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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915001
Clone id YMU001_000065_D02
Library
Length 587
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000065_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAAGCAGCACTCACAATCTCGAAGTCGTTGAGCTACACCGGCATTACTCCTGCATTTTG
ACCAAATAATACAAGCACACAAGCTCTCCATCACCGTTCTACGAAAGCAGTTTGTGTAGA
CCGGACCGGGTAGAAGCGGCGGCAGACAAATAGAGGCTCGCGGCAGCGACGTTACTTTGG
TTTTCTCTGCGCAGCACAACAAATTGGGGTTTCTGGGACGGCGACGATCTTTTCTCTTTT
CCTGCACTGCTGACGCGACTACGGCAGACAGACAGGGGATTGCGGAATGTGAATTAGCAT
GTGAACCAAGAATTAACCTGCACAGTGTTTTCAACAAGAAGCGTGCACTTCCGCAGCCTG
CAGATATGCATCCCCAATCATCACAACCCCCTTCCAAGTCCCAGGCTTTCTCGGTAGCCC
AACAGGCAGTTGAAGCGCTAGGACGTGGCTACGATGTTACTTGTGACTTGTGGCTCAGTT
ACTGCAAAAGTGGGGAGCGCTTGATCGCCAATGACAATAGCAGCTCTACCCAAGACCTCC
ACCTTCCTGGAAATATTCTCATTCCTAATGTTTCTATATCTATAAAA
■■Homology search results ■■ -
sp_hit_id Q8K3K1
Definition sp|Q8K3K1|USH2A_RAT Usherin OS=Rattus norvegicus
Align length 26
Score (bit) 33.1
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915001|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_D02.
         (587 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K3K1|USH2A_RAT Usherin OS=Rattus norvegicus GN=Ush2a PE=1 SV=1    33   1.1  
sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=1       32   2.3  
sp|Q589G4|AS19_ANOSM Toxin As-fr-19 OS=Anoplius samariensis GN=A...    32   2.3  
sp|P59511|ATS20_MOUSE A disintegrin and metalloproteinase with t...    30   6.8  
sp|Q7TSK7|ATL2_MOUSE ADAMTS-like protein 2 OS=Mus musculus GN=Ad...    30   6.8  
sp|A5CYE3|ATPG_PELTS ATP synthase gamma chain OS=Pelotomaculum t...    30   8.9  

>sp|Q8K3K1|USH2A_RAT Usherin OS=Rattus norvegicus GN=Ush2a PE=1 SV=1
          Length = 1512

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 326  CFQQEACTSAACRYASPIITTPFQVP 403
            CF  + CT+ +C Y+SPI  T  Q P
Sbjct: 1213 CFSVQGCTNGSCLYSSPITVTTAQAP 1238


>sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=1
          Length = 5193

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 326  CFQQEACTSAACRYASPIITTPFQVP 403
            CF  + CT+ +C Y+ PII T  Q P
Sbjct: 1214 CFSVQGCTNESCFYSLPIIVTTAQAP 1239


>sp|Q589G4|AS19_ANOSM Toxin As-fr-19 OS=Anoplius samariensis
           GN=Asfr19 PE=1 SV=1
          Length = 75

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = -2

Query: 154 SICLPPLLPGPVYTNCFRRTVMESLCAC--IIWSKCRSNAGVAQRLRDCE 11
           S CL P++PGP      R     S+ AC    +  C  N       RDCE
Sbjct: 19  SFCLLPIVPGPCTQYVIRYAFQPSISACRRFTFGGCEGNDNNFMTRRDCE 68


>sp|P59511|ATS20_MOUSE A disintegrin and metalloproteinase with
            thrombospondin motifs 20 OS=Mus musculus GN=Adamts20 PE=2
            SV=1
          Length = 1906

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 448  PRPSASTACWATEKAWDLEGGCDDWGCISAGCGSARFLLKTLC 320
            PRP+A + C++    W       DW   SA CG  +   + LC
Sbjct: 1192 PRPAAVSLCFSPCGEWQ----AGDWSPCSASCGHGKTTRRVLC 1230


>sp|Q7TSK7|ATL2_MOUSE ADAMTS-like protein 2 OS=Mus musculus
           GN=Adamtsl2 PE=2 SV=1
          Length = 957

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -2

Query: 184 KTKVTSLPRASICLPPLLPGPVYTNCFRRTVMESLCACIIWSKCRSNAGVAQRLRDCEC 8
           K ++ S P   +   P    P  + CF R   +   +   WS+C    GV  R+RD +C
Sbjct: 834 KPQIRSGPECGLARKP----PEESTCFERPCFKWYTSP--WSECTKTCGVGVRMRDVKC 886


>sp|A5CYE3|ATPG_PELTS ATP synthase gamma chain OS=Pelotomaculum
           thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
           GN=atpG PE=3 SV=1
          Length = 284

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -1

Query: 548 RKVEVLGRAAIVIGDQALPTFAVTEPQVTSNIVATS*RFNC 426
           R   VLGR A+  G  + P  AV EP+  + IV T+ R  C
Sbjct: 48  RLKSVLGRVAVASGGVSHPLLAVREPKKVAYIVITADRGLC 88
tr_hit_id A9THA4
Definition tr|A9THA4|A9THA4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 63
Score (bit) 60.8
E-value 5.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915001|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_D02.
         (587 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9THA4|A9THA4_PHYPA Predicted protein OS=Physcomitrella paten...    61   5e-08
tr|A9SVK9|A9SVK9_PHYPA Predicted protein OS=Physcomitrella paten...    60   9e-08
tr|A7QPT0|A7QPT0_VITVI Chromosome chr10 scaffold_138, whole geno...    54   8e-06
tr|A5B2K6|A5B2K6_VITVI Putative uncharacterized protein OS=Vitis...    54   8e-06
tr|Q1SKW8|Q1SKW8_MEDTR Membrane attack complex component/perfori...    52   2e-05
tr|A7QFM8|A7QFM8_VITVI Chromosome chr8 scaffold_88, whole genome...    51   6e-05
tr|A7QC79|A7QC79_VITVI Chromosome undetermined scaffold_77, whol...    50   7e-05
tr|Q9STW5|Q9STW5_ARATH Putative uncharacterized protein AT4g2429...    50   1e-04
tr|Q3E9W8|Q3E9W8_ARATH Uncharacterized protein At4g24290.1 OS=Ar...    50   1e-04
tr|B3DN86|B3DN86_ARATH At4g24290 OS=Arabidopsis thaliana PE=2 SV=1     50   1e-04
tr|A7QDD2|A7QDD2_VITVI Chromosome chr10 scaffold_81, whole genom...    49   2e-04
tr|Q9SGN6|Q9SGN6_ARATH F3M18.18 (Putative uncharacterized protei...    48   5e-04
tr|Q7XID1|Q7XID1_ORYSJ Os07g0166100 protein OS=Oryza sativa subs...    48   5e-04
tr|B8B7L4|B8B7L4_ORYSI Putative uncharacterized protein OS=Oryza...    48   5e-04
tr|A3BGX1|A3BGX1_ORYSJ Putative uncharacterized protein OS=Oryza...    48   5e-04
tr|Q9LQV3|Q9LQV3_ARATH F10B6.18 OS=Arabidopsis thaliana PE=4 SV=1      47   6e-04
tr|Q8L612|Q8L612_ARATH Putative uncharacterized protein At1g1478...    47   6e-04
tr|Q9C7N2|Q9C7N2_ARATH Putative uncharacterized protein F15D2.24...    46   0.001
tr|Q940R0|Q940R0_ARATH At1g29690/F15D2_24 OS=Arabidopsis thalian...    46   0.001
tr|Q5JN47|Q5JN47_ORYSJ Putative uncharacterized protein P0401G10...    46   0.001
tr|A2WZA8|A2WZA8_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.001
tr|A7P3X2|A7P3X2_VITVI Chromosome chr1 scaffold_5, whole genome ...    45   0.002
tr|A5BZ68|A5BZ68_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|B8AWH2|B8AWH2_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.003
tr|Q6Z745|Q6Z745_ORYSJ Os02g0736300 protein OS=Oryza sativa subs...    42   0.020
tr|A2X9D1|A2X9D1_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.020
tr|Q6I604|Q6I604_ORYSJ Os05g0557400 protein OS=Oryza sativa subs...    42   0.026
tr|B4FA40|B4FA40_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.026
tr|A3B6P6|A3B6P6_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.026
tr|Q1ENV4|Q1ENV4_MUSAC Putative uncharacterized protein OS=Musa ...    41   0.057

>tr|A9THA4|A9THA4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_145591 PE=4 SV=1
          Length = 656

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
 Frame = +3

Query: 405 AFSVAQQAVEALGRGYDVTCDLWLSYCK--SGERLIANDNSSSTQDLHLPGNILIPNVSI 578
           A  VA  A  ALG+G+DVT D  L++ K  SG RL+  D  + TQD++ PGN++IPNVSI
Sbjct: 113 ALKVALDAANALGKGFDVTSDFRLAFAKGSSGSRLVEIDEEN-TQDIYAPGNVVIPNVSI 171

Query: 579 SIK 587
            I+
Sbjct: 172 DIR 174


>tr|A9SVK9|A9SVK9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_136022 PE=4 SV=1
          Length = 574

 Score = 60.1 bits (144), Expect = 9e-08
 Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
 Frame = +3

Query: 405 AFSVAQQAVEALGRGYDVTCDLWLSYCK--SGERLIANDNSSSTQDLHLPGNILIPNVSI 578
           A+ VA  A  ALGRG+DVT D+ L + K  SG RL+  D  ++TQD+  PGN++IPNVS+
Sbjct: 27  AWKVAVDAANALGRGFDVTSDIRLGFAKGSSGSRLVEID-ETNTQDIVAPGNVVIPNVSV 85

Query: 579 SI 584
            I
Sbjct: 86  DI 87


>tr|A7QPT0|A7QPT0_VITVI Chromosome chr10 scaffold_138, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00003061001
           PE=4 SV=1
          Length = 606

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
 Frame = +3

Query: 411 SVAQQAVEALGRGYDVTCDLWLSYCKSG---ERLIANDNSSSTQDLHLPGNILIPNVSIS 581
           S A +AV  +G GYD++ D+ LS CKSG    RLI  D  + T+DL LPG I++P+VS S
Sbjct: 6   SAAVKAVSVIGCGYDLSTDIRLSGCKSGPSFSRLIDLD-QALTRDLVLPGGIIVPDVSSS 64

Query: 582 IK 587
           IK
Sbjct: 65  IK 66


>tr|A5B2K6|A5B2K6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023707 PE=4 SV=1
          Length = 843

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
 Frame = +3

Query: 411 SVAQQAVEALGRGYDVTCDLWLSYCKSG---ERLIANDNSSSTQDLHLPGNILIPNVSIS 581
           S A +AV  +G GYD++ D+ LS CKSG    RLI  D  + T+DL LPG I++P+VS S
Sbjct: 243 SAAVKAVSVIGCGYDLSTDIRLSGCKSGPSFSRLIDLD-QALTRDLVLPGGIIVPDVSSS 301

Query: 582 IK 587
           IK
Sbjct: 302 IK 303


>tr|Q1SKW8|Q1SKW8_MEDTR Membrane attack complex
           component/perforin/complement C9 OS=Medicago truncatula
           GN=MtrDRAFT_AC140550g15v2 PE=4 SV=1
          Length = 610

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
 Frame = +3

Query: 405 AFSVAQQAVEALGRGYDVTCDLWLSYCKSG---ERLIANDNSSSTQDLHLPGNILIPNVS 575
           A  VA+ A+ ++GRGYD++ D+ L +CK      RLI  D  +  +++ LPG + +PNVS
Sbjct: 8   AHKVAEIAIGSIGRGYDISSDIRLKFCKGDSIHSRLIEIDEDNDLREVVLPGGVSLPNVS 67

Query: 576 ISIK 587
             IK
Sbjct: 68  KLIK 71


>tr|A7QFM8|A7QFM8_VITVI Chromosome chr8 scaffold_88, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037483001
           PE=4 SV=1
          Length = 555

 Score = 50.8 bits (120), Expect = 6e-05
 Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
 Frame = +3

Query: 405 AFSVAQQAVEALGRGYDVTCDLWLSYCK--SGERLIANDNSSSTQDLHLPGNILIPNVSI 578
           A   A  +V+ALGRG+DV  D  L YCK  +G R++  D    T+DL L  N+L+PNVS 
Sbjct: 7   ALHTALNSVQALGRGFDVNFDTRLLYCKGGAGSRVVEVD-EEHTKDLCLYDNLLVPNVSR 65

Query: 579 SIK 587
            IK
Sbjct: 66  DIK 68


>tr|A7QC79|A7QC79_VITVI Chromosome undetermined scaffold_77, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035282001 PE=4 SV=1
          Length = 603

 Score = 50.4 bits (119), Expect = 7e-05
 Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
 Frame = +3

Query: 405 AFSVAQQAVEALGRGYDVTCDLWLSYCKS---GERLIANDNSSSTQDLHLPGNILIPNVS 575
           A   A+ A+ ++GRGYD++ DL L YCK      RLI  D   S +++ LPG I IPN S
Sbjct: 7   AEKAAEIAIGSIGRGYDISDDLRLKYCKGDLVDSRLIEID-EESVREIVLPGGISIPNAS 65

Query: 576 ISIK 587
            SIK
Sbjct: 66  KSIK 69


>tr|Q9STW5|Q9STW5_ARATH Putative uncharacterized protein AT4g24290
           OS=Arabidopsis thaliana GN=T22A6.120 PE=2 SV=1
          Length = 606

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = +3

Query: 405 AFSVAQQAVEALGRGYDVTCDLWLSYCKSG---ERLIANDNSSSTQDLHLPGNILIPNVS 575
           A   A+ A+ ++G GYD+  DL L YCK G    RL+         ++ LPG I IPNVS
Sbjct: 7   ASKAAEVAIGSIGCGYDLAIDLRLKYCKGGSKDSRLLDIKEGDDNCEIVLPGGISIPNVS 66

Query: 576 ISIK 587
            SIK
Sbjct: 67  KSIK 70


>tr|Q3E9W8|Q3E9W8_ARATH Uncharacterized protein At4g24290.1
           OS=Arabidopsis thaliana GN=At4g24290 PE=4 SV=1
          Length = 350

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = +3

Query: 405 AFSVAQQAVEALGRGYDVTCDLWLSYCKSG---ERLIANDNSSSTQDLHLPGNILIPNVS 575
           A   A+ A+ ++G GYD+  DL L YCK G    RL+         ++ LPG I IPNVS
Sbjct: 7   ASKAAEVAIGSIGCGYDLAIDLRLKYCKGGSKDSRLLDIKEGDDNCEIVLPGGISIPNVS 66

Query: 576 ISIK 587
            SIK
Sbjct: 67  KSIK 70


>tr|B3DN86|B3DN86_ARATH At4g24290 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 350

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = +3

Query: 405 AFSVAQQAVEALGRGYDVTCDLWLSYCKSG---ERLIANDNSSSTQDLHLPGNILIPNVS 575
           A   A+ A+ ++G GYD+  DL L YCK G    RL+         ++ LPG I IPNVS
Sbjct: 7   ASKAAEVAIGSIGCGYDLAIDLRLKYCKGGSKDSRLLDIKEGDDNCEIVLPGGISIPNVS 66

Query: 576 ISIK 587
            SIK
Sbjct: 67  KSIK 70