BP914993 |
Clone id |
YMU001_000065_C05 |
Library |
YMU01 |
Length |
562 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000065_C05. |
Accession |
BP914993 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1237Contig1 |
Sequence |
GGGCATGCAGTTGCTGGAGGCTGTATGATGGCACTTGCTCATGATTTCCGGTACATGCGA AGCGACAGAGGGCTTATAATGTTGAATGAGGTAGAAATCAAGCTTCCTTTAACTCCTGGT ATGAATGCAATCATCAAGAGCAAGCTCCCAGTGCCAACCTACCATGAAGCAGTGCTAACG GCTCATCGGTATGTAGGGAAGACTGCAGCCGTTGCAGGAATAATACATGGGGCGTGCTCT GATGTAGACTCCACCCGGGAAATAGCTATCAAGAAAGCATCTGAATTAGCTTCCAGAAAT TATGATCGCGGTGTCTACAGAGCATTAAAGGAAGAAGTGTTCAAGTGGGAAGCTCGGGAA CTCTTGCATGGAAGTCTAGAAGGAGTGCCAGAAAGCCTTGCACGTGCATCCAGACTTTGA TGAATTCATTCGATTGTCTACTAAACCGTTCATGTGACATAATGGAGCTTGCAAGAAGAG GCTTTGAATGAACGGCGTTACGAATTGGATGAAAACTATCTAGTAGAGCTTTACCCATTC ATAATGAGAACTGCAGTGTGTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5PIL1 |
Definition |
sp|Q5PIL1|CAID_SALPA Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A |
Align length |
140 |
Score (bit) |
38.5 |
E-value |
0.023 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914993|Adiantum capillus-veneris mRNA, clone: YMU001_000065_C05. (562 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5PIL1|CAID_SALPA Carnitinyl-CoA dehydratase OS=Salmonella pa... 39 0.023 sp|Q57TJ1|CAID_SALCH Carnitinyl-CoA dehydratase OS=Salmonella ch... 39 0.023 sp|A9MYJ5|CAID_SALPB Carnitinyl-CoA dehydratase OS=Salmonella pa... 38 0.030 sp|A8ALR7|CAID_CITK8 Carnitinyl-CoA dehydratase OS=Citrobacter k... 38 0.030 sp|Q8Z9L5|CAID_SALTI Carnitinyl-CoA dehydratase OS=Salmonella ty... 37 0.067 sp|Q8ZRX5|CAID_SALTY Carnitinyl-CoA dehydratase OS=Salmonella ty... 37 0.088 sp|P59395|CAID_SHIFL Carnitinyl-CoA dehydratase OS=Shigella flex... 35 0.20 sp|P31551|CAID_ECOLI Carnitinyl-CoA dehydratase OS=Escherichia c... 35 0.20 sp|B1IRE0|CAID_ECOLC Carnitinyl-CoA dehydratase OS=Escherichia c... 35 0.20 sp|Q8FLA6|CAID_ECOL6 Carnitinyl-CoA dehydratase OS=Escherichia c... 35 0.25 sp|Q0TLV3|CAID_ECOL5 Carnitinyl-CoA dehydratase OS=Escherichia c... 35 0.25 sp|A9MR28|CAID_SALAR Carnitinyl-CoA dehydratase OS=Salmonella ar... 34 0.43 sp|Q8XA35|CAID_ECO57 Carnitinyl-CoA dehydratase OS=Escherichia c... 34 0.57 sp|Q7MZ92|FADB_PHOLL Fatty acid oxidation complex subunit alpha ... 33 0.74 sp|Q4FQC6|FADB_PSYA2 Fatty acid oxidation complex subunit alpha ... 33 1.3 sp|Q1Q8J9|FADB_PSYCK Fatty acid oxidation complex subunit alpha ... 32 1.7 sp|A8G8D1|FADB_SERP5 Fatty acid oxidation complex subunit alpha ... 32 2.2 sp|Q86YB7|ECHD2_HUMAN Enoyl-CoA hydratase domain-containing prot... 32 2.2 sp|Q5R646|ECHM_PONAB Enoyl-CoA hydratase, mitochondrial OS=Pongo... 32 2.8 sp|P30084|ECHM_HUMAN Enoyl-CoA hydratase, mitochondrial OS=Homo ... 32 2.8 sp|P54468|YQFC_BACSU Uncharacterized protein yqfC OS=Bacillus su... 31 3.7 sp|Q6NRC9|LRCC1_XENLA Leucine-rich repeat and coiled-coil domain... 31 3.7 sp|A7MQP0|FADB_ENTS8 Fatty acid oxidation complex subunit alpha ... 31 3.7 sp|A1BJ58|GATB_CHLPD Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 30 6.3 sp|Q87TN9|FADB_VIBPA Fatty acid oxidation complex subunit alpha ... 30 6.3 sp|Q9KNI1|FADB_VIBCH Fatty acid oxidation complex subunit alpha ... 30 6.3 sp|A5F465|FADB_VIBC3 Fatty acid oxidation complex subunit alpha ... 30 6.3 sp|A8ACZ4|FADB_CITK8 Fatty acid oxidation complex subunit alpha ... 30 6.3 sp|A7N1D2|FADB_VIBHB Fatty acid oxidation complex subunit alpha ... 30 8.2 sp|Q489W3|FADB_COLP3 Fatty acid oxidation complex subunit alpha ... 30 8.2
>sp|Q5PIL1|CAID_SALPA Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A GN=caiD PE=3 SV=1 Length = 261
Score = 38.5 bits (88), Expect = 0.023 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%) Frame = +1
Query: 1 GHAVAGGCMMALAHDFRYMRSDRGLIMLNEVEIKLPLTPGMNAIIK--SKLPVPTYHEAV 174 G+A GG +ALA DF + + E KL + P +++ LP +E V Sbjct: 103 GYAFGGGFELALAADFIVCAENASFAL---PEAKLGIVPDSGGVLRLPKLLPPAIVNEMV 159
Query: 175 LTAHRYVGKTAAVAGIIHGACSD---VDSTREIA--IKKASELASRNYDRGVYRALKEEV 339 +T R + A GI++ S +DS RE+A + ++ LA + +YRA E Sbjct: 160 MTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNSAPLAIAAL-KEIYRATSEMP 218
Query: 340 FKWEARELLHGSLEGVPESL 399 + R + G L+ P L Sbjct: 219 VEEGYRYIRSGVLKHYPSVL 238
>sp|Q57TJ1|CAID_SALCH Carnitinyl-CoA dehydratase OS=Salmonella choleraesuis GN=caiD PE=3 SV=1 Length = 261
Score = 38.5 bits (88), Expect = 0.023 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%) Frame = +1
Query: 1 GHAVAGGCMMALAHDFRYMRSDRGLIMLNEVEIKLPLTPGMNAIIK--SKLPVPTYHEAV 174 G+A GG +ALA DF + + E KL + P +++ LP +E V Sbjct: 103 GYAFGGGFELALAADFIVCAENASFAL---PEAKLGIVPDSGGVLRLPKLLPPAIVNEMV 159
Query: 175 LTAHRYVGKTAAVAGIIHGACSD---VDSTREIA--IKKASELASRNYDRGVYRALKEEV 339 +T R + A GI++ S +DS RE+A + ++ LA + +YRA E Sbjct: 160 MTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNSAPLAIAAL-KEIYRATSEMP 218
Query: 340 FKWEARELLHGSLEGVPESL 399 + R + G L+ P L Sbjct: 219 VEEGYRYIRSGVLKHYPSVL 238
>sp|A9MYJ5|CAID_SALPB Carnitinyl-CoA dehydratase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiD PE=3 SV=1 Length = 261
Score = 38.1 bits (87), Expect = 0.030 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%) Frame = +1
Query: 1 GHAVAGGCMMALAHDFRYMRSDRGLIMLNEVEIKLPLTPGMNAIIK--SKLPVPTYHEAV 174 G+A GG +ALA DF + + E KL + P +++ LP +E V Sbjct: 103 GYAFGGGFELALAADFIVCAENASFAL---PEAKLGIVPDSGGVLRLPKLLPPAIVNEMV 159
Query: 175 LTAHRYVGKTAAVAGIIHGACSD---VDSTREIA--IKKASELASRNYDRGVYRALKEEV 339 +T R + A G+++ S +DS RE+A + ++ LA + +YRA E Sbjct: 160 MTGRRMSAEEALRWGVVNRVVSQSELMDSARELAQQLVNSAPLAIAAL-KEIYRATSEMP 218
Query: 340 FKWEARELLHGSLEGVPESL 399 + R + G L+ P L Sbjct: 219 VEEGYRYIRSGVLKHYPSVL 238
>sp|A8ALR7|CAID_CITK8 Carnitinyl-CoA dehydratase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiD PE=3 SV=1 Length = 261
Score = 38.1 bits (87), Expect = 0.030 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 7/140 (5%) Frame = +1
Query: 1 GHAVAGGCMMALAHDFRYMRSDRGLIMLNEVEIKLPLTPGMNAIIK--SKLPVPTYHEAV 174 G+A GG +ALA DF + + E KL + P +++ LP +E + Sbjct: 103 GYAFGGGFELALAADFIVCADNASFAL---PEAKLGIVPDSGGVLRLPKLLPPAIVNEML 159
Query: 175 LTAHRYVGKTAAVAGIIHGACSD---VDSTREIA--IKKASELASRNYDRGVYRALKEEV 339 +T R + A GI++ S +DS RE+A + ++ LA + +YRA E Sbjct: 160 MTGRRMDAEEALRWGIVNRVVSQQALMDSARELAQQLVNSAPLAIAAL-KEIYRATSEMP 218
Query: 340 FKWEARELLHGSLEGVPESL 399 + R + G+L+ P L Sbjct: 219 VEEGYRYIRSGALKHYPSVL 238
>sp|Q8Z9L5|CAID_SALTI Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=caiD PE=3 SV=3 Length = 261
Score = 37.0 bits (84), Expect = 0.067 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%) Frame = +1
Query: 1 GHAVAGGCMMALAHDFRYMRSDRGLIMLNEVEIKLPLTPGMNAIIK--SKLPVPTYHEAV 174 G+A GG +ALA DF + + E KL + P +++ LP +E V Sbjct: 103 GYAFGGGFELALAADFIVCAENASFAL---PEAKLGIVPDSGGVLRLPKLLPPAIVNEMV 159
Query: 175 LTAHRYVGKTAAVAGIIHGACSD---VDSTREIA--IKKASELASRNYDRGVYRALKEEV 339 +T R + A GI++ S ++S RE+A + ++ LA + +YRA E Sbjct: 160 MTGRRMSAEEALRWGIVNRVVSQSELMESARELAQQLVNSAPLAIAAL-KEIYRATSEMP 218
Query: 340 FKWEARELLHGSLEGVPESL 399 + R + G L+ P L Sbjct: 219 VEEGYRYIRSGVLKHYPSVL 238
>sp|Q8ZRX5|CAID_SALTY Carnitinyl-CoA dehydratase OS=Salmonella typhimurium GN=caiD PE=3 SV=3 Length = 261
Score = 36.6 bits (83), Expect = 0.088 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 7/140 (5%) Frame = +1
Query: 1 GHAVAGGCMMALAHDFRYMRSDRGLIMLNEVEIKLPLTPGMNAIIK--SKLPVPTYHEAV 174 G+A GG +ALA DF + + E KL + P +++ LP +E V Sbjct: 103 GYAFGGGFELALAADFIVCAENASFAL---PEAKLGIVPDSGGVLRLPKLLPPAIVNEMV 159
Query: 175 LTAHRYVGKTAAVAGIIHGACSD---VDSTREIA--IKKASELASRNYDRGVYRALKEEV 339 +T R + A G+++ S ++S RE+A + ++ LA + +YRA E Sbjct: 160 MTGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNSAPLAIAAL-KEIYRATSEMP 218
Query: 340 FKWEARELLHGSLEGVPESL 399 + R + G L+ P L Sbjct: 219 VEEGYRYIRSGVLKHYPSVL 238
>sp|P59395|CAID_SHIFL Carnitinyl-CoA dehydratase OS=Shigella flexneri GN=caiD PE=3 SV=2 Length = 261
Score = 35.4 bits (80), Expect = 0.20 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 7/140 (5%) Frame = +1
Query: 1 GHAVAGGCMMALAHDFRYMRSDRGLIMLNEVEIKLPLTPGMNAIIK--SKLPVPTYHEAV 174 G+A GG +ALA DF + + E KL + P +++ LP +E V Sbjct: 103 GYAFGGGFELALAADFIVCADNASFAL---PEAKLGIVPDSGGVLRLPKILPPTIVNEMV 159
Query: 175 LTAHRYVGKTAAVAGIIHGACSD---VDSTREIA--IKKASELASRNYDRGVYRALKEEV 339 +T R + A GI++ S +D+ RE+A + ++ LA + +YR E Sbjct: 160 MTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAAL-KEIYRTTSEMP 218
Query: 340 FKWEARELLHGSLEGVPESL 399 + R + G L+ P L Sbjct: 219 VEEAYRYIRSGVLKHYPSVL 238
>sp|P31551|CAID_ECOLI Carnitinyl-CoA dehydratase OS=Escherichia coli (strain K12) GN=caiD PE=1 SV=4 Length = 261
Score = 35.4 bits (80), Expect = 0.20 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 7/140 (5%) Frame = +1
Query: 1 GHAVAGGCMMALAHDFRYMRSDRGLIMLNEVEIKLPLTPGMNAIIK--SKLPVPTYHEAV 174 G+A GG +ALA DF + + E KL + P +++ LP +E V Sbjct: 103 GYAFGGGFELALAADFIVCADNASFAL---PEAKLGIVPDSGGVLRLPKILPPAIVNEMV 159
Query: 175 LTAHRYVGKTAAVAGIIHGACSD---VDSTREIA--IKKASELASRNYDRGVYRALKEEV 339 +T R + A GI++ S +D+ RE+A + ++ LA + +YR E Sbjct: 160 MTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAAL-KEIYRTTSEMP 218
Query: 340 FKWEARELLHGSLEGVPESL 399 + R + G L+ P L Sbjct: 219 VEEAYRYIRSGVLKHYPSVL 238
>sp|B1IRE0|CAID_ECOLC Carnitinyl-CoA dehydratase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiD PE=3 SV=1 Length = 261
Score = 35.4 bits (80), Expect = 0.20 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 7/140 (5%) Frame = +1
Query: 1 GHAVAGGCMMALAHDFRYMRSDRGLIMLNEVEIKLPLTPGMNAIIK--SKLPVPTYHEAV 174 G+A GG +ALA DF + + E KL + P +++ LP +E V Sbjct: 103 GYAFGGGFELALAADFIVCADNASFAL---PEAKLGIVPDSGGVLRLPKILPPAIVNEMV 159
Query: 175 LTAHRYVGKTAAVAGIIHGACSD---VDSTREIA--IKKASELASRNYDRGVYRALKEEV 339 +T R + A GI++ S +D+ RE+A + ++ LA + +YR E Sbjct: 160 MTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAAL-KEIYRTTSEMP 218
Query: 340 FKWEARELLHGSLEGVPESL 399 + R + G L+ P L Sbjct: 219 VEEAYRYIRSGVLKHYPSVL 238
>sp|Q8FLA6|CAID_ECOL6 Carnitinyl-CoA dehydratase OS=Escherichia coli O6 GN=caiD PE=3 SV=3 Length = 261
Score = 35.0 bits (79), Expect = 0.25 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 7/140 (5%) Frame = +1
Query: 1 GHAVAGGCMMALAHDFRYMRSDRGLIMLNEVEIKLPLTPGMNAIIK--SKLPVPTYHEAV 174 G+A GG +ALA DF + + E KL + P +++ LP +E V Sbjct: 103 GYAFGGGFELALAADFIVCADNASFAL---PEAKLGIVPDSGGVLRLPKILPPAIVNEMV 159
Query: 175 LTAHRYVGKTAAVAGIIHGACSD---VDSTREIA--IKKASELASRNYDRGVYRALKEEV 339 +T R + A G+++ S +D+ RE+A + ++ LA + +YR E Sbjct: 160 MTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNSAPLAIAAL-KEIYRTTSEMP 218
Query: 340 FKWEARELLHGSLEGVPESL 399 + R + G L+ P L Sbjct: 219 VEEAYRYIRSGVLKHYPSVL 238
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RRB0 |
Definition |
tr|A9RRB0|A9RRB0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
114 |
Score (bit) |
151.0 |
E-value |
3.0e-35 |
Report |
|