NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915000
Clone id YMU001_000065_D01
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000065_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGAATGATGAACTGCAAATTGTATCTGAAGGAACTTCATCGGAACTAAGAGTGAAACTGT
AACTGATCTTCAAATGTCTGGAACAAATCCTGAGGGAGTATCACCCCAATCTCAAAGTGA
ATTGGGAACAAACATCCAGTAGAAAGGAACACACATCAATATGGAGATTGCAACTAACAC
GGCAAGATCAAAAGAAGATCCTGCTACCAAGCTCTGCAAGAGAGGAACAAGGTGCTGTAG
AAAGCCACCAAATAGGCTGTCAATCCTGCTCGTTGCACATGGAACCACAAGAATTGTAAG
GAAGTAATCCGCGGAAACTGACTCCCAAGCTGGTGCCACATCGCCCTCTGAAGGGAGAAT
ACTCGAACCATTGATAAGCGTAATAACTCTCCAATAGTCTCTGCGTGTGTAGCTGAATCA
CCAAGGGAGGTGAATCCAAATGAAAATATACTTGTGGAACACACATCAATATGGAGACTG
CAACTAACACGGCAAGATAACCAGAAGATCCTGCTACCAAGCTCTACAACAGAGGAACAA
GGTGCTGTAG
■■Homology search results ■■ -
sp_hit_id P25173
Definition sp|P25173|VP4_ROTB4 Outer capsid protein VP4 OS=Rotavirus A (strain Cow/United States/B641/198? G6-P7[5]-Ix-Rx-Cx-Mx-A3-Nx-Tx-Ex-Hx)
Align length 39
Score (bit) 34.3
E-value 0.41
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915000|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_D01.
         (550 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P25173|VP4_ROTB4 Outer capsid protein VP4 OS=Rotavirus A (str...    34   0.41 
sp|P12474|VP4_ROTBU Outer capsid protein VP4 OS=Rotavirus A (str...    33   1.2  
sp|Q9H2D6|TARA_HUMAN TRIO and F-actin-binding protein OS=Homo sa...    31   3.5  
sp|Q8H0W9|CAP17_ARATH Putative clathrin assembly protein At5g104...    31   3.5  
sp|P57648|Y588_BUCAI Uncharacterized transporter BU588 OS=Buchne...    31   4.5  
sp|O13818|YEE2_SCHPO Uncharaterized PH domain-containing protein...    31   4.6  
sp|Q5HBQ7|MUTS_EHRRW DNA mismatch repair protein mutS OS=Ehrlich...    30   6.0  
sp|A9HWW6|SYL_BORPD Leucyl-tRNA synthetase OS=Bordetella petrii ...    30   7.7  
sp|Q15VI3|RLMF_PSEA6 Ribosomal RNA large subunit methyltransfera...    30   7.7  
sp|Q5R5R2|HEAT6_PONAB HEAT repeat-containing protein 6 OS=Pongo ...    30   7.8  
sp|Q6AI08|HEAT6_HUMAN HEAT repeat-containing protein 6 OS=Homo s...    30   7.8  

>sp|P25173|VP4_ROTB4 Outer capsid protein VP4 OS=Rotavirus A (strain
           Cow/United States/B641/198?
           G6-P7[5]-Ix-Rx-Cx-Mx-A3-Nx-Tx-Ex-Hx) GN=S4 PE=3 SV=2
          Length = 776

 Score = 34.3 bits (77), Expect = 0.41
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 379 RNNSPIVSACVAESPREVNPNENILVEHTSIWR-LQLTR 492
           RN  P+  +  +  PR+V PNE+I+V  TS+W+ LQ  R
Sbjct: 231 RNVVPLAISSRSIKPRKVQPNEDIVVSKTSLWKELQYNR 269


>sp|P12474|VP4_ROTBU Outer capsid protein VP4 OS=Rotavirus A (strain
           Cow/United Kingdom/UK/1975
           G6-P7[5]-I2-R2-C2-M2-A3-N2-T7-E2-H3) GN=S4 PE=3 SV=1
          Length = 776

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 379 RNNSPIVSACVAESPREVNPNENILVEHTSIWR 477
           RN  P+  +  +  PREV  NE+I+V  TS+W+
Sbjct: 231 RNVVPVAISSRSIKPREVQANEDIVVSKTSLWK 263


>sp|Q9H2D6|TARA_HUMAN TRIO and F-actin-binding protein OS=Homo
           sapiens GN=TRIOBP PE=1 SV=3
          Length = 2365

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +1

Query: 364 RTIDKRNNSPIVSACVAESPREVNPNENILVEHTSIWRLQLTRQDNQKILLPSSTTEE 537
           RTI + N  P  S    ++PR  +PN  I  E+    R   TRQDN +   P+  T +
Sbjct: 737 RTIQRDN--PRTSCAQRDNPRASSPNRTIQQENL---RTSCTRQDNPRTSSPNRATRD 789


>sp|Q8H0W9|CAP17_ARATH Putative clathrin assembly protein At5g10410
           OS=Arabidopsis thaliana GN=At5g10410 PE=2 SV=2
          Length = 338

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 331 WCHIAL*RENTRTIDKRNNSPIVSACVAESPREVNPNENILVEHTSIWRLQLTR 492
           + H+AL +  TRT +K  NS  VSA ++ S     P         ++WRL++T+
Sbjct: 34  YIHLALLKSTTRTPNKPPNSDYVSAVISYSNSRYAP----AAFSAALWRLRVTK 83


>sp|P57648|Y588_BUCAI Uncharacterized transporter BU588 OS=Buchnera
           aphidicola subsp. Acyrthosiphon pisum GN=BU588 PE=3 SV=1
          Length = 410

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = -3

Query: 476 LHIDVCSTSIFSFGFTSLGDSATHAETIGELLRLSMVRVFSLQRAMWHQLGSQFPRITSL 297
           L I +    IFS GF      +T +  +G    ++ ++  SL    ++   S F      
Sbjct: 315 LFIIILGLIIFSGGF--FASHSTASSWVGSYSNIAKIQATSLYLFFYYLGSSVFGTFGG- 371

Query: 296 QFLWFHVQRAGLTAYLVA-FYSTLFLS 219
            F WFH+Q  G++ +++   +  +FLS
Sbjct: 372 -FFWFHMQWLGISVFIITMLFFGVFLS 397


>sp|O13818|YEE2_SCHPO Uncharaterized PH domain-containing protein
           C19A8.02 OS=Schizosaccharomyces pombe GN=SPAC19A8.02
           PE=2 SV=1
          Length = 1213

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 459 FHKYIFIWIHLPW*FSYTRRDYWRVIT 379
           +H YI  W+H  W   Y  RDY++++T
Sbjct: 864 YHLYIMTWLHHSWTLPY--RDYFKIVT 888


>sp|Q5HBQ7|MUTS_EHRRW DNA mismatch repair protein mutS OS=Ehrlichia
           ruminantium (strain Welgevonden) GN=mutS PE=3 SV=1
          Length = 804

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 175 SCNLHIDVCSFLLDVCSQFTLRLG*YSLRIC 83
           +C L   +C F +D+ S+F LRLG Y   IC
Sbjct: 378 TCELVELLCKFNIDIISEFCLRLGRYEDLIC 408


>sp|A9HWW6|SYL_BORPD Leucyl-tRNA synthetase OS=Bordetella petrii
           (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=leuS
           PE=3 SV=1
          Length = 885

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -3

Query: 413 ATHAETIGELLRLSMVRVFSLQRAMWHQLGSQFPRITSLQFLWFHVQRAGLTA 255
           A  AET+G LLR+    V  +   +W +LG        L   W HV  A L A
Sbjct: 771 AARAETLGVLLRVLYPVVPHVTWLLWRELGYTHSLGDLLDAPWPHVDEAALVA 823


>sp|Q15VI3|RLMF_PSEA6 Ribosomal RNA large subunit methyltransferase
           F OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087)
           GN=rlmF PE=3 SV=1
          Length = 330

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 527 VELGSRIFWLSCRVSCSLHIDVCSTSIFSFG 435
           VE  S++ W +C VS SLH+    TS   FG
Sbjct: 275 VEYQSQVGWFTCLVSKSLHLKAIETSARYFG 305


>sp|Q5R5R2|HEAT6_PONAB HEAT repeat-containing protein 6 OS=Pongo
           abelii GN=HEATR6 PE=2 SV=1
          Length = 1181

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 21/76 (27%), Positives = 36/76 (47%)
 Frame = -2

Query: 357 LPSEGDVAPAWESVSADYFLTILVVPCATSRIDSLFGGFLQHLVPLLQSLVAGSSFDLAV 178
           +P +  +   +++V    FLTIL  P ++   D  F   LQ+ +  +QSL+ G    L  
Sbjct: 196 VPGQPYLEEPYQNVCFQAFLTILQSPKSSDMDDITFCMLLQNALKGIQSLLNGGRMKLTQ 255

Query: 177 LVAISILMCVPFYWMF 130
              +  L+ V   +MF
Sbjct: 256 TDELGALLAVLKKFMF 271
tr_hit_id A2FR74
Definition tr|A2FR74|A2FR74_TRIVA Putative uncharacterized protein OS=Trichomonas vaginalis G3
Align length 55
Score (bit) 36.6
E-value 0.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915000|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_D01.
         (550 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2FR74|A2FR74_TRIVA Putative uncharacterized protein OS=Trich...    37   0.90 
tr|Q4QBQ4|Q4QBQ4_LEIMA Putative uncharacterized protein OS=Leish...    34   4.5  
tr|Q6A852|Q6A852_PROAC Putative DNA helicase II homolog OS=Propi...    34   5.9  
tr|B1T0P7|B1T0P7_9BURK Sodium/glutamate symporter OS=Burkholderi...    34   5.9  
tr|Q23UC7|Q23UC7_TETTH Putative uncharacterized protein OS=Tetra...    33   7.5  
tr|Q4SK11|Q4SK11_TETNG Chromosome 10 SCAF14571, whole genome sho...    33   9.8  
tr|Q30KM5|Q30KM5_MOUSE Beta-defensin 52 (Fragment) OS=Mus muscul...    33   10.0 
tr|A1A4N1|A1A4N1_BOVIN Solute carrier family 29 (Nucleoside tran...    33   10.0 
tr|B0E9Y2|B0E9Y2_ENTDI Putative uncharacterized protein OS=Entam...    33   10.0 

>tr|A2FR74|A2FR74_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_496240 PE=4 SV=1
          Length = 1167

 Score = 36.6 bits (83), Expect = 0.90
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = +1

Query: 373 DKRNNSPIVSACVAESPREVNPNE--NILVEHTSIWRLQLTRQDNQKILLPSSTT 531
           + +NNS I  A + +S  ++ PNE  N++ ++  I +L  T  D +K ++P S+T
Sbjct: 597 EMKNNSNIFKAFILDSALQIAPNEWWNLIKKNPEILKLNFTENDFKKSMIPISST 651


>tr|Q4QBQ4|Q4QBQ4_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF22.0930 PE=4 SV=1
          Length = 718

 Score = 34.3 bits (77), Expect = 4.5
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = -2

Query: 255 LFGGFLQHLVPLLQSLVAGSSFDLAVLVAIS------ILMCVPFYWMFVPN 121
           LF G L+ + PLL+S + GSS  L ++V +       I+   PF+++ VPN
Sbjct: 59  LFAGLLRVVRPLLESWIMGSSVTLGMVVGLPYIQRNIIVQLPPFFFVEVPN 109


>tr|Q6A852|Q6A852_PROAC Putative DNA helicase II homolog
           OS=Propionibacterium acnes GN=PPA1314 PE=4 SV=1
          Length = 706

 Score = 33.9 bits (76), Expect = 5.9
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -2

Query: 402 RDYWRVITLINGSSILPS-EGDVAPAWESVSADYFLTILVVPCATSRIDSLFGGFLQHLV 226
           R + R++     S+I P  EGDV   WES+ A + LT+ VV   T  ++ L   F +   
Sbjct: 434 RAFDRILAAQGWSAIAPDGEGDVRQRWESLQALHDLTVSVVDDGTRTLEELAAVFSRRAA 493

Query: 225 PLLQSLVAGSSFDLAVLVA 169
              Q    G    LA L A
Sbjct: 494 --TQEAPVGDGVTLATLHA 510


>tr|B1T0P7|B1T0P7_9BURK Sodium/glutamate symporter OS=Burkholderia
           ambifaria MEX-5 GN=BamMEX5DRAFT_1363 PE=4 SV=1
          Length = 411

 Score = 33.9 bits (76), Expect = 5.9
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = -2

Query: 222 LLQSLVAGSSFDLAVLVAISILMCVPFYWMFVPNSL*DWGDTPSGFVPDI*RSVTVSLLV 43
           +++SL+ G++F+L   V      CV F  + + N L  +G  PSG    +  +V++SL +
Sbjct: 245 VIESLIRGTAFELPTFV------CVLFVGVVLSNGLAAFGHRPSGHAVSLLGNVSLSLFL 298

Query: 42  PMKFLQIQ 19
            M  + ++
Sbjct: 299 AMALMTLR 306


>tr|Q23UC7|Q23UC7_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00797990 PE=4
           SV=1
          Length = 834

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
 Frame = +3

Query: 132 TSSRKEHTSIWRLQLTRQDQKKILLPSSAREEQGAVESHQIG----CQSCSLHMEPQEL* 299
           + +R EH S  + Q  +Q+ K+ L   S  ++   +  H I      QS  +H    ++ 
Sbjct: 16  SQARTEHKSQGQHQFNKQNLKENLEQPSQSQQPQTLHQHHIQNQNQVQSQQIHQNQHQIL 75

Query: 300 GSNPRKLTPKLVPHRPLKGEYSN 368
           G++ RKL PK VP   ++   +N
Sbjct: 76  GASNRKLVPK-VPQETVQNLKAN 97


>tr|Q4SK11|Q4SK11_TETNG Chromosome 10 SCAF14571, whole genome
           shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00016951001 PE=4 SV=1
          Length = 651

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 23/75 (30%), Positives = 33/75 (44%)
 Frame = +3

Query: 102 HPNLKVNWEQTSSRKEHTSIWRLQLTRQDQKKILLPSSAREEQGAVESHQIGCQSCSLHM 281
           H  L   W+     K+  S+    LT + Q   L+PS +REE   V    + C+   LH+
Sbjct: 228 HDRLLSVWQVREDGKDKNSVVSFALTDEPQHIDLIPSKSREE---VMRLAVVCKDGQLHL 284

Query: 282 EPQEL*GSNPRKLTP 326
               L G   + LTP
Sbjct: 285 FEHFLNGPCKKPLTP 299


>tr|Q30KM5|Q30KM5_MOUSE Beta-defensin 52 (Fragment) OS=Mus musculus
           GN=Defb52 PE=2 SV=1
          Length = 68

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +2

Query: 89  PEGVSPQSQSELGTNIQ*KGTHINMEIATNTARSKEDPATKLCKRGTRCCRKP 247
           PEG   + Q+E     Q KGT IN  I        + P T   +R T+C R P
Sbjct: 1   PEGCKQERQNEWKDLAQKKGTFINAFINNYEHHYCDSPTTVCLRRKTKCIRMP 53


>tr|A1A4N1|A1A4N1_BOVIN Solute carrier family 29 (Nucleoside
           transporters), member 3 OS=Bos taurus GN=SLC29A3 PE=2
           SV=1
          Length = 474

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
 Frame = -2

Query: 429 LPW*FSYTRRDYWRVITLINGSSILPSEGDVAPAWESVSADYFLTILVVPCATSRIDSLF 250
           LPW F  T ++YW +  L N SS  P+ G+     +S   +YF + L V      +  L 
Sbjct: 66  LPWNFFVTAQEYW-IFKLSNCSS--PAAGEEPK--DSDILNYFESYLAVASTVPSVLCLA 120

Query: 249 GGF-LQHLVPLLQSLVAGSSFDLAVLVAISILMCV 148
             F L + VP+   ++A  +  LA+ + +++L+ V
Sbjct: 121 LNFLLVNRVPIRVRVLASLTVMLAIFIVMTVLVKV 155


>tr|B0E9Y2|B0E9Y2_ENTDI Putative uncharacterized protein
           OS=Entamoeba dispar SAW760 GN=EDI_021970 PE=4 SV=1
          Length = 507

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 6/149 (4%)
 Frame = -1

Query: 454 QVYFHLDSPPLVIQLHTQRLLESYYAYQWFEYSPFRGRCGTSL--GVSFRGLLPYNSCGS 281
           Q+Y   D+P L ++LH+Q+L+E Y   Q+ +  P +              G   YN    
Sbjct: 90  QLYIRYDNPNL-LKLHSQQLIEKYCMNQYLKSIPMKSCLKNEFERKTKVPGYYIYNYGIV 148

Query: 280 MCNEQD*QPIWWLSTAPCS-SLAELGSRIF--F*SCRVSCNLHIDVCSFLLDV-CSQFTL 113
             NE   + I + +  PC  SL +    I     +  +  N+HI   +FL D+      L
Sbjct: 149 GINESKFEDIVYTAHIPCMISLIDQQFPIISVTFTMLIPSNIHISNNTFLWDIFLDNLNL 208

Query: 112 RLG*YSLRICSRHLKISYSFTLSSDEVPS 26
               + L+    H K   S+ L +D + S
Sbjct: 209 LFFEFQLKHLEEHGKNIESYKLLNDSLTS 237