BP914948
Clone id YMU001_000064_G03
Library
Length 547
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000064_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TATTCGCTTTTGTACATTGGCTTGTCTTCTTCGTCGTATTTTTAATTGGTAATCGTTGCT
TAAAGGAAGATGGTGAAGTTTGCACTCCCATTTAAGGATTGATCACCTAATGCTACAAGT
ATGTATAAGTTTTCTTTCATGCTAATTTTGTCCCAACATAAAGTTATTACTTGCCAATCC
TACTTGACCAGCCTACATAATAGGCTGAAAACTTGAGGTTGCTAGATTGCTGTGCATGAC
CTTCTAGCTAAAGTGCTGGATGTTTTTAAGTCTTCTTTATTTTGTTTCAATACTCTCGAT
GGATGGATGGCGAATCCCCATACTCACATCATGATGATATCATGCCAGCATACCTTATGC
TTGTATATAACCAGTACCAATGTATGATATGGATATTTCTAAGTGTAGACTCTACATGTA
CTCTGTACTTAAGGTCATCAGCCCAAAGCAAATTTGGGTGTCTTAAGTGTACATCGCAGC
GCCTCTATCTCACATAGCTTGTGCACTGGCATGCAAACCAGCACTCTGATCTCTCCATCT
GTGTATA
■■Homology search results ■■ -
sp_hit_id P81128
Definition sp|P81128|GRLF1_RAT Glucocorticoid receptor DNA-binding factor 1 OS=Rattus norvegicus
Align length 58
Score (bit) 31.6
E-value 2.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914948|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_G03.
(547 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P81128|GRLF1_RAT Glucocorticoid receptor DNA-binding factor 1... 32 2.6
sp|Q91YM2|GRLF1_MOUSE Glucocorticoid receptor DNA-binding factor... 32 2.6
sp|Q9NRY4|GRLF1_HUMAN Glucocorticoid receptor DNA-binding factor... 32 2.6
sp|P83509|GRLF1_CANFA Glucocorticoid receptor DNA-binding factor... 32 2.6
sp|Q8K448|ABCA5_MOUSE ATP-binding cassette sub-family A member 5... 30 7.6
sp|Q6UY61|L_SABVB RNA-directed RNA polymerase OS=Sabia virus (is... 30 7.7

>sp|P81128|GRLF1_RAT Glucocorticoid receptor DNA-binding factor 1
OS=Rattus norvegicus GN=Grlf1 PE=1 SV=2
Length = 1513

Score = 31.6 bits (70), Expect = 2.6
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -1

Query: 544 TQMERSECWF--ACQCTSYVR*RRCDVHLRHPNLLWADDLKYRVHVESTLRNIHIIHW 377
T+ E+ +C +C C +VR + HL H ++L D RV + N H ++W
Sbjct: 24 TEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRV-----VNNDHFLYW 76


>sp|Q91YM2|GRLF1_MOUSE Glucocorticoid receptor DNA-binding factor 1
OS=Mus musculus GN=Grlf1 PE=1 SV=3
Length = 1499

Score = 31.6 bits (70), Expect = 2.6
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -1

Query: 544 TQMERSECWF--ACQCTSYVR*RRCDVHLRHPNLLWADDLKYRVHVESTLRNIHIIHW 377
T+ E+ +C +C C +VR + HL H ++L D RV + N H ++W
Sbjct: 24 TEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRV-----VNNDHFLYW 76


>sp|Q9NRY4|GRLF1_HUMAN Glucocorticoid receptor DNA-binding factor 1
OS=Homo sapiens GN=GRLF1 PE=1 SV=2
Length = 1513

Score = 31.6 bits (70), Expect = 2.6
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -1

Query: 544 TQMERSECWF--ACQCTSYVR*RRCDVHLRHPNLLWADDLKYRVHVESTLRNIHIIHW 377
T+ E+ +C +C C +VR + HL H ++L D RV + N H ++W
Sbjct: 24 TEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRV-----VNNDHFLYW 76


>sp|P83509|GRLF1_CANFA Glucocorticoid receptor DNA-binding factor 1
OS=Canis familiaris GN=GRLF1 PE=2 SV=1
Length = 1500

Score = 31.6 bits (70), Expect = 2.6
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -1

Query: 544 TQMERSECWF--ACQCTSYVR*RRCDVHLRHPNLLWADDLKYRVHVESTLRNIHIIHW 377
T+ E+ +C +C C +VR + HL H ++L D RV + N H ++W
Sbjct: 24 TEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRV-----VNNDHFLYW 76


>sp|Q8K448|ABCA5_MOUSE ATP-binding cassette sub-family A member 5
OS=Mus musculus GN=Abca5 PE=1 SV=2
Length = 1642

Score = 30.0 bits (66), Expect = 7.6
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3

Query: 228 CCA*PXXXXAGCF*VFFILFQYSRWMDGESPYSHHDDIMPAYLMLVYNQYQCMIWIFL 401
C A P GC + FI + E+ Y+ D ++ A +M QC++WIFL
Sbjct: 1171 CIAIPIYPLLGCL-ISFIKGSWKNMPKNENTYNPWDRLLVAVIM---PYLQCILWIFL 1224


>sp|Q6UY61|L_SABVB RNA-directed RNA polymerase OS=Sabia virus (isolate
Human/Brasil/SPH114202/1990) GN=L PE=3 SV=1
Length = 2212

Score = 30.0 bits (66), Expect = 7.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1

Query: 466 LRHPNLLWADDLKYRVHVESTLRNIHIIH 380
L +PNL WA K + H+E L HI+H
Sbjct: 1712 LSNPNLFWAVKPKIQKHIEDRLSLNHILH 1740


tr_hit_id B2S142
Definition tr|B2S142|B2S142_BORHD Putative uncharacterized protein OS=Borrelia hermsii (strain DAH)
Align length 60
Score (bit) 35.0
E-value 2.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914948|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_G03.
(547 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B2S142|B2S142_BORHD Putative uncharacterized protein OS=Borre... 35 2.6

>tr|B2S142|B2S142_BORHD Putative uncharacterized protein OS=Borrelia
hermsii (strain DAH) GN=BH0699A PE=4 SV=1
Length = 276

Score = 35.0 bits (79), Expect = 2.6
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1

Query: 121 MYKFSFMLILSQHKVITCQSYLTSLHNRLKT*GC*IAVHDLLAKVLDVFKSSLFCFNTLD 300
+YK+SF+ L++ + I C+ + + +L+ I L+K++ KSSLFC+N D
Sbjct: 195 VYKWSFVYFLNEQEKIICEINNSGSNFKLR-----IYADFSLSKIIRELKSSLFCYNVTD 249