BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914965|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_H11.
         (561 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q67344|NRAM_I82A7 Neuraminidase (Fragment) OS=Influenza A vir...    30   6.2  
sp|Q55GD6|SF3B4_DICDI Splicing factor 3B subunit 4 OS=Dictyostel...    30   8.1  

>sp|Q67344|NRAM_I82A7 Neuraminidase (Fragment) OS=Influenza A virus
           (strain A/Swine/Hong Kong/127/1982 H3N2) GN=NA PE=3 SV=1
          Length = 446

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = -2

Query: 473 IKENSVFHFDTNREIGSVGSPCSAGLLMWAVLIERELKRCRTEIISYVSSRGCINYCFVP 294
           I ++S   ++T + I    +P S   +   V+++R+ +   + I S V S+GCIN CF  
Sbjct: 343 ISKDSRSGYETFKVIDGWSTPNSKSQINRQVIVDRDNRSGYSGIFS-VESKGCINRCFYV 401

Query: 293 FLV 285
            L+
Sbjct: 402 ELI 404


>sp|Q55GD6|SF3B4_DICDI Splicing factor 3B subunit 4 OS=Dictyostelium
           discoideum GN=sf3b4 PE=3 SV=1
          Length = 359

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 152 RQHHTYNRETHGKIKPVRHAYPFPAQITKNIFPHHYP 262
           +QHH +++       P+ H +P P Q+  +  PHH P
Sbjct: 301 QQHHPHHQH------PIPHPHPLPHQLRPHPHPHHPP 331

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914965|Adiantum capillus-veneris mRNA, clone:
YMU001_000064_H11.
         (561 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q123R9|Q123R9_POLSJ Putative transcriptional regulator, Fis f...    34   4.7  
tr|Q21QR3|Q21QR3_RHOFD Integrase OS=Rhodoferax ferrireducens (st...    34   6.2  
tr|A2DQ12|A2DQ12_TRIVA Putative uncharacterized protein OS=Trich...    34   6.2  

>tr|Q123R9|Q123R9_POLSJ Putative transcriptional regulator, Fis
           family OS=Polaromonas sp. (strain JS666 / ATCC BAA-500)
           GN=Bpro_4334 PE=4 SV=1
          Length = 386

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +2

Query: 41  DLELKHWNIWKSLL--ARDMLEKSSLLSNDYTQGLRL*ARQHHTYNRETHGKIKPVRHAY 214
           D  + H  I++SL   AR  L+K  L     T+ +R    +HHT   + HGKI       
Sbjct: 165 DYHVSHETIYRSLFIQARGALKKELLQHLRRTRAMR--RSRHHTQKTDNHGKITNAVSIS 222

Query: 215 PFPAQITKNIFPHHY 259
             PA +     P H+
Sbjct: 223 ERPASVEDRAVPGHW 237


>tr|Q21QR3|Q21QR3_RHOFD Integrase OS=Rhodoferax ferrireducens
           (strain DSM 15236 / ATCC BAA-621 / T118) GN=Rfer_4203
           PE=4 SV=1
          Length = 386

 Score = 33.9 bits (76), Expect = 6.2
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +2

Query: 17  QQLYM*MTDLELKHWNIWKSLL--ARDMLEKSSLLSNDYTQGLRL*ARQHHTYNRETHGK 190
           +Q Y    + ++ H  I++SL   AR  L+K  L     T+ +R    +HHT   + HGK
Sbjct: 157 KQAYADDENYQVSHETIYRSLFIQARGALKKELLQHLRRTRTMR--RSRHHTQKTDNHGK 214

Query: 191 IKPVRHAYPFPAQITKNIFPHHY 259
           I         PA +     P H+
Sbjct: 215 ITNAVSISERPASVEDRAIPGHW 237


>tr|A2DQ12|A2DQ12_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_493810 PE=4 SV=1
          Length = 269

 Score = 33.9 bits (76), Expect = 6.2
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +3

Query: 186 GR*NPSDMHILFLHK*QKTSFLIITPYDRESNIHQKGYEAIVDTTTTAHIRDYLCSTPFK 365
           GR +P ++ + F +      +     YD+E N   K Y     T T   I D+  ST FK
Sbjct: 107 GRYSPYELAMAFAYTISGKDYTFTASYDKEINATLKYYRPHFSTDTKFSISDFKTSTFFK 166

Query: 366 FSL 374
           F++
Sbjct: 167 FNI 169