NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914998
Clone id YMU001_000065_C11
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000065_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGACACCTGTCCGAGAGTTGTAGTAGCACGAGCATCCCATATCAGGTGCAACATCCACTT
TGGTAAACTGATTGTATGTGGGCAGTGGTATGATATGCCCTTGCCCCGTATGCTTCTCTG
CCCAATTCTTAGTTCTCCAAAATTGTAGCTGCTTCTGCAACTGTTTCATTCTCTCCAATA
AATCCTTCACATCGACAGCTTGATAATCACGTGCTTGGAGAGCCTCAACATCACAATCCT
CCAGTGATAGAATTGCAACATCATCAGTCTGCACGATTTCATCTTTGCTCACTTCAGCGG
CCAGCCTCCGAGACTTTCTTTTTGCTTTAGGCAGAGCTTGTACAGATGCCGAATCAGACG
GTTTCACGTCTAACACATTTATAGAGACCTTAGGTATGATTAGTTTGTTCTCGACACTGA
CAAAATCACTTTCACTTTTAGAGGATCTTGAAGGCTCTGAGAAAATGGGCCTTCTCTCCA
CTGATTGTCCTTTTGTATCAGAGCTCGTCGCCTTTGCACCCTCTTGCATCTGTACACCCT
CAATCGCCGTCGATGCATTTGAAACA
■■Homology search results ■■ -
sp_hit_id Q28317
Definition sp|Q28317|KIT_CAPHI Mast/stem cell growth factor receptor OS=Capra hircus
Align length 106
Score (bit) 33.5
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914998|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_C11.
         (566 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q28317|KIT_CAPHI Mast/stem cell growth factor receptor OS=Cap...    33   0.75 
sp|Q9QVP9|FAK2_MOUSE Protein tyrosine kinase 2 beta OS=Mus muscu...    33   0.98 
sp|Q08156|KIT_CHICK Mast/stem cell growth factor receptor OS=Gal...    33   1.3  
sp|P70600|FAK2_RAT Protein tyrosine kinase 2 beta OS=Rattus norv...    33   1.3  
sp|Q14289|FAK2_HUMAN Protein tyrosine kinase 2 beta OS=Homo sapi...    31   4.9  
sp|O74760|EIF3A_SCHPO Probable eukaryotic translation initiation...    31   4.9  
sp|Q7T019|DZIP1_DANRE Zinc finger protein Dzip1 OS=Danio rerio G...    31   4.9  
sp|Q8RI94|DNLJ_FUSNN DNA ligase OS=Fusobacterium nucleatum subsp...    31   4.9  
sp|Q5ZMN3|PHB2_CHICK Prohibitin-2 OS=Gallus gallus GN=PHB2 PE=2 ...    30   6.4  
sp|P16749|IE63_HCMVA Transcriptional regulator IE63 homolog OS=H...    30   6.4  
sp|Q9LET0|BH107_ARATH Putative transcription factor bHLH107 OS=A...    30   6.4  
sp|Q76II0|KIT_CALJA Mast/stem cell growth factor receptor OS=Cal...    30   8.3  

>sp|Q28317|KIT_CAPHI Mast/stem cell growth factor receptor OS=Capra
           hircus GN=KIT PE=2 SV=1
          Length = 978

 Score = 33.5 bits (75), Expect = 0.75
 Identities = 27/106 (25%), Positives = 46/106 (43%)
 Frame = -2

Query: 373 LDVKPSDSASVQALPKAKRKSRRLAAEVSKDEIVQTDDVAILSLEDCDVEALQARDYQAV 194
           +D+KP  S  V      KR+S R+ + + +D                   A+   D  A+
Sbjct: 723 MDMKPGVSYVVPTKAADKRRSARIGSYIERDV----------------TPAIMEDDELAL 766

Query: 193 DVKDLLERMKQLQKQLQFWRTKNWAEKHTGQGHIIPLPTYNQFTKV 56
           D++DLL    Q+ K + F  +KN   +     +I  L T+ + TK+
Sbjct: 767 DLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI--LLTHGRITKI 810


>sp|Q9QVP9|FAK2_MOUSE Protein tyrosine kinase 2 beta OS=Mus musculus
            GN=Ptk2b PE=1 SV=1
          Length = 1009

 Score = 33.1 bits (74), Expect = 0.98
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
 Frame = -2

Query: 403  LIIPKVSINVLDVKPSDSASVQALPKAKRK--SRRLAAEVSKDEIVQTDDVAILSLEDCD 230
            L + K+  +V D+ PS  AS +   +  +K  ++ LA  ++K ++ Q + V  LS EDC 
Sbjct: 915  LNLRKLIGSVDDLLPSLPASSRTEIEGTQKLLNKDLAELINKMKLAQQNAVTSLS-EDCK 973

Query: 229  VEALQARDYQAVDVKDLLERMKQ 161
             + L A    AVD K+LL+ + Q
Sbjct: 974  RQMLTASHTLAVDAKNLLDAVDQ 996


>sp|Q08156|KIT_CHICK Mast/stem cell growth factor receptor OS=Gallus
           gallus GN=KIT PE=2 SV=1
          Length = 960

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 32/106 (30%), Positives = 47/106 (44%)
 Frame = -2

Query: 373 LDVKPSDSASVQALPKAKRKSRRLAAEVSKDEIVQTDDVAILSLEDCDVEALQARDYQAV 194
           +D+KP  S +V   PKA +K         K       DV +  LED         D  A+
Sbjct: 707 MDMKPGVSYAVP--PKADKK------RPVKSGSYTDQDVTLSMLED---------DELAL 749

Query: 193 DVKDLLERMKQLQKQLQFWRTKNWAEKHTGQGHIIPLPTYNQFTKV 56
           DV+DLL    Q+ K + F  +KN   +     +I  L T+ + TK+
Sbjct: 750 DVEDLLSFSYQVAKGMSFLASKNCIHRDLAARNI--LLTHGRITKI 793


>sp|P70600|FAK2_RAT Protein tyrosine kinase 2 beta OS=Rattus
            norvegicus GN=Ptk2b PE=1 SV=1
          Length = 1009

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = -2

Query: 403  LIIPKVSINVLDVKPSDSASVQALPKAKRK--SRRLAAEVSKDEIVQTDDVAILSLEDCD 230
            L + K+  +V D+ PS  AS +   +  +K  ++ LA  ++K  + Q + V  LS EDC 
Sbjct: 915  LNLRKLIGSVDDLLPSLPASSRTEIEGTQKLLNKDLAELINKMRLAQQNAVTSLS-EDCK 973

Query: 229  VEALQARDYQAVDVKDLLERMKQ 161
             + L A    AVD K+LL+ + Q
Sbjct: 974  RQMLTASHTLAVDAKNLLDAVDQ 996


>sp|Q14289|FAK2_HUMAN Protein tyrosine kinase 2 beta OS=Homo sapiens
            GN=PTK2B PE=1 SV=2
          Length = 1009

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
 Frame = -2

Query: 403  LIIPKVSINVLDVKPSDSASVQALPKAKRK--SRRLAAEVSKDEIVQTDDVAILSLEDCD 230
            L + K+  +V D+ PS  +S +   +  +K  ++ LA  ++K  + Q + V  LS E+C 
Sbjct: 915  LTLRKLIGSVDDLLPSLPSSSRTEIEGTQKLLNKDLAELINKMRLAQQNAVTSLS-EECK 973

Query: 229  VEALQARDYQAVDVKDLLERMKQ 161
             + L A    AVD K+LL+ + Q
Sbjct: 974  RQMLTASHTLAVDAKNLLDAVDQ 996


>sp|O74760|EIF3A_SCHPO Probable eukaryotic translation initiation
            factor 3 110 kDa subunit OS=Schizosaccharomyces pombe
            GN=tif32 PE=1 SV=1
          Length = 932

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 16/76 (21%), Positives = 44/76 (57%)
 Frame = -2

Query: 340  QALPKAKRKSRRLAAEVSKDEIVQTDDVAILSLEDCDVEALQARDYQAVDVKDLLERMKQ 161
            +A+ +A+ ++ R A E +  E+ + ++    ++E+    A +A++ +  ++ + LER ++
Sbjct: 788  EAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKEREQREMAEKLERQRR 847

Query: 160  LQKQLQFWRTKNWAEK 113
            +Q++     ++  AEK
Sbjct: 848  IQQERDEEISRKLAEK 863


>sp|Q7T019|DZIP1_DANRE Zinc finger protein Dzip1 OS=Danio rerio
           GN=dzip1 PE=2 SV=2
          Length = 898

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 217 QARDYQAVDVKDLLERMKQLQKQLQFWR 134
           Q +DY A   K+L++R ++ ++QL+ W+
Sbjct: 272 QQKDYTAKQEKELIQRQEEFKRQLEIWK 299


>sp|Q8RI94|DNLJ_FUSNN DNA ligase OS=Fusobacterium nucleatum subsp.
           nucleatum GN=ligA PE=3 SV=1
          Length = 696

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 21/133 (15%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
 Frame = -2

Query: 421 VSVENKLIIPKVSINVLD---VKPSDSASVQALPKAKRKSRRLAAEVSKDE--------I 275
           + +  ++++P  S   L+   ++  +         A    R+L +++ KD         +
Sbjct: 189 MEIRGEVVLPLASFEKLNNERLEKGEELFANPRNAASGTLRQLDSKIVKDRGLDAYFYFL 248

Query: 274 VQTDDVAILSLEDCDVEALQARDYQAVDVKDLLERMKQLQKQLQFWRTKNWAEKHTGQGH 95
           V+ D + + S  +  ++ L++   +   + +LLE  K ++K++ +W  +  +  +   G 
Sbjct: 249 VEADKLGLKSHSE-SIKFLESMGIKTTGIFELLETSKDIEKRINYWEKERESLPYETDGL 307

Query: 94  IIPLPTYNQFTKV 56
           +I +   N + ++
Sbjct: 308 VIKVDEINLWDEI 320


>sp|Q5ZMN3|PHB2_CHICK Prohibitin-2 OS=Gallus gallus GN=PHB2 PE=2
           SV=1
          Length = 301

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -2

Query: 310 RRLAAEVSKDEIVQTDDVAILSLE-----DCDVEALQARDYQAVDVKDLLERMKQLQKQ 149
           RR   E +KD  +  DDVAI  L         VEA Q    +A   + L+E+ KQ QKQ
Sbjct: 165 RRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQKQ 223


>sp|P16749|IE63_HCMVA Transcriptional regulator IE63 homolog
           OS=Human cytomegalovirus (strain AD169) GN=UL69 PE=3
           SV=1
          Length = 744

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
 Frame = +1

Query: 124 NS*FSKIVAASATVSFSPINPSHRQLDNHVLGEPQHHN-------------PPVIELQHH 264
           +S F + VAASA+V   P+NP + +  ++  GEP HH              P      H 
Sbjct: 132 SSSFKRRVAASASV---PLNPHYGKSYDNDDGEPHHHGGDSTHLRRRVPSCPTTFGSSHP 188

Query: 265 QSARFHLCSLQRPASETFF-LL*AELVQMPNQTVSRLTHL 381
            SA  H  S   P  +    L+  EL  M    + +L+ L
Sbjct: 189 SSANNHHGSSAGPQQQQMLALIDDELDAMDEDELQQLSRL 228
tr_hit_id Q9XS93
Definition tr|Q9XS93|Q9XS93_CANFA Tyrosine-protein kinase receptor OS=Canis familiaris
Align length 106
Score (bit) 35.4
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914998|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_C11.
         (566 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9XS93|Q9XS93_CANFA Tyrosine-protein kinase receptor OS=Canis...    35   2.2  
tr|Q23HA0|Q23HA0_TETTH Putative uncharacterized protein OS=Tetra...    35   2.2  
tr|A4Y1N6|A4Y1N6_SHEPC Diguanylate cyclase/phosphodiesterase wit...    34   6.4  
tr|A1RPZ8|A1RPZ8_SHESW Diguanylate cyclase/phosphodiesterase wit...    34   6.4  
tr|A2UXT9|A2UXT9_SHEPU Diguanylate cyclase/phosphodiesterase wit...    34   6.4  
tr|B4JVF0|B4JVF0_DROGR GH22685 OS=Drosophila grimshawi GN=GH2268...    34   6.4  
tr|A9TB07|A9TB07_PHYPA SNF2 family DNA-dependent ATPase OS=Physc...    33   8.3  
tr|Q0UIF5|Q0UIF5_PHANO Putative uncharacterized protein OS=Phaeo...    33   8.3  

>tr|Q9XS93|Q9XS93_CANFA Tyrosine-protein kinase receptor OS=Canis
           familiaris GN=c-kit PE=2 SV=1
          Length = 978

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 29/106 (27%), Positives = 48/106 (45%)
 Frame = -2

Query: 373 LDVKPSDSASVQALPKAKRKSRRLAAEVSKDEIVQTDDVAILSLEDCDVEALQARDYQAV 194
           +D+KP DS  V      KR+SRR+ + + +D                   A+   D  A+
Sbjct: 724 MDMKPGDSYVVPTKAD-KRRSRRIGSYIERDV----------------TPAIMEDDELAL 766

Query: 193 DVKDLLERMKQLQKQLQFWRTKNWAEKHTGQGHIIPLPTYNQFTKV 56
           D++DLL    Q+ K + F  +KN   +     +I  L T+ + TK+
Sbjct: 767 DLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNI--LLTHGRITKI 810


>tr|Q23HA0|Q23HA0_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00819450 PE=4
           SV=1
          Length = 644

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 23/95 (24%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
 Frame = -2

Query: 415 VENKLIIPKVSINVLDVKPSDSASVQALPKAKRKSRRLAAEVSKDEIVQTDDVA-----I 251
           +++K+ + + ++N++     +   + +L K +RK   L      ++I+Q D  +     +
Sbjct: 218 LKDKIELTEKNLNIIQQVLQNILFLISLEKKQRKQYILE---HVEDIIQKDYESEKLKQL 274

Query: 250 LSLEDCDVEALQARDYQAVDVKDLLERMKQLQKQL 146
           L L   +++  + + Y+ +D+K LL++ KQL+KQL
Sbjct: 275 LKLNQKEIQKAKIQKYEILDLKSLLQQEKQLKKQL 309


>tr|A4Y1N6|A4Y1N6_SHEPC Diguanylate cyclase/phosphodiesterase with
           PAS/PAC sensor(S) OS=Shewanella putrefaciens (strain
           CN-32 / ATCC BAA-453) GN=Sputcn32_0133 PE=3 SV=1
          Length = 1077

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 94  YALAPYASLPNS*FSKIVAASATVSFSPINPSHRQLDNHVLGEPQHHNPPVIELQHHQ 267
           +AL+  A++ N     IV   A      INP+  Q+  + L E + HNP ++  + HQ
Sbjct: 506 HALSRAAAVFNYSAEGIVVTDAENHIELINPAFTQITGYTLNEIKGHNPSILSAKRHQ 563


>tr|A1RPZ8|A1RPZ8_SHESW Diguanylate cyclase/phosphodiesterase with
           PAS/PAC sensor(S) OS=Shewanella sp. (strain W3-18-1)
           GN=Sputw3181_3939 PE=3 SV=1
          Length = 1077

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 94  YALAPYASLPNS*FSKIVAASATVSFSPINPSHRQLDNHVLGEPQHHNPPVIELQHHQ 267
           +AL+  A++ N     IV   A      INP+  Q+  + L E + HNP ++  + HQ
Sbjct: 506 HALSRAAAVFNYSAEGIVVTDAENHIELINPAFTQITGYTLNEIKGHNPSILSAKRHQ 563


>tr|A2UXT9|A2UXT9_SHEPU Diguanylate cyclase/phosphodiesterase with
           PAS/PAC sensor(S) OS=Shewanella putrefaciens 200
           GN=Sput200DRAFT_0638 PE=3 SV=1
          Length = 1077

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 94  YALAPYASLPNS*FSKIVAASATVSFSPINPSHRQLDNHVLGEPQHHNPPVIELQHHQ 267
           +AL+  A++ N     IV   A      INP+  Q+  + L E + HNP ++  + HQ
Sbjct: 506 HALSRAAAVFNYSAEGIVVTDAENHIELINPAFTQITGYTLNEIKGHNPSILSAKRHQ 563


>tr|B4JVF0|B4JVF0_DROGR GH22685 OS=Drosophila grimshawi GN=GH22685
           PE=4 SV=1
          Length = 335

 Score = 33.9 bits (76), Expect = 6.4
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
 Frame = -2

Query: 346 SVQALPKAKRKSRRLAAEVSKDEIVQTDDVAILSLEDCDVEALQARDYQAVDVKDLLERM 167
           S+Q+  + +++S  L    SKD ++Q+            ++  + RD  A++ KDLL+ M
Sbjct: 180 SLQSYAQKEQRSSHLDRRASKDALLQSRHYIFTEARSVSLDRFKRRDDLAIESKDLLKIM 239

Query: 166 KQ---LQKQLQFWRTKNWAEKHTGQGHIIPLPTYNQFTKVDVAP 44
           ++   + +  + +     +E   G+   +PL     +  V VAP
Sbjct: 240 RKQSTIAEPARIYHPAKLSEPIRGRRLSVPLSI--NYQTVHVAP 281


>tr|A9TB07|A9TB07_PHYPA SNF2 family DNA-dependent ATPase
           OS=Physcomitrella patens subsp. patens GN=CHR1524 PE=4
           SV=1
          Length = 657

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 21/98 (21%), Positives = 46/98 (46%)
 Frame = -2

Query: 358 SDSASVQALPKAKRKSRRLAAEVSKDEIVQTDDVAILSLEDCDVEALQARDYQAVDVKDL 179
           S+   + AL K+    RRL  +V  +   +      +SLED  +  ++A  ++  ++KD 
Sbjct: 408 SNLQELHALVKSTVMIRRLKKDVLSELPQKRRQQVFVSLEDKGIRHMKALFHELNEIKDA 467

Query: 178 LERMKQLQKQLQFWRTKNWAEKHTGQGHIIPLPTYNQF 65
           ++  K+ +K+   +  K    K   +  ++ LP   ++
Sbjct: 468 MKLCKEDEKERMKYSEKQLLNKIYTESAVVKLPAVQEY 505


>tr|Q0UIF5|Q0UIF5_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_08459 PE=3 SV=2
          Length = 411

 Score = 33.5 bits (75), Expect = 8.3
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -2

Query: 364 KPSDSASVQALPKAKRKSRRLAAEVSKDEIVQTDDVAILSLEDCDVEALQA-RDYQAVDV 188
           K  D    + + + KR   RLAA  S++   Q            + E LQA +D    D+
Sbjct: 101 KTEDEKEQRRIERVKRN--RLAAHNSRERKRQ------------EYEVLQAEKDQMEADL 146

Query: 187 KDLLERMKQLQKQLQFWRTK 128
           K   ERM Q++ +L+F+R+K
Sbjct: 147 KSYKERMAQMEAELKFYRSK 166