQKVFLLGAKLPCQALPCLLVTACFHLHHGSHLRTHSLLTT 235 P Y+P KN H++ + L+ L C LP +++ + HL H H R ++T Sbjct: 44 PSYYPTKNLAHWTNIDQISAPLLV---LSCWFLPLMILASQGHLQHEPHARKQMFIST 98
>tr|B6KKT5|B6KKT5_TOXGO DNA mismatch repair protein, putative OS=Toxoplasma gondii ME49 GN=TGME49_090640 PE=4 SV=1 Length = 1607
Score = 33.5 bits (75), Expect = 6.0 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 1/133 (0%) Frame = +3
Query: 45 EKKTQSTSSTENSLHHEIWGESAEVANKEIPTRKRRRLMGRADRKHRARDTDDPRRMPSA 224 EK T+ TS ++ +A+ A +E+PTRK RR K +D +D R + Sbjct: 65 EKATEETSQAASA-----GAAAAKNAKEEMPTRKVRRFSEGVFCKR--QDDEDAPRGAAG 117
Query: 225 TPHXXXXXXXXXXXXHDASESMQSPEGKEGPDMEAWHQAERLSGDSRYEKSEVGSYVD-G 401 +P DA + + P + + GDS +S G+ D G Sbjct: 118 SPE----------KNKDAVQKTEMRNSTTEPTEDEKKRQRASVGDSTAARSSSGNEEDPG 167
Query: 402 NEDISPMSRRNRR 440 +ED+ + R RR Sbjct: 168 SEDVRKLKRLRRR 180
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