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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915004
Clone id YMU001_000065_D05
Library
Length 572
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000065_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GACGAGTGTCGAGGCTCCTGCGAAAGGCATTTAACTGCACGTATTGCGCGCACTCATTGT
CGTGCTCATCATCAGAACTTGGACTTCCACCATAGCTGTAAGCTTCTCTTTCTTTTCTCT
CTAGCGCCATCACATCAGCAGAAACAGACTAGCGCCGATGATGAGGAAGCTCGTCAGTCT
TCGCCTTCTTCTGGGTCTCCTCTTTCTGTGTTGCTGCCTCTTTGACATAGGCGATTGCAT
GAAGCGGGAAGCCCGGCGCATGCTTGAGCCTTCCGATTGCCTCTGTGGAGAAATCTACAC
CGTTGCAGAGGGCGACACCCTGCAGAGCATCAGCGGCGACTGCAATGCTCCCTTCGTCCT
GATTGACAACCCACAAATCGAAGATGCCGATGATGTGTGGCCGGGCCTCATTCTCAAGCT
CAAATGTGCCCACTTCTAGTATTTGTCCCTCTTTGTGCACTCGCTTGGGATGGTAATATA
CACTCACATATCCATGTACGGAATCAGAGTCTAATTACTTTGCTGATTAATTAGCCTCTT
AATTAATGCAACGTGCTCAGCTCAACCACCCT
■■Homology search results ■■ -
sp_hit_id O94985
Definition sp|O94985|CSTN1_HUMAN Calsyntenin-1 OS=Homo sapiens
Align length 37
Score (bit) 31.6
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915004|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_D05.
         (572 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O94985|CSTN1_HUMAN Calsyntenin-1 OS=Homo sapiens GN=CLSTN1 PE...    32   2.9  
sp|P0ADE6|YGAU_ECOLI Uncharacterized protein ygaU OS=Escherichia...    31   5.0  
sp|P0ADE7|YGAU_ECOL6 Uncharacterized protein ygaU OS=Escherichia...    31   5.0  
sp|P70424|ERBB2_MOUSE Receptor tyrosine-protein kinase erbB-2 OS...    30   8.5  

>sp|O94985|CSTN1_HUMAN Calsyntenin-1 OS=Homo sapiens GN=CLSTN1 PE=1
           SV=1
          Length = 981

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 49  RTHCRAHHQNLDFHHSCKLLFLFSLAPSHQQKQTSAD 159
           +T    HH +L + H C+L+FLF   PS ++K   A+
Sbjct: 410 KTDMNRHHYSL-YVHGCRLIFLFRQDPSEEKKYRPAE 445


>sp|P0ADE6|YGAU_ECOLI Uncharacterized protein ygaU OS=Escherichia
           coli (strain K12) GN=ygaU PE=1 SV=2
          Length = 149

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = +2

Query: 290 EIYTVAEGDTLQSIS----GDCNAPFVLID--NPQIEDADDVWPGLILKL 421
           + YTV  GDTL +IS    G+ N    + +   P ++  D ++PG +L++
Sbjct: 97  QFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRI 146


>sp|P0ADE7|YGAU_ECOL6 Uncharacterized protein ygaU OS=Escherichia
           coli O6 GN=ygaU PE=3 SV=2
          Length = 149

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = +2

Query: 290 EIYTVAEGDTLQSIS----GDCNAPFVLID--NPQIEDADDVWPGLILKL 421
           + YTV  GDTL +IS    G+ N    + +   P ++  D ++PG +L++
Sbjct: 97  QFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRI 146


>sp|P70424|ERBB2_MOUSE Receptor tyrosine-protein kinase erbB-2
           OS=Mus musculus GN=Erbb2 PE=1 SV=3
          Length = 1256

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 290 LHRGNRKAQACAGLPASCNRLCQRG 216
           LH GNR  +AC      CN LC RG
Sbjct: 495 LHSGNRPEEACGLEGLVCNSLCARG 519
tr_hit_id B8LMD4
Definition tr|B8LMD4|B8LMD4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 46
Score (bit) 67.4
E-value 5.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915004|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_D05.
         (572 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LMD4|B8LMD4_PICSI Putative uncharacterized protein OS=Picea...    67   5e-10
tr|A9NJY2|A9NJY2_PICSI Putative uncharacterized protein OS=Picea...    66   1e-09
tr|Q8H053|Q8H053_ORYSJ Putative dihydrodipicolinate reductase-li...    63   1e-08
tr|B8ALW0|B8ALW0_ORYSI Putative uncharacterized protein OS=Oryza...    63   1e-08
tr|Q6NLQ4|Q6NLQ4_ARATH At4g25433 (Putative uncharacterized prote...    62   2e-08
tr|Q8H095|Q8H095_ORYSJ Os10g0524300 protein OS=Oryza sativa subs...    60   7e-08
tr|A3C6M3|A3C6M3_ORYSJ Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|A2Z9I0|A2Z9I0_ORYSI Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|B6TQ19|B6TQ19_MAIZE LysM domain containing protein OS=Zea may...    60   1e-07
tr|A7R1T1|A7R1T1_VITVI Chromosome undetermined scaffold_376, who...    60   1e-07
tr|A7PPH4|A7PPH4_VITVI Chromosome chr8 scaffold_23, whole genome...    60   1e-07
tr|A5AZB4|A5AZB4_VITVI Putative uncharacterized protein OS=Vitis...    60   1e-07
tr|Q9FIS3|Q9FIS3_ARATH Arabidopsis thaliana genomic DNA, chromos...    59   1e-07
tr|Q7XTZ2|Q7XTZ2_ORYSJ OSJNBa0019K04.5 protein (Putative unchara...    59   2e-07
tr|Q01JW9|Q01JW9_ORYSA OSIGBa0147H17.4 protein OS=Oryza sativa G...    59   2e-07
tr|Q9LXI6|Q9LXI6_ARATH Putative uncharacterized protein F3C22_19...    57   7e-07
tr|A9S7Z3|A9S7Z3_PHYPA Predicted protein (Fragment) OS=Physcomit...    54   5e-06
tr|Q2RJ04|Q2RJ04_MOOTA Peptidoglycan-binding LysM OS=Moorella th...    38   0.35 
tr|B3PGY8|B3PGY8_CELJU LysM domain protein OS=Cellvibrio japonic...    36   1.7  
tr|B3NVA8|B3NVA8_DROER GG18881 OS=Drosophila erecta GN=GG18881 P...    36   1.7  
tr|B4Q2P0|B4Q2P0_DROYA GE16132 OS=Drosophila yakuba GN=GE16132 P...    35   3.9  
tr|Q0CFT9|Q0CFT9_ASPTN Putative uncharacterized protein OS=Asper...    35   3.9  
tr|Q6FDT6|Q6FDT6_ACIAD Putative uncharacterized protein OS=Acine...    34   5.0  
tr|A3TVW4|A3TVW4_9RHOB Gamma-D-glutamyl-L-diamino acid endopepti...    34   5.0  
tr|A5AZ86|A5AZ86_VITVI Putative uncharacterized protein OS=Vitis...    34   6.6  
tr|B7DNY4|B7DNY4_9BACL Peptidoglycan-binding LysM OS=Alicyclobac...    33   8.6  
tr|A7QMV8|A7QMV8_VITVI Chromosome chr14 scaffold_128, whole geno...    33   8.6  
tr|A5ARC1|A5ARC1_VITVI Putative uncharacterized protein OS=Vitis...    33   8.6  
tr|A3ASS3|A3ASS3_ORYSJ Putative uncharacterized protein OS=Oryza...    33   8.6  

>tr|B8LMD4|B8LMD4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 97

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 29/46 (63%), Positives = 36/46 (78%)
 Frame = +2

Query: 284 CGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           C EIY V EG+TLQ+IS  CNAPF+L DNP I+D DD++ GL LK+
Sbjct: 46  CEEIYIVGEGETLQTISEKCNAPFILFDNPHIQDTDDIYEGLPLKI 91


>tr|A9NJY2|A9NJY2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 89

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 28/46 (60%), Positives = 36/46 (78%)
 Frame = +2

Query: 284 CGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           C EIY V EG+TLQ+IS  CNAPF+L DNP I+D DD++ G+ LK+
Sbjct: 40  CEEIYIVGEGETLQTISEKCNAPFILFDNPHIQDTDDIYEGVPLKI 85


>tr|Q8H053|Q8H053_ORYSJ Putative dihydrodipicolinate reductase-like
           protein (Putative uncharacterized protein) OS=Oryza
           sativa subsp. japonica GN=OJ1263H11.2 PE=4 SV=1
          Length = 463

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 26/46 (56%), Positives = 34/46 (73%)
 Frame = +2

Query: 284 CGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           C EIY VAEG+TL SIS  C  P++L  NP + D DDV+PGL++K+
Sbjct: 71  CEEIYVVAEGETLHSISDKCGDPYILEQNPHVHDPDDVFPGLVIKI 116


>tr|B8ALW0|B8ALW0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09751 PE=4 SV=1
          Length = 122

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 26/46 (56%), Positives = 34/46 (73%)
 Frame = +2

Query: 284 CGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           C EIY VAEG+TL SIS  C  P++L  NP + D DDV+PGL++K+
Sbjct: 71  CEEIYVVAEGETLHSISDKCGDPYILEQNPHVHDPDDVFPGLVIKI 116


>tr|Q6NLQ4|Q6NLQ4_ARATH At4g25433 (Putative uncharacterized protein)
           OS=Arabidopsis thaliana GN=At4g25433 PE=4 SV=1
          Length = 110

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 30/63 (47%), Positives = 40/63 (63%)
 Frame = +2

Query: 233 DCMKREARRMLEPSDCLCGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLI 412
           +C     ++M+E     C E+Y V EGDTL SIS  C  PF++  NP I D DDV+PGL+
Sbjct: 45  NCEVWRGKQMMERP---CEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLL 101

Query: 413 LKL 421
           +KL
Sbjct: 102 IKL 104


>tr|Q8H095|Q8H095_ORYSJ Os10g0524300 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0524300 PE=4 SV=2
          Length = 108

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = +2

Query: 284 CGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           C EIY V EG+TL SIS  C  P++L  NP + D DDV+PGL++K+
Sbjct: 55  CEEIYVVEEGETLHSISDRCGDPYILEQNPHVHDPDDVFPGLVIKI 100


>tr|A3C6M3|A3C6M3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_030945 PE=4 SV=1
          Length = 106

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = +2

Query: 284 CGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           C EIY V EG+TL SIS  C  P++L  NP + D DDV+PGL++K+
Sbjct: 53  CEEIYVVEEGETLHSISDRCGDPYILEQNPHVHDPDDVFPGLVIKI 98


>tr|A2Z9I0|A2Z9I0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_34380 PE=4 SV=1
          Length = 106

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = +2

Query: 284 CGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           C EIY V EG+TL SIS  C  P++L  NP + D DDV+PGL++K+
Sbjct: 53  CEEIYVVEEGETLHSISDRCGDPYILEQNPHVHDPDDVFPGLVIKI 98


>tr|B6TQ19|B6TQ19_MAIZE LysM domain containing protein OS=Zea mays
           PE=4 SV=1
          Length = 113

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = +2

Query: 284 CGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           C EIY VAEG+TL SIS  C  P +L  NP + D DDV+PGL++++
Sbjct: 62  CEEIYVVAEGETLHSISDKCGDPLILERNPHVHDXDDVFPGLVIRI 107


>tr|A7R1T1|A7R1T1_VITVI Chromosome undetermined scaffold_376, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012396001 PE=4 SV=1
          Length = 120

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 24/46 (52%), Positives = 33/46 (71%)
 Frame = +2

Query: 284 CGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           C EIY V EG+TL +IS  C  P+++  NP I D DDV+PGL++K+
Sbjct: 58  CDEIYVVGEGETLHTISDKCGDPYIVEQNPHIHDPDDVFPGLVIKI 103