NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914955
Clone id YMU001_000064_G11
Library
Length 385
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000064_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATGTGCATGTCTTTTGTAACTATTGAAACCATGTATTTTCTCAATAATGACATTGTCTT
GTACTATTACATTGCAAGCTTACATCAAGTGATTGCATATGATGTATATAATGTCAGATA
CTTTCGTCAATTACCTGCGTCCAATTACTTTTGTCAGTTTGTATCTTGATCTAAACAATA
CTCTAAATGATGGAGTACTGTATATGTCTTATGGTGACTACTTGGGTCTATCTTGCACTT
TATTTCAAAGGTGAATCTGTGTTATCTTGGATTCATTTAGGTTTACTCTATTATTGAAAC
ATTCAATATGGTTGATGGGTGGCAGGGCATTTAGCCTTGCCACCCAAAATTTTTTACTCT
CGTGGCGCTGCTATATAAGGCTCTA
■■Homology search results ■■ -
sp_hit_id Q8IM46
Definition sp|Q8IM46|YPF02_PLAF7 Uncharacterized protein PF14_0045 OS=Plasmodium falciparum (isolate 3D7)
Align length 98
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914955|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_G11.
         (385 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8IM46|YPF02_PLAF7 Uncharacterized protein PF14_0045 OS=Plasm...    30   2.8  
sp|A1DM82|MED18_NEOFI Mediator of RNA polymerase II transcriptio...    30   4.9  
sp|Q4WNC6|MED18_ASPFU Mediator of RNA polymerase II transcriptio...    30   4.9  
sp|P47360|PGSA_MYCGE CDP-diacylglycerol--glycerol-3-phosphate 3-...    29   8.4  
sp|P52189|IRK4_MOUSE Inward rectifier potassium channel 4 OS=Mus...    29   8.4  

>sp|Q8IM46|YPF02_PLAF7 Uncharacterized protein PF14_0045
           OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0045 PE=4
           SV=1
          Length = 964

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = +3

Query: 33  CIFSIMTLSCTITLQAYIK*LHMMYIMSDTFVNYLRPITFVSLYLDLNNTLNDGVLYMSY 212
           C+F  +T +  +     +  +H +    DT+V+ LR   F + ++DL +T +      +Y
Sbjct: 23  CLFVFVTWALFLNNNGILYPVHCLKSAGDTYVDTLRGSNFNNEFIDLLSTRDICNTIKNY 82

Query: 213 GDYLGLSCTLFQR*ICV--ILDSFRFTLLLKHSIWLMG 320
                + C +    + +  I++S   TLL  H+I + G
Sbjct: 83  ITREQIKCAISYDVLNISNIINSLEKTLLRDHNIIING 120


>sp|A1DM82|MED18_NEOFI Mediator of RNA polymerase II transcription
           subunit 18 OS=Neosartorya fischeri (strain ATCC 1020 /
           DSM 3700 / NRRL 181) GN=srb5 PE=3 SV=1
          Length = 268

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 11  SFVT---IETMYFLNNDIVLYYYIASLHQVIAYDVYNVRYFRQLPASN 145
           +FVT   +E   F++NDIV++     LH+V+ Y   +    RQLPA N
Sbjct: 165 NFVTEYAVEGDIFIHNDIVIF-----LHRVLHYPTESQEPRRQLPALN 207


>sp|Q4WNC6|MED18_ASPFU Mediator of RNA polymerase II transcription
           subunit 18 OS=Aspergillus fumigatus GN=srb5 PE=3 SV=1
          Length = 268

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 11  SFVT---IETMYFLNNDIVLYYYIASLHQVIAYDVYNVRYFRQLPASN 145
           +FVT   +E   F++NDIV++     LH+V+ Y   +    RQLPA N
Sbjct: 165 NFVTEYAVEGDIFIHNDIVIF-----LHRVLHYPTESQEPRRQLPALN 207


>sp|P47360|PGSA_MYCGE CDP-diacylglycerol--glycerol-3-phosphate
           3-phosphatidyltransferase OS=Mycoplasma genitalium
           GN=pgsA PE=3 SV=1
          Length = 236

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 59  LYYYIASLHQVIAYDVYNVRYFRQLPASN 145
           L YY+A++  + ++ VYN++ ++QL A N
Sbjct: 205 LPYYLAAVFSIWSFIVYNIQIYQQLKAYN 233


>sp|P52189|IRK4_MOUSE Inward rectifier potassium channel 4 OS=Mus
           musculus GN=Kcnj4 PE=2 SV=1
          Length = 445

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 217 TTWVYLALYFKGESVLSWIHLGLLYY*NIQYG*WVA---GHLALPPKI 351
           T W Y+ + F    ++SW+  GLL++       W+A   G L   P +
Sbjct: 53  TRWRYMLMIFSAAFLVSWLFFGLLFW-------WIAFFHGDLEASPSV 93
tr_hit_id Q3ERF1
Definition tr|Q3ERF1|Q3ERF1_BACTI Sensor protein OS=Bacillus thuringiensis serovar israelensis ATCC 35646
Align length 89
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914955|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_G11.
         (385 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3ERF1|Q3ERF1_BACTI Sensor protein OS=Bacillus thuringiensis ...    35   1.9  
tr|B7IRH3|B7IRH3_BACCE Sporulation kinase OS=Bacillus cereus G98...    35   1.9  
tr|Q81AN4|Q81AN4_BACCR Sensor protein OS=Bacillus cereus (strain...    35   2.5  
tr|B7HAP9|B7HAP9_BACCE Sporulation kinase OS=Bacillus cereus B42...    35   2.5  
tr|B5UL31|B5UL31_BACCE Sporulation kinase OS=Bacillus cereus AH1...    35   2.5  
tr|Q1LUW8|Q1LUW8_DANRE Novel protein OS=Danio rerio GN=si:ch211-...    34   3.2  
tr|Q4MHU8|Q4MHU8_BACCE Sensor protein OS=Bacillus cereus G9241 G...    34   3.2  
tr|Q58EA7|Q58EA7_DANRE Zgc:113361 OS=Danio rerio GN=zgc:113361 P...    33   5.5  
tr|Q1LUX1|Q1LUX1_DANRE Novel protein (Zgc:113361) OS=Danio rerio...    33   5.5  
tr|Q1LUW7|Q1LUW7_DANRE Novel protein OS=Danio rerio GN=si:ch211-...    33   5.5  
tr|Q1L8I9|Q1L8I9_DANRE Novel protein OS=Danio rerio GN=si:ch211-...    33   5.5  
tr|Q1L8I8|Q1L8I8_DANRE Si:ch211-244h7.6 protein OS=Danio rerio G...    33   5.5  
tr|Q1L8I5|Q1L8I5_DANRE Novel protein OS=Danio rerio GN=CH211-244...    33   5.5  
tr|A8BU57|A8BU57_GIALA Putative uncharacterized protein OS=Giard...    33   5.5  
tr|A4VE11|A4VE11_TETTH Putative uncharacterized protein OS=Tetra...    33   7.2  

>tr|Q3ERF1|Q3ERF1_BACTI Sensor protein OS=Bacillus thuringiensis
           serovar israelensis ATCC 35646 GN=RBTH_03037 PE=4 SV=1
          Length = 443

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 28/89 (31%), Positives = 44/89 (49%)
 Frame = +3

Query: 36  IFSIMTLSCTITLQAYIK*LHMMYIMSDTFVNYLRPITFVSLYLDLNNTLNDGVLYMSYG 215
           +FSI++    I    +   LH+ +I    F+    PI  V LY +  N +  G+LY+SY 
Sbjct: 54  LFSILSSIAIIFCMTFPFHLHVGFIYDLRFI----PIILVFLYGNTKNIIFIGILYLSYR 109

Query: 216 DYLGLSCTLFQR*ICVILDSFRFTLLLKH 302
            YLG +  L    I  I+  F  T+L ++
Sbjct: 110 FYLGGNGVLPSFIIFTII--FGITMLFRY 136


>tr|B7IRH3|B7IRH3_BACCE Sporulation kinase OS=Bacillus cereus G9842
           GN=BCG9842_B1681 PE=4 SV=1
          Length = 426

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 28/89 (31%), Positives = 44/89 (49%)
 Frame = +3

Query: 36  IFSIMTLSCTITLQAYIK*LHMMYIMSDTFVNYLRPITFVSLYLDLNNTLNDGVLYMSYG 215
           +FSI++    I    +   LH+ +I    F+    PI  V LY +  N +  G+LY+SY 
Sbjct: 37  LFSILSSIAIIFCMTFPFHLHVGFIYDLRFI----PIILVFLYGNTKNIIFIGILYLSYR 92

Query: 216 DYLGLSCTLFQR*ICVILDSFRFTLLLKH 302
            YLG +  L    I  I+  F  T+L ++
Sbjct: 93  FYLGGNGVLPSFIIFTII--FGITMLFRY 119


>tr|Q81AN4|Q81AN4_BACCR Sensor protein OS=Bacillus cereus (strain
           ATCC 14579 / DSM 31) GN=BC_3528 PE=4 SV=1
          Length = 417

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 28/89 (31%), Positives = 44/89 (49%)
 Frame = +3

Query: 36  IFSIMTLSCTITLQAYIK*LHMMYIMSDTFVNYLRPITFVSLYLDLNNTLNDGVLYMSYG 215
           +FSI++    I    +   LH+ +I    F+    PI  V LY +  N +  G+LY+SY 
Sbjct: 37  LFSILSSIAIIFCMTFPFHLHVGFIYDLRFI----PIILVFLYGNTKNIVFIGILYLSYR 92

Query: 216 DYLGLSCTLFQR*ICVILDSFRFTLLLKH 302
            YLG +  L    I  I+  F  T+L ++
Sbjct: 93  FYLGGNGVLPSFIIFTII--FGITMLFRY 119


>tr|B7HAP9|B7HAP9_BACCE Sporulation kinase OS=Bacillus cereus B4264
           GN=BCB4264_A3635 PE=4 SV=1
          Length = 417

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
 Frame = +3

Query: 36  IFSIMTLSCTITLQAYIK*LHMMYIMSDTFVNYLRPITFVSLYLDLNNTLNDGVLYMSYG 215
           +FSI++    I    +   LH+ +I    F+    PI  V LY +  N +  G+LY+SY 
Sbjct: 37  LFSILSSIAIIFCMTFPFHLHVGFIYDLRFI----PIILVFLYGNTKNIVFIGILYLSYR 92

Query: 216 DYLG----LSCTLFQR*ICVILDSFRFTL 290
            YLG    L   +    I VI   FR+ L
Sbjct: 93  FYLGGNGVLPSFIIFTIISVITMLFRYLL 121


>tr|B5UL31|B5UL31_BACCE Sporulation kinase OS=Bacillus cereus AH1134
           GN=BCAH1134_3595 PE=4 SV=1
          Length = 417

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
 Frame = +3

Query: 36  IFSIMTLSCTITLQAYIK*LHMMYIMSDTFVNYLRPITFVSLYLDLNNTLNDGVLYMSYG 215
           +FSI++    I    +   LH+ +I    F+    PI  V LY +  N +  G+LY+SY 
Sbjct: 37  LFSILSSIAIIFCMTFPFHLHVGFIYDLRFI----PIILVFLYGNTKNIVFIGILYLSYR 92

Query: 216 DYLG----LSCTLFQR*ICVILDSFRFTL 290
            YLG    L   +    I VI   FR+ L
Sbjct: 93  FYLGGNGVLPSFIIFTIISVITMLFRYLL 121


>tr|Q1LUW8|Q1LUW8_DANRE Novel protein OS=Danio rerio
           GN=si:ch211-244h7.6 PE=3 SV=1
          Length = 370

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 187 MMEYCICLMVTTWVYLALYFKGESVLSWIHLGLLYY 294
           ++++   L+ T W ++ LYF     LSW+  GLL+Y
Sbjct: 46  VLDFWTTLVETRWRFILLYFVASYTLSWLIFGLLWY 81


>tr|Q4MHU8|Q4MHU8_BACCE Sensor protein OS=Bacillus cereus G9241
           GN=BCE_G9241_3469 PE=4 SV=1
          Length = 417

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +3

Query: 36  IFSIMTLSCTITLQAYIK*LHMMYIMSDTFVNYLRPITFVSLYLDLNNTLNDGVLYMSYG 215
           +FSI++    I    +   LH  +I    F+    PI  V LY +  N +  G+LY+SY 
Sbjct: 37  LFSILSSVAIIFCMTFPFHLHAGFIYDLRFI----PIILVFLYGNTKNIVFIGILYLSYR 92

Query: 216 DYLG----LSCTLFQR*ICVILDSFRFTL 290
            YLG    L   +    I VI   FR+ L
Sbjct: 93  FYLGGNGVLPSFIIFTIISVITMFFRYVL 121


>tr|Q58EA7|Q58EA7_DANRE Zgc:113361 OS=Danio rerio GN=zgc:113361 PE=2
           SV=1
          Length = 370

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 187 MMEYCICLMVTTWVYLALYFKGESVLSWIHLGLLYY 294
           ++++   L+ T W ++ LYF     LSW   GLL+Y
Sbjct: 46  VLDFWTTLVETRWRFILLYFVASFTLSWFIFGLLWY 81


>tr|Q1LUX1|Q1LUX1_DANRE Novel protein (Zgc:113361) OS=Danio rerio
           GN=CH211-241L24.3 PE=3 SV=1
          Length = 370

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 187 MMEYCICLMVTTWVYLALYFKGESVLSWIHLGLLYY 294
           ++++   L+ T W ++ LYF     LSW   GLL+Y
Sbjct: 46  VLDFWTTLVETRWRFILLYFVASFTLSWFIFGLLWY 81


>tr|Q1LUW7|Q1LUW7_DANRE Novel protein OS=Danio rerio
           GN=si:ch211-244h7.8 PE=3 SV=1
          Length = 370

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 187 MMEYCICLMVTTWVYLALYFKGESVLSWIHLGLLYY 294
           ++++   L+ T W ++ LYF     LSW   GLL+Y
Sbjct: 46  VLDFWTTLVETRWRFIILYFVASYTLSWFIFGLLWY 81