BP914976
Clone id YMU001_000065_A12
Library
Length 569
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000065_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AACGAGATATTACCTGCAGGTACTCGAGGGTTCGCAGCTCGGTGGTGAAGGTGTCTTGTG
ATTCTGCTGGTATGTATGTAGCAATCTCATTTGTAACTCGGCACAAATCTTCGTTAGAGA
TCCACAGTATGACATGTACATGGAGTGAGCCTCGATTTTGCACTTCGTAGCGCATCATGT
GATGGTCTACATGGCCAAGTATGCTGCTTCCATTGATGATGTGTTTATTCAGGAAAGCAT
GCAAGCGAAGGGAAACAGTGTTGCACACTCTACAGGGCAATCGTTCCACTTGAAGTCTTG
GTTGTAGCCTTGAGCAAGTTTTTCAATTGTGATGACTTCTTGCCATCTTGTTTGGGAAAC
CTCATCAGCAGTGAATGTCAAGAACAGATGTGGTAGTCCCCATGTGTCCACCATTGTTAT
GAGGTCTCTCAAGTTTCGTCGATGCCACGGTGGAGTACTTGGCATTGTGGCTGGGAGATT
GTATCGAATAATATGCTTCACTGCATCATGTGTAGATGCCGCGGTGTGTGCTCGTTTGTA
GTTATCAATATCCCTTTGTAAAAATGTAC
■■Homology search results ■■ -
sp_hit_id Q54U64
Definition sp|Q54U64|Y1610_DICDI Putative uncharacterized protein DDB_G0281251 OS=Dictyostelium discoideum
Align length 34
Score (bit) 30.0
E-value 8.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914976|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_A12.
(569 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q54U64|Y1610_DICDI Putative uncharacterized protein DDB_G0281... 30 8.4

>sp|Q54U64|Y1610_DICDI Putative uncharacterized protein DDB_G0281251
OS=Dictyostelium discoideum GN=DDB_G0281251 PE=4 SV=1
Length = 1529

Score = 30.0 bits (66), Expect = 8.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2

Query: 487 SIQSPSHNAKYSTVASTKLERPHNNGGHMGTTTS 386
SI SPSH++ S+ +T + +NN TTTS
Sbjct: 666 SISSPSHSSSSSSSTTTNINNSNNNTATATTTTS 699


tr_hit_id A8J372
Definition tr|A8J372|A8J372_CHLRE Predicted protein (Fragment) OS=Chlamydomonas reinhardtii
Align length 84
Score (bit) 107.0
E-value 5.0e-22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914976|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_A12.
(569 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8J372|A8J372_CHLRE Predicted protein (Fragment) OS=Chlamydom... 107 5e-22
tr|Q7M562|Q7M562_DANRE Replicase/helicase/endonuclease OS=Danio ... 48 9e-09
tr|Q7M561|Q7M561_DANRE Replicase/helicase/endonuclease OS=Danio ... 48 9e-09
tr|Q7M560|Q7M560_DANRE Replicase/helicase/endonuclease OS=Danio ... 45 2e-07
tr|Q9N5Q7|Q9N5Q7_CAEEL Putative uncharacterized protein OS=Caeno... 39 1e-06
tr|O17306|O17306_CAEEL Putative uncharacterized protein (Putativ... 39 1e-06
tr|Q9N4X4|Q9N4X4_CAEEL Putative uncharacterized protein Y46B2A.2... 39 1e-06
tr|O44843|O44843_CAEEL Putative uncharacterized protein OS=Caeno... 39 1e-06
tr|Q7M559|Q7M559_DANRE Replicase/helicase/endonuclease OS=Danio ... 42 3e-06
tr|Q6ATF7|Q6ATF7_ORYSJ Putative uncharacterized protein OSJNBb00... 40 1e-04
tr|Q9SI21|Q9SI21_ARATH Putative helicase OS=Arabidopsis thaliana... 36 5e-04
tr|Q7M558|Q7M558_DANRE Replicase/helicase/endonuclease OS=Danio ... 45 0.002
tr|Q53R78|Q53R78_ORYSJ Putative uncharacterized protein OS=Oryza... 33 0.002
tr|Q2QP79|Q2QP79_ORYSJ AT hook motif-containing protein, putativ... 33 0.006
tr|Q0JP44|Q0JP44_ORYSJ Os01g0244200 protein OS=Oryza sativa subs... 32 0.028
tr|Q5NAA4|Q5NAA4_ORYSJ Helicase-like protein OS=Oryza sativa sub... 32 0.029
tr|Q5VR06|Q5VR06_ORYSJ Helicase-like protein OS=Oryza sativa sub... 32 0.029
tr|Q2QRJ4|Q2QRJ4_ORYSJ AT hook motif-containing protein, putativ... 31 0.030
tr|Q9M3G4|Q9M3G4_ARATH Putative uncharacterized protein T14K23_3... 30 0.065
tr|Q38JW4|Q38JW4_XIPMA Hel OS=Xiphophorus maculatus GN=Hel PE=4 ... 40 0.090
tr|Q9ZQ61|Q9ZQ61_ARATH Putative helicase OS=Arabidopsis thaliana... 32 0.10
tr|Q9LW42|Q9LW42_ARATH Helicase-like protein OS=Arabidopsis thal... 30 0.13
tr|Q2R017|Q2R017_ORYSJ Helicase, putative OS=Oryza sativa subsp.... 31 0.22
tr|Q2GMC5|Q2GMC5_CHAGB Putative uncharacterized protein OS=Chaet... 39 0.26
tr|Q0JNT8|Q0JNT8_ORYSJ Os01g0266200 protein (Fragment) OS=Oryza ... 30 0.30
tr|Q6MW89|Q6MW89_ORYSJ B1248C03.15 protein OS=Oryza sativa subsp... 31 0.37
tr|Q53N88|Q53N88_ORYSJ AT hook motif-containing protein, putativ... 29 1.00
tr|Q2R0Z1|Q2R0Z1_ORYSJ AT hook motif-containing protein, putativ... 29 1.00
tr|Q01M87|Q01M87_ORYSA OSIGBa0135L04.2 protein OS=Oryza sativa G... 29 1.0
tr|Q2R4F6|Q2R4F6_ORYSJ AT hook motif-containing protein, putativ... 30 1.1

>tr|A8J372|A8J372_CHLRE Predicted protein (Fragment)
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_149921 PE=4
SV=1
Length = 599

Score = 107 bits (267), Expect = 5e-22
Identities = 47/84 (55%), Positives = 64/84 (76%)
Frame = -3

Query: 561 LQRDIDNYKRAHTAASTHDAVKHIIRYNLPATMPSTPPWHRRNLRDLITMVDTWGLPHLF 382
L+R I +Y++ H AS +KHII+Y+LP+TMP+TP WHRRNL+DL+ +VD WGLP F
Sbjct: 515 LERAIADYRKRHPDASDAKLIKHIIKYSLPSTMPNTPSWHRRNLQDLLALVDRWGLPTHF 574

Query: 381 LTFTADEVSQTRWQEVITIEKLAQ 310
LT TADE S +RW+EV T+E + +
Sbjct: 575 LTLTADEFSTSRWEEVETLEDMVR 598


>tr|Q7M562|Q7M562_DANRE Replicase/helicase/endonuclease OS=Danio rerio
GN=hel_dr1 PE=4 SV=1
Length = 2289

Score = 47.8 bits (112), Expect(2) = 9e-09
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = -3

Query: 507 DAVKHIIRYNLPAT-----MPSTPPWHRRNLRDLITMVDTWGLPHLFLTFTADEVSQTRW 343
D V+ ++ +N AT + +P + + LRDL M+ G P F TF+A E+ RW
Sbjct: 920 DEVERLV-HNRDATRFMQPLRGSPAYWEKTLRDLQAMIRQLGTPTFFCTFSAAEM---RW 975

Query: 342 QEVITIEKLAQGYNQDFKWNDCPVECATL 256
E++T+ K QG DF D +C L
Sbjct: 976 PEIVTVIKAQQGEEIDFSQLDWATKCEIL 1004



Score = 35.4 bits (80), Expect(2) = 9e-09
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -2

Query: 277 PCRVCNTVSLRLHAFLNKHIINGSSILGHVDHHMMRYEVQNRGSLHVHVILWISN 113
P V R+ A + +++ + +G V+ R E Q RGS H+H++ W+ +
Sbjct: 1008 PVTVMRMFEKRVDALMAHLLLSPAQPIGEVEDFFYRVEFQARGSPHIHLLAWVKD 1062


>tr|Q7M561|Q7M561_DANRE Replicase/helicase/endonuclease OS=Danio rerio
GN=hel_dr2 PE=4 SV=1
Length = 2181

Score = 47.8 bits (112), Expect(2) = 9e-09
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = -3

Query: 507 DAVKHIIRYNLPAT-----MPSTPPWHRRNLRDLITMVDTWGLPHLFLTFTADEVSQTRW 343
D V+ ++ +N AT + +P + + LRDL M+ G P F TF+A E+ RW
Sbjct: 812 DEVERLV-HNRDATRFMQPLRGSPAYWEKTLRDLQAMIRQLGTPTFFCTFSAAEM---RW 867

Query: 342 QEVITIEKLAQGYNQDFKWNDCPVECATL 256
E++T+ K QG DF D +C L
Sbjct: 868 PEIVTVIKAQQGEEIDFSQLDWATKCEIL 896



Score = 35.4 bits (80), Expect(2) = 9e-09
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -2

Query: 277 PCRVCNTVSLRLHAFLNKHIINGSSILGHVDHHMMRYEVQNRGSLHVHVILWISN 113
P V R+ A + +++ + +G V+ R E Q RGS H+H++ W+ +
Sbjct: 900 PVTVMRMFEKRVDALMAHLLLSPAQPIGEVEDFFYRVEFQARGSPHIHLLAWVKD 954


>tr|Q7M560|Q7M560_DANRE Replicase/helicase/endonuclease OS=Danio rerio
GN=hel_dr3 PE=4 SV=1
Length = 2353

Score = 44.7 bits (104), Expect(2) = 2e-07
Identities = 27/67 (40%), Positives = 34/67 (50%)
Frame = -3

Query: 456 TPPWHRRNLRDLITMVDTWGLPHLFLTFTADEVSQTRWQEVITIEKLAQGYNQDFKWNDC 277
TP + + LRDL M+ G P F TF+A E+ RW EVIT K Q +F D
Sbjct: 1011 TPAYWEKTLRDLFAMLRQLGTPTFFCTFSAAEM---RWPEVITAIKAQQCETVNFSELDW 1067

Query: 276 PVECATL 256
V+C L
Sbjct: 1068 SVKCEIL 1074



Score = 33.9 bits (76), Expect(2) = 2e-07
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2

Query: 247 RLHAFLNKHIINGSSILGHVDHHMMRYEVQNRGSLHVHVILWISN 113
R+ A + I++ + +G V R E Q RGS H+H + W+ +
Sbjct: 1088 RVEALMRDLIMSPAQPIGEVIDFFYRVEFQQRGSPHIHCLFWVKD 1132


>tr|Q9N5Q7|Q9N5Q7_CAEEL Putative uncharacterized protein
OS=Caenorhabditis elegans GN=F59H6.5 PE=2 SV=1
Length = 1486

Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Frame = -3

Query: 543 NYKRAHTA---ASTHDAVKHII---------RYNLPATMPSTPPWHRRNLRDLITMVDTW 400
NY R H A+ ++AV+ I R LP++ P +P +N +D + +V +
Sbjct: 451 NYHRTHQVDLKAANYNAVQDYIAGDTDVPGRRIVLPSSFPGSPRAMVQNFQDAMAIVSKF 510

Query: 399 GLPHLFLTFTADEVSQTRWQEV 334
G P +FLTFT + W E+
Sbjct: 511 GKPDIFLTFTCNPA----WTEI 528



Score = 37.4 bits (85), Expect(2) = 1e-06
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = -2

Query: 307 LQPRLQVERLPCRVCNTVSLRLHAFLNKHIINGSSILGHVDHHMMRYEVQNRGSLHVHVI 128
L PR P + L++ A + + ILGHV ++ +E Q RG HVH++
Sbjct: 532 LGPRQSASDRPDLIARVFKLKVDALFDDLL--NRDILGHVAAYISVFEWQKRGLPHVHML 589

Query: 127 LWISNEDLCRVTNEIATYIPAE 62
L ++ R + +I + AE
Sbjct: 590 LTMAENSKPRTSEDIDKIVQAE 611


>tr|O17306|O17306_CAEEL Putative uncharacterized protein (Putative
uncharacterized protein Y16E11A.2) OS=Caenorhabditis
elegans GN=Y16E11A.2 PE=4 SV=1
Length = 1466

Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Frame = -3

Query: 543 NYKRAHTA---ASTHDAVKHII---------RYNLPATMPSTPPWHRRNLRDLITMVDTW 400
NY R H A+ ++AV+ I R LP++ P +P +N +D + +V +
Sbjct: 451 NYHRTHQVDLKAANYNAVQDYIAGDTDVPGRRIVLPSSFPGSPRAMVQNFQDAMAIVSKF 510

Query: 399 GLPHLFLTFTADEVSQTRWQEV 334
G P +FLTFT + W E+
Sbjct: 511 GKPDIFLTFTCNPA----WTEI 528



Score = 37.4 bits (85), Expect(2) = 1e-06
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = -2

Query: 307 LQPRLQVERLPCRVCNTVSLRLHAFLNKHIINGSSILGHVDHHMMRYEVQNRGSLHVHVI 128
L PR P + L++ A + + ILGHV ++ +E Q RG HVH++
Sbjct: 532 LGPRQSASDRPDLIARVFKLKVDALFDDLL--NRDILGHVAAYISVFERQKRGLPHVHML 589

Query: 127 LWISNEDLCRVTNEIATYIPAE 62
L ++ R + +I + AE
Sbjct: 590 LTMAENSKPRTSEDIDKIVQAE 611


>tr|Q9N4X4|Q9N4X4_CAEEL Putative uncharacterized protein Y46B2A.2
OS=Caenorhabditis elegans GN=Y46B2A.2 PE=2 SV=1
Length = 1365

Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Frame = -3

Query: 543 NYKRAHTA---ASTHDAVKHII---------RYNLPATMPSTPPWHRRNLRDLITMVDTW 400
NY R H A+ ++AV+ I R LP++ P +P +N +D + +V +
Sbjct: 361 NYHRTHQVDLKAANYNAVQDYIAGDTDVPGRRIVLPSSFPGSPRAMVQNFQDAMAIVSKF 420

Query: 399 GLPHLFLTFTADEVSQTRWQEV 334
G P +FLTFT + W E+
Sbjct: 421 GKPDIFLTFTCNPA----WTEI 438



Score = 37.4 bits (85), Expect(2) = 1e-06
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = -2

Query: 307 LQPRLQVERLPCRVCNTVSLRLHAFLNKHIINGSSILGHVDHHMMRYEVQNRGSLHVHVI 128
L PR P + L++ A + + ILGHV ++ +E Q RG HVH++
Sbjct: 442 LGPRQSASDRPDLIARVFKLKVDALFDDLL--NRDILGHVAAYISVFEWQKRGLPHVHML 499

Query: 127 LWISNEDLCRVTNEIATYIPAE 62
L ++ R + +I + AE
Sbjct: 500 LTMAENSKPRTSEDIDKIVQAE 521


>tr|O44843|O44843_CAEEL Putative uncharacterized protein
OS=Caenorhabditis elegans GN=F33H12.6 PE=4 SV=1
Length = 1360

Score = 38.5 bits (88), Expect(2) = 1e-06
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Frame = -3

Query: 543 NYKRAHTA---ASTHDAVKHII---------RYNLPATMPSTPPWHRRNLRDLITMVDTW 400
NY R H A+ ++AV+ I R LP++ P +P +N +D + +V +
Sbjct: 345 NYHRTHQVDLKAANYNAVQDYIAGDTDVPGRRIVLPSSFPGSPRAMVQNFQDAMAIVSKF 404

Query: 399 GLPHLFLTFTADEVSQTRWQEV 334
G P +FLTFT + W E+
Sbjct: 405 GKPDIFLTFTCNPA----WTEI 422



Score = 37.4 bits (85), Expect(2) = 1e-06
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = -2

Query: 307 LQPRLQVERLPCRVCNTVSLRLHAFLNKHIINGSSILGHVDHHMMRYEVQNRGSLHVHVI 128
L PR P + L++ A + + ILGHV ++ +E Q RG HVH++
Sbjct: 426 LGPRQSASDRPDLIARVFKLKVDALFDDLL--NRDILGHVAAYISVFEWQKRGLPHVHML 483

Query: 127 LWISNEDLCRVTNEIATYIPAE 62
L ++ R + +I + AE
Sbjct: 484 LTMAENSKPRTSEDIDKIVQAE 505


>tr|Q7M559|Q7M559_DANRE Replicase/helicase/endonuclease OS=Danio rerio
GN=hel_dr4 PE=4 SV=1
Length = 2783

Score = 41.6 bits (96), Expect(2) = 3e-06
Identities = 29/81 (35%), Positives = 38/81 (46%)
Frame = -3

Query: 498 KHIIRYNLPATMPSTPPWHRRNLRDLITMVDTWGLPHLFLTFTADEVSQTRWQEVITIEK 319
K R+ P + TP + + LRDL M+ G P F TF+A E+ RW EVIT K
Sbjct: 1432 KEATRFMQP--LRGTPAYWEKTLRDLFAMLRQLGTPTFFCTFSAAEM---RWPEVITAIK 1486

Query: 318 LAQGYNQDFKWNDCPVECATL 256
Q +F D +C L
Sbjct: 1487 TQQRETVNFCDLDWSEKCEIL 1507



Score = 32.7 bits (73), Expect(2) = 3e-06
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2

Query: 247 RLHAFLNKHIINGSSILGHVDHHMMRYEVQNRGSLHVHVILWISN 113
R+ A + I++ + +G V R E Q RGS H+H + W+ +
Sbjct: 1521 RVEALMRDLIMSPAQPIGEVIDFFYRVEFQLRGSPHIHCLFWVKD 1565


>tr|Q6ATF7|Q6ATF7_ORYSJ Putative uncharacterized protein
OSJNBb0061M13.15 OS=Oryza sativa subsp. japonica
GN=OSJNBb0061M13.15 PE=4 SV=1
Length = 1396

Score = 40.0 bits (92), Expect(2) = 1e-04
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = -3

Query: 477 LPATMPSTPPWHRRNLRDLITMVDTWGLPHLFLTFTADEVSQTRWQEVI-TIEKLAQGYN 301
LPA+ +P ++ +N +D + + +G PHLF+TFT + + W E++ + ++ Y+
Sbjct: 573 LPASFTGSPRYYYQNYQDCVALCRRFGCPHLFITFTCNAL----WLEIVEALAPISGQYS 628

Query: 300 QD 295
D
Sbjct: 629 SD 630



Score = 28.9 bits (63), Expect(2) = 1e-04
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -2

Query: 250 LRLHAFLNKHIINGSSILGHVDHHMMRYEVQNRGSLHVHVILWISNE 110
++L F++ + N G + + E Q RG HVH+I+W+ +
Sbjct: 641 MKLRIFMDDIVKN--QFFGPISGVVYTIEFQKRGLPHVHIIVWLKRD 685