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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914947
Clone id YMU001_000064_G02
Library
Length 479
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000064_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTGACACAGGCAAGACAAAACCACAATTGACCTCTTCTTTTTCAGTTACAAAAG
AGTTGACCATGGTTAACTTGGTCCTCCTTATTACAGCTCGAACATGCTGTGAAAATTTAT
GCGACACTCAACCAGTACAGCCAAGGCAGCTCTCTGAAAGCAAGACATATGTATCACAAC
AAGGCTCCACCGACAATGGTAACAAATCATATTGTCACCTCTTATGGAGACAGTCTCCAA
TTATTGGAATCTCATAAAGCAAGACCTCCGGACTGCATATAAACTGAATCAGATCCACAC
AATATTCCACCTTTAACACCAATTTTCCCCTTTTGTTGCAATAATGGGTACCTGTAAACA
CGATGTATTGGGCATTATGAGGATGTGTTTAATCTCTTAACTCCTTGTTGTAGCTCTTCC
ATGACAGCTACTTGCTGCTTTGAGCGATGCTTTGCTATTGTATGGGTGGTCATTGTTCC
■■Homology search results ■■ -
sp_hit_id O60185
Definition sp|O60185|EI2BL_SCHPO Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein OS=Schizosaccharomyces pombe
Align length 43
Score (bit) 33.1
E-value 0.67
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914947|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_G02.
         (479 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O60185|EI2BL_SCHPO Translation initiation factor eIF-2B subun...    33   0.67 
sp|Q85V94|MATK_ELAUM Maturase K OS=Elaeagnus umbellata GN=matK P...    30   5.6  
sp|O43078|SUR2_SCHPO Protein sur2 OS=Schizosaccharomyces pombe G...    30   7.4  
sp|Q3KLJ6|RUVA_CHLTA Holliday junction ATP-dependent DNA helicas...    29   9.6  
sp|P61577|REC15_HUMAN HERV-K_3q21.2 provirus Rec protein OS=Homo...    29   9.6  
sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protei...    29   9.6  
sp|A6MMS5|MATK_ILLOL Maturase K OS=Illicium oligandrum GN=matK P...    29   9.6  

>sp|O60185|EI2BL_SCHPO Translation initiation factor eIF-2B subunit
           alpha/beta/delta-like protein OS=Schizosaccharomyces
           pombe GN=SPBC23E6.10c PE=2 SV=1
          Length = 359

 Score = 33.1 bits (74), Expect = 0.67
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 97  LEHAVKIYATLNQ-YSQGSSLKARHMYHNKAPPTMVTNHIVTS 222
           LEHA   Y T  + Y+QGS L A  + H+K P T+VT+  V S
Sbjct: 183 LEHA---YCTETRPYNQGSRLTAFELVHDKIPATLVTDSTVAS 222


>sp|Q85V94|MATK_ELAUM Maturase K OS=Elaeagnus umbellata GN=matK PE=3
           SV=1
          Length = 505

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 145 LGCTG*VSHKFSQHVRAVIRRTKLTMVNSFVTEKEEV 35
           L C   +S K    VRA ++R  L ++  F TE+EE+
Sbjct: 434 LSCVKTLSRKHKSTVRAFLKRLGLGLLEEFFTEEEEI 470


>sp|O43078|SUR2_SCHPO Protein sur2 OS=Schizosaccharomyces pombe
           GN=sur2 PE=1 SV=1
          Length = 660

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 163 RHMYHNKAPPTMVTNHIVTS-YGDSLQLLESHKARPPDCI*TESDPHNIPPLTPIFPFCC 339
           + +Y   +PP+  T+ IV+S YGD+   L   K            P+  PPL P  PF  
Sbjct: 141 KQIYSKHSPPSTSTSSIVSSSYGDAPSYLAPSK------------PNRSPPLKPEDPFAS 188

Query: 340 NN 345
            N
Sbjct: 189 FN 190


>sp|Q3KLJ6|RUVA_CHLTA Holliday junction ATP-dependent DNA helicase
           ruvA OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC
           VR-571B) GN=ruvA PE=3 SV=1
          Length = 200

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -2

Query: 175 DTYVLLSESCLGCTG*VSHKFSQHVRAVIRRTKLTMVNSFVTEKEEVNCGF 23
           ++YV++    +G    +S +FS  +RA + +  L  V+S + E E V  GF
Sbjct: 14  ESYVVIESFGIGYAIMLSERFSVDLRAFMHQEVLIYVHSVIRETEHVLYGF 64


>sp|P61577|REC15_HUMAN HERV-K_3q21.2 provirus Rec protein OS=Homo
           sapiens GN=ERVK4 PE=1 SV=1
          Length = 105

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 163 RHMYHNKAPPTMVTNHIVTSYGDSLQLLESHKARPP 270
           R  +HN+AP T   N +VTS  + ++L  + KA PP
Sbjct: 14  RRRHHNRAPLTHKMNKMVTS-EEEMKLPSTKKAEPP 48


>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein
           At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
          Length = 629

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 334 KRGKLVLKVEYCVDLIQFICSPEVLLYEIPIIGDCLHKR 218
           K GKLV   +   ++IQ    P+ + Y + I G C+H R
Sbjct: 340 KEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNR 378


>sp|A6MMS5|MATK_ILLOL Maturase K OS=Illicium oligandrum GN=matK PE=3
           SV=1
          Length = 505

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 145 LGCTG*VSHKFSQHVRAVIRRTKLTMVNSFVTEKEEV 35
           L C   ++ K    VR +++R    ++  F+TEKEE+
Sbjct: 436 LSCAKTLARKHKSTVRTILKRLGSELLEEFLTEKEEI 472
tr_hit_id Q9SFC5
Definition tr|Q9SFC5|Q9SFC5_ARATH Putative GTPase activator protein OS=Arabidopsis thaliana
Align length 32
Score (bit) 41.6
E-value 0.02
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914947|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_G02.
         (479 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SFC5|Q9SFC5_ARATH Putative GTPase activator protein OS=Arab...    42   0.020
tr|Q8LGJ8|Q8LGJ8_ARATH Putative GTPase activator protein OS=Arab...    42   0.020
tr|Q1H5B2|Q1H5B2_ARATH At3g07890 (Putative GTPase activator prot...    42   0.020
tr|A7PX17|A7PX17_VITVI Chromosome chr12 scaffold_36, whole genom...    42   0.020
tr|Q6Z973|Q6Z973_ORYSJ Os08g0337700 protein OS=Oryza sativa subs...    39   0.098
tr|A3BS32|A3BS32_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.098
tr|A9NZ90|A9NZ90_PICSI Putative uncharacterized protein OS=Picea...    36   0.83 
tr|B1QYZ6|B1QYZ6_CLOBU L-fucose isomerase OS=Clostridium butyric...    35   2.4  
tr|A9RPI3|A9RPI3_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.2  
tr|B4W2J5|B4W2J5_9CYAN Putative uncharacterized protein OS=Micro...    33   5.4  
tr|A9RMF2|A9RMF2_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.0  
tr|Q5C6V0|Q5C6V0_SCHJA SJCHGC07179 protein (Fragment) OS=Schisto...    33   7.0  

>tr|Q9SFC5|Q9SFC5_ARATH Putative GTPase activator protein
           OS=Arabidopsis thaliana GN=F17A17.23 PE=4 SV=1
          Length = 389

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = -1

Query: 479 GTMTTHTIAKHRSKQQVAVMEELQQGVKRLNT 384
           G+MTT+TI+K R KQ+ AVM EL Q ++RLN+
Sbjct: 350 GSMTTNTISKQRKKQEPAVMAELDQRLRRLNS 381


>tr|Q8LGJ8|Q8LGJ8_ARATH Putative GTPase activator protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 389

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = -1

Query: 479 GTMTTHTIAKHRSKQQVAVMEELQQGVKRLNT 384
           G+MTT+TI+K R KQ+ AVM EL Q ++RLN+
Sbjct: 350 GSMTTNTISKQRKKQEPAVMAELDQRLRRLNS 381


>tr|Q1H5B2|Q1H5B2_ARATH At3g07890 (Putative GTPase activator
           protein) OS=Arabidopsis thaliana GN=At3g07890 PE=2 SV=1
          Length = 400

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = -1

Query: 479 GTMTTHTIAKHRSKQQVAVMEELQQGVKRLNT 384
           G+MTT+TI+K R KQ+ AVM EL Q ++RLN+
Sbjct: 361 GSMTTNTISKQRKKQEPAVMAELDQRLRRLNS 392


>tr|A7PX17|A7PX17_VITVI Chromosome chr12 scaffold_36, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025863001
           PE=4 SV=1
          Length = 398

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = -1

Query: 479 GTMTTHTIAKHRSKQQVAVMEELQQGVKRLNT 384
           G+MTT+TI+K R KQ+ AVM EL Q ++RLN+
Sbjct: 361 GSMTTNTISKQRKKQEPAVMAELDQRLRRLNS 392


>tr|Q6Z973|Q6Z973_ORYSJ Os08g0337700 protein OS=Oryza sativa subsp.
           japonica GN=P0683E12.31 PE=4 SV=1
          Length = 419

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 17/32 (53%), Positives = 24/32 (75%)
 Frame = -1

Query: 479 GTMTTHTIAKHRSKQQVAVMEELQQGVKRLNT 384
           G+MTT+TI K R KQ+  VM EL Q ++RL++
Sbjct: 383 GSMTTNTITKERKKQETVVMAELDQRIRRLSS 414


>tr|A3BS32|A3BS32_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025854 PE=4 SV=1
          Length = 376

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 17/32 (53%), Positives = 24/32 (75%)
 Frame = -1

Query: 479 GTMTTHTIAKHRSKQQVAVMEELQQGVKRLNT 384
           G+MTT+TI K R KQ+  VM EL Q ++RL++
Sbjct: 340 GSMTTNTITKERKKQETVVMAELDQRIRRLSS 371


>tr|A9NZ90|A9NZ90_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 188

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = -1

Query: 479 GTMTTHTIAKHRSKQQVAVMEELQQGVKRLNT 384
           G+MTT+TI K R KQ+ AVM EL +  +RL +
Sbjct: 146 GSMTTNTITKQRKKQEPAVMAELDKRSRRLES 177


>tr|B1QYZ6|B1QYZ6_CLOBU L-fucose isomerase OS=Clostridium butyricum
           5521 GN=fucI PE=4 SV=1
          Length = 597

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 130 NQYSQGSSLKARHMYHNKAPPTMVTNHIVTSYGDSLQLLESHKARPPD 273
           N Y +G    +R +   + P TM+  ++V   G  LQL+E H  + PD
Sbjct: 445 NGYFRGGGYSSRFLTEAEMPVTMIRLNLVKGLGPVLQLVEGHTVKLPD 492


>tr|A9RPI3|A9RPI3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_176931 PE=4 SV=1
          Length = 378

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = -1

Query: 479 GTMTTHTIAKHRSKQQVAVMEELQQGVKRLNT 384
           G ++T TI+K R K+Q AVM EL + + RL++
Sbjct: 336 GAVSTQTISKQRKKEQPAVMAELSRQINRLSS 367


>tr|B4W2J5|B4W2J5_9CYAN Putative uncharacterized protein
           OS=Microcoleus chthonoplastes PCC 7420 GN=MC7420_5241
           PE=4 SV=1
          Length = 1249

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = +1

Query: 130 NQYSQGSSLKARHMYHNKAPPTMVTNHIVTSYGDSLQ--LLESHKARPPDCI*T-ESDPH 300
           N YSQ +S+    +  +K PP  VTN+ +    + L   L+ ++   P   I T E+DP 
Sbjct: 199 NHYSQLASILLLGLDSSKHPPGWVTNYTLVELINQLSPPLIFANAGNPILLIRTRETDPE 258

Query: 301 NIPPLTPIFP--FCCNNG 348
           ++P L P  P  FC   G
Sbjct: 259 SLPALPPSAPERFCPYKG 276