NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915011
Clone id YMU001_000065_E01
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000065_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGGAGCTGCAGGCCAACAAGAAGGATCTGGTTTTCTGTTGCCCCTTTGACTCTCTCAAGA
CTCATGTATCTCTCTTTGATCTTTTTCATGCGAATTTGTGGAGACACCCTTATCTTGCTT
GGCTCTTGGAAACTACCCTCTACAGGTAGCACATCCCTTTAGATGGCTTTAGCATTCCCT
TATAATCTTGATCGACCGCCCTTGGCCAACCTCCCTGTATCGCCTCCTCTCTGGACTGTG
AGCTCTCCACAATTGGCGGCCCTGCCCTCCTGTTCACGCCCGAGCTATCCCCTCCTCCTC
TCGGTTGCTACCAACTAACACCTTCTATCACTTGAAGCGATTGCAGATTCCCTTCCTCTA
TTCAGGCTGCTCACAGCCTTCCATTCTGGAAATAATCACGAGACCTTATTTCCCTGTTTG
CCATCCACAATAGCCCCCTGCAGGGCTCTCTGCTCCTCTCGGGCTCATGGCCTCCTGCTT
CTCTGCTTGCAGCTCGTTACTTAATTAACATACAAATGGTGGAGGTCGAGGACCTATG
■■Homology search results ■■ -
sp_hit_id Q96QH2
Definition sp|Q96QH2|PRAM_HUMAN PML-RARA-regulated adapter molecule 1 OS=Homo sapiens
Align length 45
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915011|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_E01.
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96QH2|PRAM_HUMAN PML-RARA-regulated adapter molecule 1 OS=Ho...    32   2.6  
sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapien...    31   4.3  
sp|Q3T8J9|GON4L_HUMAN GON-4-like protein OS=Homo sapiens GN=GON4...    30   5.7  
sp|Q6PIX9|CQ080_MOUSE Uncharacterized protein C17orf80 homolog O...    30   5.7  
sp|Q55470|Y514_SYNY3 Uncharacterized protein sll0514 OS=Synechoc...    30   9.8  
sp|P04168|HIP1_HALHA High-potential iron-sulfur protein isozyme ...    30   9.8  

>sp|Q96QH2|PRAM_HUMAN PML-RARA-regulated adapter molecule 1 OS=Homo
           sapiens GN=PRAM1 PE=1 SV=1
          Length = 718

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
 Frame = +1

Query: 172 AFPYNLDRPPLANLPVSPP-------LWTVSSPQLAALPSCSRPS 285
           AFP    +PPL++ P  PP         T S P+++ LP   RP+
Sbjct: 316 AFPKKASQPPLSDFPKKPPQPELGDLTRTSSEPEVSVLPKRPRPA 360


>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens
           GN=DIDO1 PE=1 SV=5
          Length = 2240

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 140 EGSFQEPSKIRVSPQIRMKKIKERYMSLERVKGATEN 30
           EGS +  S+ R  PQ     +KER  S E+VKG  ++
Sbjct: 112 EGSVESASETRSGPQSASTAVKERPASSEKVKGGDDH 148


>sp|Q3T8J9|GON4L_HUMAN GON-4-like protein OS=Homo sapiens GN=GON4L
            PE=1 SV=1
          Length = 2241

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 318  LVGSN--REEEGIARA*TGGQGRQLWRAHSPERRRYREVGQGRSIKIIRE 175
            LVGS+  RE   +  A   GQG+ +    +PE R   E  Q R+++  R+
Sbjct: 1892 LVGSSPHREASPMPGAKEAGQGKDMMEEEAPEERESTEATQSRTVRTTRK 1941


>sp|Q6PIX9|CQ080_MOUSE Uncharacterized protein C17orf80 homolog
           OS=Mus musculus GN=D11Wsu47e PE=2 SV=3
          Length = 558

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +1

Query: 202 LANLPVSPPLWTVSS--PQLAALPSCSRPSYPLL-LSVATN*HLLSLEAIADSLPLFRLL 372
           L  LP  PP W++++  P L  L   S    P    S A +  L  L     SLPL RLL
Sbjct: 451 LGVLPRRPPPWSLAAQVPPLPTLQGRSVSKVPWWGRSSADSRSLEPLTLTTSSLPLMRLL 510

Query: 373 TAFHSG 390
            A H G
Sbjct: 511 GAVHKG 516


>sp|Q55470|Y514_SYNY3 Uncharacterized protein sll0514
           OS=Synechocystis sp. (strain PCC 6803) GN=sll0514 PE=4
           SV=1
          Length = 554

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +1

Query: 223 PPLWTVSSPQLAALPSC 273
           P LWTV  PQL  LPSC
Sbjct: 327 PGLWTVFMPQLLTLPSC 343


>sp|P04168|HIP1_HALHA High-potential iron-sulfur protein isozyme I
           OS=Halorhodospira halophila GN=hip1 PE=1 SV=2
          Length = 71

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 289 DSSGVNRRAGPPIVESSQSREEAIQGGWPRAVDQDYKGMLKPSKGMC 149
           D+SG  R     + E+     EA+Q GW R    D+  +L  ++G C
Sbjct: 18  DASGHPRYQEGQLCENCAFWGEAVQDGWGRCTHPDFDEVLVKAEGWC 64
tr_hit_id A9FXY3
Definition tr|A9FXY3|A9FXY3_9RHOB Universal stress protein family protein OS=Phaeobacter gallaeciensis BS107
Align length 68
Score (bit) 37.0
E-value 0.66
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915011|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_E01.
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9FXY3|A9FXY3_9RHOB Universal stress protein family protein O...    37   0.66 
tr|A1CIX5|A1CIX5_ASPCL Putative uncharacterized protein OS=Asper...    35   2.5  
tr|Q2BMJ2|Q2BMJ2_9GAMM Ferric siderophore transporter, periplasm...    35   3.3  
tr|Q821F0|Q821F0_CHLCV Putative uncharacterized protein OS=Chlam...    34   4.3  
tr|Q00Y71|Q00Y71_OSTTA [S] KOG2300 Uncharacterized conserved pro...    34   4.3  
tr|Q2KT32|Q2KT32_ELECQ Homeobox protein DLX3 (Fragment) OS=Eleut...    34   5.6  
tr|Q5BAD2|Q5BAD2_EMENI Putative uncharacterized protein OS=Emeri...    33   7.3  
tr|Q1JT86|Q1JT86_TOXGO Zinc finger, putative OS=Toxoplasma gondi...    33   9.5  

>tr|A9FXY3|A9FXY3_9RHOB Universal stress protein family protein
           OS=Phaeobacter gallaeciensis BS107 GN=RGBS107_03763 PE=4
           SV=1
          Length = 279

 Score = 37.0 bits (84), Expect = 0.66
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = +1

Query: 163 MALAFPYNLDRPPLANLPVSPPLWTVSSPQLAALPSCSRPSYPLLLSVATN*HLLSLEAI 342
           + L  PY  DRP  A   V   L+   +P L     C  P  P  + VA N  + ++ AI
Sbjct: 113 VVLGQPYGKDRPAEAEAIVEAALFEGRAPVLVVPDDCPLPDQPKTVLVAWNESIEAMTAI 172

Query: 343 ADSLPLFR 366
             +LP+ R
Sbjct: 173 RKALPILR 180


>tr|A1CIX5|A1CIX5_ASPCL Putative uncharacterized protein
           OS=Aspergillus clavatus GN=ACLA_053040 PE=4 SV=1
          Length = 222

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
 Frame = +3

Query: 54  LKTHVSLFDLFHANLWRHPYLAWLLETTLYR*HIPLDGFSIPL*S*STALGQPPCIASSL 233
           L  H ++FD   A    HP+L+  L+ +L    +     S+P+   +T+    PC++  +
Sbjct: 86  LSMHNAVFDSGVA--LSHPFLSQSLQKSLSL--LLSLTQSVPI---TTSFNSSPCVSCEI 138

Query: 234 DCELSTIGGPALLFTPELSPPPLGCYQLTPSIT*SD---CRFPSSIQAAHSLP 383
           D +     G  L FTP+L  PPL   Q  P  + +D    +F S + +A + P
Sbjct: 139 DGQWDE--GGVLEFTPQLPTPPLSTQQTPPQSSLADGTLSQFDSLLHSAATSP 189


>tr|Q2BMJ2|Q2BMJ2_9GAMM Ferric siderophore transporter, periplasmic
           energy transduction protein TonB OS=Neptuniibacter
           caesariensis GN=MED92_04382 PE=4 SV=1
          Length = 259

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +1

Query: 13  PTRRIWFSVAPLTLSRLMYLSLIFFMRICGDTLILLGSWKLPSTGSTSL*MALAFPYNLD 192
           PT+ IW  VA   +S +++   ++++       ++ G   LP  GS  L M  A P  + 
Sbjct: 9   PTKLIW--VAGGAISLMLHAGGVWYLNQNNPPNLISGH--LPQAGSIKLVMHAAEPKAVS 64

Query: 193 RPPLANLPVSPP 228
            PP+  +P+ PP
Sbjct: 65  APPILPIPIKPP 76


>tr|Q821F0|Q821F0_CHLCV Putative uncharacterized protein
           OS=Chlamydophila caviae GN=CCA_00991 PE=4 SV=1
          Length = 466

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
 Frame = +1

Query: 4   SCRPTRRIWFSVAPLTLSRLMYLSLIFFMRICGDTLILLGSWKLPSTGSTSL*MALAFPY 183
           +C+ +++ W   +  T+ +L  LS +         L+ LGS    +    S+   +   +
Sbjct: 286 NCKESQKHWLKRSAFTIGKLALLSTV---------LVGLGS----TLKLASISHHVREHF 332

Query: 184 NLDRPPLANLPVSPPLWTVSSPQLAALPSCSRPSYPLLLSVATN*H-LLSLEAIADSLPL 360
           +L  P    +P S  L  V     AA+   +RP YP L ++ TN   +L L ++A S P 
Sbjct: 333 SLVCPETQKVPRS--LRGVEEALRAAIAEKTRPEYPYLPTIPTNKETMLFLSSVAQSTPS 390

Query: 361 FRL------LTAFHSGNN 396
            +L      LT+F S  N
Sbjct: 391 VKLSYFCYSLTSFPSQQN 408


>tr|Q00Y71|Q00Y71_OSTTA [S] KOG2300 Uncharacterized conserved
           protein OS=Ostreococcus tauri GN=Ot12g00890 PE=4 SV=1
          Length = 687

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 27/82 (32%), Positives = 36/82 (43%)
 Frame = +1

Query: 214 PVSPPLWTVSSPQLAALPSCSRPSYPLLLSVATN*HLLSLEAIADSLPLFRLLTAFHSGN 393
           P  PP     +PQ       SR   P L+++A     L LE   D L L ++L    +  
Sbjct: 18  PAVPPSTRTETPQ-------SRSLAPALIALA-----LELERADDHLALIKVLETLIANA 65

Query: 394 NHETLFPCLPSTIAPCRALCSS 459
           N +T   CLPST A  R   +S
Sbjct: 66  NAKTRAKCLPSTEARARIKLAS 87


>tr|Q2KT32|Q2KT32_ELECQ Homeobox protein DLX3 (Fragment)
           OS=Eleutherodactylus coqui PE=2 SV=1
          Length = 217

 Score = 33.9 bits (76), Expect = 5.6
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +1

Query: 208 NLPVSPPLWTVS---SPQLAALPSCSRPSY 288
           N P SPP+W  S   +PQ  +LP CS PSY
Sbjct: 187 NSPSSPPMWEHSRSRTPQPQSLPHCSSPSY 216


>tr|Q5BAD2|Q5BAD2_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN2498.2 PE=4 SV=1
          Length = 563

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +1

Query: 208 NLPVSPPLWTVSSPQLAALPSCSRPSYPLLLS 303
           N+PVSPPL T +S  +A   SCS+  YP  +S
Sbjct: 194 NMPVSPPL-TEASNDIAVTSSCSQSGYPAFMS 224


>tr|Q1JT86|Q1JT86_TOXGO Zinc finger, putative OS=Toxoplasma gondii
           RH GN=TgIa.1360 PE=4 SV=1
          Length = 768

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 245 LHNWRPCPPVHARAIPSSSRLL--PTNTFYHLKRLQIPFLYSGCSQPSILEIITRPYFPV 418
           LH++RP  P    A P SS LL  P+ +   L  L+  F YS  S P+     T P   +
Sbjct: 623 LHDYRPASP-SPSAAPLSSSLLASPSRSRQSLLTLRASFPYSASSPPAWSRHHTAPLHSL 681

Query: 419 CHPQ*P 436
            HP  P
Sbjct: 682 LHPTAP 687