BP915016 |
Clone id |
YMU001_000065_E06 |
Library |
YMU01 |
Length |
588 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000065_E06. |
Accession |
BP915016 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CTCAACGCTCTCATCTGGAGGTCTCCCTTCTGAAATGGGTGAAGGATGTTCAGAAACTTC ATGCTCGGCGTCATGTTCCGTATCATTCGCGACTGCAGAAACTTTTGGTATCCGGATGCA TACAGAACAATTGTGACCATCTGGTTTGGAGGAATCATCGTGAACATCTTTACCAGACGA CCTTTGATTTTCAGCGCATTTAGGACAGTACCAGGATTCATCTGGCACACTGCCAATTGC AGGGATAATGCAGTTCATATGATAAGCAGCTTCACACCCATCACATCGAAGAACGTTATC ATCCTCTGTCTTACAGGCTTCACAAACTCCACTTTTGCCGGCGCTCTTGTGGAGCTGCTT GGTCGTTTCATCACTTGCAGCTAGTTTCTTGCTCTTATTCTCGTTTTTTGTACATGAGGG GCAACACCATTCACCTTCTTGCAGTTTATTCGACGGAATTCCCGTGCAATCCATGTGAAA CGCTGCCTGACAGAGCCTGCACATGATGTAGTCCATGCCTTGCTCAAGCCCACAGCTCTT GCACACCCCTGATACCTTGTCTGTAACCTTCATTTTAAATACCAAAGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6PDQ2 |
Definition |
sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus |
Align length |
124 |
Score (bit) |
79.0 |
E-value |
2.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915016|Adiantum capillus-veneris mRNA, clone: YMU001_000065_E06. (588 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4... 79 2e-14 sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4... 79 2e-14 sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3... 79 2e-14 sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5... 78 4e-14 sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein M... 77 5e-14 sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3... 75 2e-13 sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=... 63 1e-09 sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=... 62 2e-09 sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing prot... 62 2e-09 sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protei... 61 5e-09 sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing prot... 61 5e-09 sp|Q9HDV4|LID2_SCHPO Lid2 complex component lid2 OS=Schizosaccha... 58 3e-08 sp|Q5XUN4|JAD1D_PANTR Histone demethylase JARID1D OS=Pan troglod... 58 3e-08 sp|Q9BY66|JAD1D_HUMAN Histone demethylase JARID1D OS=Homo sapien... 58 3e-08 sp|Q9UIG0|BAZ1B_HUMAN Bromodomain adjacent to zinc finger domain... 58 3e-08 sp|O88379|BAZ1A_MOUSE Bromodomain adjacent to zinc finger domain... 58 3e-08 sp|Q8UVR5|BAZ1A_XENLA Bromodomain adjacent to zinc finger domain... 58 4e-08 sp|Q9NRL2|BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain... 57 9e-08 sp|Q30DN6|JAD1D_CANFA Histone demethylase JARID1D OS=Canis famil... 56 1e-07 sp|A1YVX4|JAD1C_PIG Histone demethylase JARID1C OS=Sus scrofa GN... 56 2e-07 sp|P41230|JAD1C_MOUSE Histone demethylase JARID1C OS=Mus musculu... 56 2e-07 sp|P41229|JAD1C_HUMAN Histone demethylase JARID1C OS=Homo sapien... 56 2e-07 sp|Q38JA7|JAD1C_CANFA Histone demethylase JARID1C OS=Canis famil... 56 2e-07 sp|Q9Z277|BAZ1B_MOUSE Bromodomain adjacent to zinc finger domain... 56 2e-07 sp|Q9UGL1|JAD1B_HUMAN Histone demethylase JARID1B OS=Homo sapien... 55 3e-07 sp|Q5F3R2|JAD1B_CHICK Histone demethylase JARID1B OS=Gallus gall... 55 3e-07 sp|Q80Y84|JAD1B_MOUSE Histone demethylase JARID1B OS=Mus musculu... 54 4e-07 sp|P29375|JAD1A_HUMAN Histone demethylase JARID1A OS=Homo sapien... 54 6e-07 sp|Q9VMJ7|JAD1_DROME Histone demethylase lid OS=Drosophila melan... 54 8e-07 sp|Q6IQX0|JA1BB_DANRE Histone demethylase JARID1B-B OS=Danio rer... 54 8e-07
>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1 Length = 1915
Score = 79.0 bits (193), Expect = 2e-14 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 8/124 (6%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAASDET 364 C+ C +QG + I+C C A+HM C K EG+W CP C K + + + E Sbjct: 366 CEVC--QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKEDNSEG 423
Query: 363 TKQLHKSAG--------KSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWY 208 + L + G C CK + +L CD C ++YH++C+ P + +P+ W Sbjct: 424 EEILEEVGGDPEEEDDHHMEFCRVCK-DGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWL 482
Query: 207 CPKC 196 CP+C Sbjct: 483 CPRC 486
Score = 42.7 bits (99), Expect = 0.001 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSK 388 C+ C + G + + C C +++H+ C P ++ GEW CP CT K K Sbjct: 445 CRVC--KDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 494
>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1 Length = 1912
Score = 79.0 bits (193), Expect = 2e-14 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 8/124 (6%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAASDET 364 C+ C +QG + I+C C A+HM C K EG+W CP C K + + + E Sbjct: 373 CEVC--QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKEDNSEG 430
Query: 363 TKQLHKSAG--------KSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWY 208 + L + G C CK + +L CD C ++YH++C+ P + +P+ W Sbjct: 431 EEILEEVGGDLEEEDDHHMEFCRVCK-DGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWL 489
Query: 207 CPKC 196 CP+C Sbjct: 490 CPRC 493
Score = 42.7 bits (99), Expect = 0.001 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSK 388 C+ C + G + + C C +++H+ C P ++ GEW CP CT K K Sbjct: 452 CRVC--KDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 501
>sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3 Length = 2000
Score = 78.6 bits (192), Expect = 2e-14 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 6/122 (4%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKN----ENKSKKLAA 376 C+ C +QG + I+C C A+H+ C ++ EG+W CP C K E K ++ Sbjct: 382 CEVC--QQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEY 439
Query: 375 SDETTKQLHKSAGKSGV--CEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWYCP 202 +E ++ K + C CK + +L CD C ++YH++C+ P + +P+ W CP Sbjct: 440 EEEGEEEGEKEEEDDHMEYCRVCK-DGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCP 498
Query: 201 KC 196 +C Sbjct: 499 RC 500
Score = 40.8 bits (94), Expect = 0.005 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCT 409 C+ C + G + + C C +++H+ C P + GEW CP CT Sbjct: 459 CRVC--KDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCT 501
>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=2 SV=1 Length = 1954
Score = 77.8 bits (190), Expect = 4e-14 Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAASDET 364 C+ C +QG + I+C C A+H+ C K EG+W CP C K + + DE Sbjct: 346 CEVC--QQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDDDEE 403
Query: 363 TKQ--LHKSAGKSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWYCPKC 196 + + C CK + +L CD C ++YH++C+ P + +P+ W CP+C Sbjct: 404 EEGGCEEEEDDHMEFCRVCK-DGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRC 460
Score = 43.1 bits (100), Expect = 0.001 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSK 388 C+ C + G + + C C +++H+ C P ++ GEW CP CT K K Sbjct: 419 CRVC--KDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGK 468
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2 Length = 1982
Score = 77.4 bits (189), Expect = 5e-14 Identities = 37/117 (31%), Positives = 59/117 (50%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAASDET 364 C+ C +QG + I+C C A+H+ C ++ EG+W CP C + A++E Sbjct: 380 CEVC--QQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHCEADGG------AAEEE 431
Query: 363 TKQLHKSAGKSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWYCPKCA 193 H+ C CK + +L CD C +AYH C+ P + ++PD W CP+C+ Sbjct: 432 DDDEHQE-----FCRVCK-DGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCS 482
Score = 50.1 bits (118), Expect = 8e-06 Identities = 29/97 (29%), Positives = 43/97 (44%) Frame = -1
Query: 408 KNENKSKKLAASDETTKQLHKSAGKSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGS 229 K +NK KK E H+ CE C+ + ++ CD C AYH+ C+ P + Sbjct: 355 KKKNKLKKTKNFPEGEDGEHEH---QDYCEVCQ-QGGEIILCDTCPRAYHLVCLEPELDE 410
Query: 228 VPDESWYCPKCAENQRSSGKDVHDDSSKPDGHNCSVC 118 P+ W CP C E + ++ DD + C VC Sbjct: 411 PPEGKWSCPHC-EADGGAAEEEDDDEHQ---EFCRVC 443
>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2 Length = 1787
Score = 75.5 bits (184), Expect = 2e-13 Identities = 37/116 (31%), Positives = 54/116 (46%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAASDET 364 C+ C Q + ++C C A+H+ C + EG+W CP C E+ L +E Sbjct: 268 CEVCN--QDGELMLCDTCTRAYHVACIDENMEQPPEGDWSCPHC--EEHGPDVLIVEEEP 323
Query: 363 TKQLHKSAGKSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWYCPKC 196 K C CK E N+L CD C ++YH CI P + +P+ W CP+C Sbjct: 324 AK------ANMDYCRICK-ETSNILLCDTCPSSYHAYCIDPPLTEIPEGEWSCPRC 372
Score = 49.7 bits (117), Expect = 1e-05 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 8/102 (7%) Frame = -1
Query: 399 NKSKKLAASDETTKQLHKSAG-----KSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAI 235 +K K S +K+ K G CE C +D ++ CD C AYH+ CI + Sbjct: 238 DKRKAALESARASKRARKEQGVVEENHQENCEVCN-QDGELMLCDTCTRAYHVACIDENM 296
Query: 234 GSVPDESWYCPKCAENQRSSGKD---VHDDSSKPDGHNCSVC 118 P+ W CP C E+ G D V ++ +K + C +C Sbjct: 297 EQPPEGDWSCPHCEEH----GPDVLIVEEEPAKANMDYCRIC 334
>sp|Q8NEZ4|MLL3_HUMAN Histone-lysine N-methyltransferase MLL3 OS=Homo sapiens GN=MLL3 PE=1 SV=3 Length = 4911
Score = 62.8 bits (151), Expect = 1e-09 Identities = 42/150 (28%), Positives = 52/150 (34%), Gaps = 2/150 (1%) Frame = -1
Query: 561 DKVSGVCKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKL 382 D VC S G +D C C +H C I L+ W CP C Sbjct: 341 DANCAVCDSPG--DLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK--------- 389
Query: 381 AASDETTKQLHKSAGKSGVCEACKT--EDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWY 208 VC+ CK ED +L CD C+ YH C+ P + SVP W Sbjct: 390 ------------------VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWK 431
Query: 207 CPKCAENQRSSGKDVHDDSSKPDGHNCSVC 118 C C + SS HNC +C Sbjct: 432 CKNCRICIECGTR-----SSSQWHHNCLIC 456
Score = 52.8 bits (125), Expect = 1e-06 Identities = 36/131 (27%), Positives = 48/131 (36%), Gaps = 4/131 (3%) Frame = -1
Query: 576 KMKVTDKVSGVCKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNK--LQEGEWCCPSCTKN 403 K + + VC S G + C C +H C I K L +G W C CT Sbjct: 952 KFTLNQDMCVVCGSFGQGAEGRLLACSQCGQCYHPYCVSIKITKVVLSKG-WRCLECT-- 1008
Query: 402 ENKSKKLAASDETTKQLHKSAGKSGVCEAC--KTEDDNVLRCDGCEAAYHMNCIIPAIGS 229 VCEAC T+ +L CD C+ +YH C+ P + + Sbjct: 1009 -------------------------VCEACGKATDPGRLLLCDDCDISYHTYCLDPPLQT 1043
Query: 228 VPDESWYCPKC 196 VP W C C Sbjct: 1044 VPKGGWKCKWC 1054
Score = 36.2 bits (82), Expect = 0.13 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 11/128 (8%) Frame = -1
Query: 546 VCKSCGLEQGMD-YIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAA-- 376 VC++CG ++C C ++H C P + +G W C C + A Sbjct: 1009 VCEACGKATDPGRLLLCDDCDISYHTYCLDPPLQTVPKGGWKCKWCVWCRHCGATSAGLR 1068
Query: 375 ----SDETTKQLHKSAGKSGVCEACKTEDDNVLRCDGCEAAYHMNC----IIPAIGSVPD 220 ++ T S VC E+D +L+C C+ H C + +V D Sbjct: 1069 CEWQNNYTQCAPCASLSSCPVCYRNYREEDLILQCRQCDRWMHAVCQNLNTEEEVENVAD 1128
Query: 219 ESWYCPKC 196 + C C Sbjct: 1129 IGFDCSMC 1136
>sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=Mus musculus GN=Mll3 PE=2 SV=2 Length = 4903
Score = 62.4 bits (150), Expect = 2e-09 Identities = 42/150 (28%), Positives = 52/150 (34%), Gaps = 2/150 (1%) Frame = -1
Query: 561 DKVSGVCKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKL 382 D VC S G +D C C +H C I L+ W CP C Sbjct: 340 DANCAVCDSPG--DLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK--------- 388
Query: 381 AASDETTKQLHKSAGKSGVCEACKT--EDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWY 208 VC+ CK ED +L CD C+ YH C+ P + SVP W Sbjct: 389 ------------------VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWK 430
Query: 207 CPKCAENQRSSGKDVHDDSSKPDGHNCSVC 118 C C + SS HNC +C Sbjct: 431 CKNCRICIECGTR-----SSTQWHHNCLIC 455
Score = 52.4 bits (124), Expect = 2e-06 Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 4/121 (3%) Frame = -1
Query: 546 VCKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNK--LQEGEWCCPSCTKNENKSKKLAAS 373 VC S G + C C +H C I K L +G W C CT Sbjct: 955 VCGSFGQGAEGRLLACSQCGQCYHPYCVSIKITKVVLSKG-WRCLECT------------ 1001
Query: 372 DETTKQLHKSAGKSGVCEAC--KTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWYCPK 199 VCEAC T+ +L CD C+ +YH C+ P + +VP W C Sbjct: 1002 ---------------VCEACGKATDPGRLLLCDDCDISYHTYCLDPPLQTVPKGGWKCKW 1046
Query: 198 C 196 C Sbjct: 1047 C 1047
Score = 35.4 bits (80), Expect = 0.21 Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 11/128 (8%) Frame = -1
Query: 546 VCKSCGLEQGMD-YIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAAS- 373 VC++CG ++C C ++H C P + +G W C C + A Sbjct: 1002 VCEACGKATDPGRLLLCDDCDISYHTYCLDPPLQTVPKGGWKCKWCVWCRHCGATSAGLR 1061
Query: 372 ---DETTKQLHKSAGKSGVCEACKT--EDDNVLRCDGCEAAYHMNC----IIPAIGSVPD 220 Q A S C+ E+D +L+C C+ H C + +V D Sbjct: 1062 CEWQNNYTQCAPCASLSSCPVCCRNYREEDLILQCRQCDRWMHAVCQNLNTEEEVENVAD 1121
Query: 219 ESWYCPKC 196 + C C Sbjct: 1122 IGFDCSMC 1129
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens GN=PHRF1 PE=1 SV=2 Length = 1649
Score = 62.0 bits (149), Expect = 2e-09 Identities = 37/127 (29%), Positives = 51/127 (40%), Gaps = 24/127 (18%) Frame = -1
Query: 501 CRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAASDETT------------- 361 C +C AF G P N + C C +K+ D T Sbjct: 108 CPICLNAFRDQAVGTPENC---AHYFCLDCIVEWSKNANSCPVDRTLFKCICIRAQFGGK 164
Query: 360 --KQLHKSAGKSG-------VCEACKTED--DNVLRCDGCEAAYHMNCIIPAIGSVPDES 214 K++ K+ CE C D D +L CDGC+A YHM C+ P + VP + Sbjct: 165 ILKKIPVENTKASEEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDE 224
Query: 213 WYCPKCA 193 W+CP+CA Sbjct: 225 WFCPECA 231
Score = 42.7 bits (99), Expect = 0.001 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 14/85 (16%) Frame = -1
Query: 543 CKSCGLEQGMD-YIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSC-------------TK 406 C+ CG D ++C C A +HM+C P ++ EW CP C Sbjct: 186 CEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGVVLAADAGPVS 245
Query: 405 NENKSKKLAASDETTKQLHKSAGKS 331 E S LA TT +L AG++ Sbjct: 246 EEEVSLLLADVVPTTSRLRPRAGRT 270
>sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1 OS=Rattus norvegicus GN=Phrf1 PE=1 SV=2 Length = 1685
Score = 60.8 bits (146), Expect = 5e-09 Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 2/46 (4%) Frame = -1
Query: 324 CEACKTED--DNVLRCDGCEAAYHMNCIIPAIGSVPDESWYCPKCA 193 CE C D D +L CDGC+A YHM C+ P + VP + W+CP+CA Sbjct: 191 CEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECA 236
Score = 41.6 bits (96), Expect = 0.003 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 14/85 (16%) Frame = -1
Query: 543 CKSCGLEQGMD-YIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSC-------------TK 406 C+ CG D ++C C A +HM+C P ++ EW CP C Sbjct: 191 CEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAVPGVDPTHDAAPVS 250
Query: 405 NENKSKKLAASDETTKQLHKSAGKS 331 +E S LA TT +L G++ Sbjct: 251 DEEVSLLLADVVPTTSRLRPRVGRT 275
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A3KN93 |
Definition |
tr|A3KN93|A3KN93_XENTR Chd4 protein OS=Xenopus tropicalis |
Align length |
123 |
Score (bit) |
82.8 |
E-value |
1.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915016|Adiantum capillus-veneris mRNA, clone: YMU001_000065_E06. (588 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A3KN93|A3KN93_XENTR Chd4 protein OS=Xenopus tropicalis GN=chd... 83 1e-14 tr|Q7ZWN3|Q7ZWN3_XENLA B230399n07 protein OS=Xenopus laevis GN=c... 80 9e-14 tr|B5DQA0|B5DQA0_DROPS GA23929 OS=Drosophila pseudoobscura pseud... 79 1e-13 tr|B4H036|B4H036_DROPE GL22908 OS=Drosophila persimilis GN=GL229... 79 1e-13 tr|B3KY63|B3KY63_HUMAN cDNA FLJ16830 fis, clone UTERU3022536, hi... 79 1e-13 tr|Q1LYP4|Q1LYP4_DANRE Novel protein similar to vertebrate chrom... 79 2e-13 tr|A9JSS2|A9JSS2_DANRE Si:ch211-51m24.3 protein (Fragment) OS=Da... 79 2e-13 tr|A4IG92|A4IG92_DANRE Si:ch211-51m24.3 protein (Fragment) OS=Da... 79 2e-13 tr|Q8BM83|Q8BM83_MOUSE Putative uncharacterized protein (Fragmen... 79 2e-13 tr|Q5DTP7|Q5DTP7_MOUSE MKIAA4075 protein (Fragment) OS=Mus muscu... 79 2e-13 tr|Q4S447|Q4S447_TETNG Chromosome 20 SCAF14744, whole genome sho... 78 3e-13 tr|A8Q9I0|A8Q9I0_BRUMA CHD4 protein, putative OS=Brugia malayi G... 78 3e-13 tr|Q6ZSZ4|Q6ZSZ4_HUMAN cDNA FLJ45103 fis, clone BRAWH3032571, mo... 78 4e-13 tr|A6NMM4|A6NMM4_HUMAN Putative uncharacterized protein CHD5 OS=... 78 4e-13 tr|A2A8L1|A2A8L1_MOUSE Chromodomain helicase DNA binding protein... 77 6e-13 tr|Q59E34|Q59E34_DROME Mi-2, isoform B OS=Drosophila melanogaste... 77 6e-13 tr|B4PFW6|B4PFW6_DROYA GE22457 OS=Drosophila yakuba GN=Dyak\GE22... 77 6e-13 tr|B4ML97|B4ML97_DROWI GK17504 OS=Drosophila willistoni GN=GK175... 77 6e-13 tr|B4LBL9|B4LBL9_DROVI GJ13998 OS=Drosophila virilis GN=GJ13998 ... 77 6e-13 tr|B4L0W7|B4L0W7_DROMO GI13663 OS=Drosophila mojavensis GN=GI136... 77 6e-13 tr|B4IXP0|B4IXP0_DROGR GH16907 OS=Drosophila grimshawi GN=GH1690... 77 6e-13 tr|B4IIS0|B4IIS0_DROSE GM15785 OS=Drosophila sechellia GN=GM1578... 77 6e-13 tr|B3NE02|B3NE02_DROER GG13363 OS=Drosophila erecta GN=GG13363 P... 77 6e-13 tr|B3M8T6|B3M8T6_DROAN GF10842 OS=Drosophila ananassae GN=GF1084... 77 6e-13 tr|Q4T5L7|Q4T5L7_TETNG Chromosome undetermined SCAF9199, whole g... 77 7e-13 tr|Q8BR71|Q8BR71_MOUSE Putative uncharacterized protein (Fragmen... 77 7e-13 tr|B1AR17|B1AR17_MOUSE Chromodomain helicase DNA binding protein... 77 7e-13 tr|B1AR16|B1AR16_MOUSE Chromodomain helicase DNA binding protein... 77 7e-13 tr|A9JRU7|A9JRU7_DANRE Wu:fd12d03 protein (Fragment) OS=Danio re... 77 9e-13 tr|Q2KML1|Q2KML1_RAT Chromodomain helicase DNA-binding protein 3... 77 9e-13
>tr|A3KN93|A3KN93_XENTR Chd4 protein OS=Xenopus tropicalis GN=chd5 PE=2 SV=1 Length = 1888
Score = 82.8 bits (203), Expect = 1e-14 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 7/123 (5%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKN-------ENKSKK 385 C+ C +QG + I+C C A+HM C +K EG+W CP C K E+ S+ Sbjct: 363 CEVC--QQGGEIILCDTCPRAYHMVCLDPDMDKAPEGKWSCPHCEKEGVQWEAKEDNSEI 420
Query: 384 LAASDETTKQLHKSAGKSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWYC 205 D+T + C CK + +L CD C ++YH++C+ P + +P+ W C Sbjct: 421 DDDMDDTVGDPEEEDHHMEFCRVCK-DGGELLCCDACPSSYHIHCLNPPLPEIPNGEWLC 479
Query: 204 PKC 196 P+C Sbjct: 480 PRC 482
Score = 42.7 bits (99), Expect = 0.015 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSK 388 C+ C + G + + C C +++H+ C P ++ GEW CP CT K K Sbjct: 441 CRVC--KDGGELLCCDACPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 490
>tr|Q7ZWN3|Q7ZWN3_XENLA B230399n07 protein OS=Xenopus laevis GN=chd5 PE=2 SV=1 Length = 1893
Score = 80.1 bits (196), Expect = 9e-14 Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAASDET 364 C+ C +QG + I+C C A+HM C +K EG+W CP C K + + + E Sbjct: 364 CEVC--QQGGEIILCDTCPRAYHMVCLDPDMDKAPEGKWSCPHCEKEGVQWEAKEDNSEL 421
Query: 363 TKQLHKSAG-------KSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWYC 205 L + G C CK + +L CD C ++YH++C+ P + +P+ W C Sbjct: 422 DDDLDDAVGDPEEEDHHMEFCRVCK-DGGELLCCDVCPSSYHIHCLNPPLPEIPNGEWLC 480
Query: 204 PKC 196 P+C Sbjct: 481 PRC 483
Score = 43.5 bits (101), Expect = 0.009 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSK 388 C+ C + G + + C +C +++H+ C P ++ GEW CP CT K K Sbjct: 442 CRVC--KDGGELLCCDVCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPPLKGK 491
>tr|B5DQA0|B5DQA0_DROPS GA23929 OS=Drosophila pseudoobscura pseudoobscura GN=GA23929 PE=4 SV=1 Length = 2036
Score = 79.3 bits (194), Expect = 1e-13 Identities = 38/117 (32%), Positives = 60/117 (51%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAASDET 364 C+ C +QG + I+C C A+H+ C ++ EG+W CP C + A++E Sbjct: 377 CEVC--QQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHCEADGG------AAEEE 428
Query: 363 TKQLHKSAGKSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWYCPKCA 193 H+ C CK + +L CD C +AYH C+ PA+ ++PD W CP+C+ Sbjct: 429 DDDEHQE-----FCRVCK-DGGELLCCDSCPSAYHTFCLNPALDTIPDGDWRCPRCS 479
Score = 50.1 bits (118), Expect = 1e-04 Identities = 29/97 (29%), Positives = 43/97 (44%) Frame = -1
Query: 408 KNENKSKKLAASDETTKQLHKSAGKSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGS 229 K +NK KK E H+ CE C+ + ++ CD C AYH+ C+ P + Sbjct: 352 KKKNKLKKTKNFPEGEDGEHEH---QDYCEVCQ-QGGEIILCDTCPRAYHLVCLEPELDE 407
Query: 228 VPDESWYCPKCAENQRSSGKDVHDDSSKPDGHNCSVC 118 P+ W CP C E + ++ DD + C VC Sbjct: 408 PPEGKWSCPHC-EADGGAAEEEDDDEHQ---EFCRVC 440
>tr|B4H036|B4H036_DROPE GL22908 OS=Drosophila persimilis GN=GL22908 PE=4 SV=1 Length = 1898
Score = 79.3 bits (194), Expect = 1e-13 Identities = 38/117 (32%), Positives = 60/117 (51%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAASDET 364 C+ C +QG + I+C C A+H+ C ++ EG+W CP C + A++E Sbjct: 235 CEVC--QQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHCEADGG------AAEEE 286
Query: 363 TKQLHKSAGKSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWYCPKCA 193 H+ C CK + +L CD C +AYH C+ PA+ ++PD W CP+C+ Sbjct: 287 DDDEHQE-----FCRVCK-DGGELLCCDSCPSAYHTFCLNPALDTIPDGDWRCPRCS 337
Score = 50.1 bits (118), Expect = 1e-04 Identities = 29/97 (29%), Positives = 43/97 (44%) Frame = -1
Query: 408 KNENKSKKLAASDETTKQLHKSAGKSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGS 229 K +NK KK E H+ CE C+ + ++ CD C AYH+ C+ P + Sbjct: 210 KKKNKLKKTKNFPEGEDGEHEH---QDYCEVCQ-QGGEIILCDTCPRAYHLVCLEPELDE 265
Query: 228 VPDESWYCPKCAENQRSSGKDVHDDSSKPDGHNCSVC 118 P+ W CP C E + ++ DD + C VC Sbjct: 266 PPEGKWSCPHC-EADGGAAEEEDDDEHQ---EFCRVC 298
>tr|B3KY63|B3KY63_HUMAN cDNA FLJ16830 fis, clone UTERU3022536, highly similar to Chromodomain helicase-DNA-binding protein 4 (EC 3.6.1.-) OS=Homo sapiens PE=2 SV=1 Length = 1886
Score = 79.3 bits (194), Expect = 1e-13 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 8/124 (6%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAASDET 364 C+ C +QG + I+C C A+HM C K EG+W CP C K + + + E Sbjct: 347 CEVC--QQGGEIILCDTCPRAYHMVCLDSDMEKAPEGKWSCPHCEKEGIQWEAKEDNSEG 404
Query: 363 TKQLHKSAG--------KSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWY 208 + L + G C CK + +L CD C ++YH++C+ P + +P+ W Sbjct: 405 EEILEEVGGDLEEEDDHHMEFCRVCK-DGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWL 463
Query: 207 CPKC 196 CP+C Sbjct: 464 CPRC 467
Score = 42.7 bits (99), Expect = 0.015 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSK 388 C+ C + G + + C C +++H+ C P ++ GEW CP CT K K Sbjct: 426 CRVC--KDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 475
>tr|Q1LYP4|Q1LYP4_DANRE Novel protein similar to vertebrate chromodomain helicase DNA binding protein 4 (CHD4) OS=Danio rerio GN=si:ch211-51m24.3 PE=1 SV=1 Length = 1929
Score = 79.0 bits (193), Expect = 2e-13 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 6/122 (4%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKN--ENKSKKLAASD 370 C+ C +QG + I+C C A+HM C K EG W CP C K + ++++ A+ Sbjct: 357 CEVC--QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGTWSCPHCEKMGIQWEAREDASEG 414
Query: 369 ETTKQLHKSAGKSG----VCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWYCP 202 E + A + C CK + +L CD C ++YH++C+ P + +P+ W CP Sbjct: 415 EEDNEAGGEAEEDDHHMEFCRVCK-DGGELLCCDSCPSSYHIHCLNPPLPEIPNGEWICP 473
Query: 201 KC 196 +C Sbjct: 474 RC 475
Score = 43.1 bits (100), Expect = 0.012 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSK 388 C+ C + G + + C C +++H+ C P ++ GEW CP CT K K Sbjct: 434 CRVC--KDGGELLCCDSCPSSYHIHCLNPPLPEIPNGEWICPRCTCPSMKGK 483
>tr|A9JSS2|A9JSS2_DANRE Si:ch211-51m24.3 protein (Fragment) OS=Danio rerio GN=si:ch211-51m24.3 PE=2 SV=1 Length = 586
Score = 79.0 bits (193), Expect = 2e-13 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 6/122 (4%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKN--ENKSKKLAASD 370 C+ C +QG + I+C C A+HM C K EG W CP C K + ++++ A+ Sbjct: 356 CEVC--QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGTWSCPHCEKMGIQWEAREDASEG 413
Query: 369 ETTKQLHKSAGKSG----VCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWYCP 202 E + A + C CK + +L CD C ++YH++C+ P + +P+ W CP Sbjct: 414 EEDNEAGGEAEEDDHHMEFCRVCK-DGGELLCCDSCPSSYHIHCLNPPLPEIPNGEWICP 472
Query: 201 KC 196 +C Sbjct: 473 RC 474
Score = 43.1 bits (100), Expect = 0.012 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSK 388 C+ C + G + + C C +++H+ C P ++ GEW CP CT K K Sbjct: 433 CRVC--KDGGELLCCDSCPSSYHIHCLNPPLPEIPNGEWICPRCTCPSMKGK 482
>tr|A4IG92|A4IG92_DANRE Si:ch211-51m24.3 protein (Fragment) OS=Danio rerio GN=si:ch211-51m24.3 PE=2 SV=1 Length = 584
Score = 79.0 bits (193), Expect = 2e-13 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 6/122 (4%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKN--ENKSKKLAASD 370 C+ C +QG + I+C C A+HM C K EG W CP C K + ++++ A+ Sbjct: 356 CEVC--QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGTWSCPHCEKMGIQWEAREDASEG 413
Query: 369 ETTKQLHKSAGKSG----VCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWYCP 202 E + A + C CK + +L CD C ++YH++C+ P + +P+ W CP Sbjct: 414 EEDNEAGGEAEEDDHHMEFCRVCK-DGGELLCCDSCPSSYHIHCLNPPLPEIPNGEWICP 472
Query: 201 KC 196 +C Sbjct: 473 RC 474
Score = 43.1 bits (100), Expect = 0.012 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSK 388 C+ C + G + + C C +++H+ C P ++ GEW CP CT K K Sbjct: 433 CRVC--KDGGELLCCDSCPSSYHIHCLNPPLPEIPNGEWICPRCTCPSMKGK 482
>tr|Q8BM83|Q8BM83_MOUSE Putative uncharacterized protein (Fragment) OS=Mus musculus GN=Chd4 PE=2 SV=1 Length = 1045
Score = 79.0 bits (193), Expect = 2e-13 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 8/124 (6%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAASDET 364 C+ C +QG + I+C C A+HM C K EG+W CP C K + + + E Sbjct: 118 CEVC--QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKEDNSEG 175
Query: 363 TKQLHKSAG--------KSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWY 208 + L + G C CK + +L CD C ++YH++C+ P + +P+ W Sbjct: 176 EEILEEVGGDPEEEDDHHMEFCRVCK-DGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWL 234
Query: 207 CPKC 196 CP+C Sbjct: 235 CPRC 238
Score = 42.7 bits (99), Expect = 0.015 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSK 388 C+ C + G + + C C +++H+ C P ++ GEW CP CT K K Sbjct: 197 CRVC--KDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 246
>tr|Q5DTP7|Q5DTP7_MOUSE MKIAA4075 protein (Fragment) OS=Mus musculus GN=Chd4 PE=2 SV=1 Length = 1945
Score = 79.0 bits (193), Expect = 2e-13 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 8/124 (6%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSKKLAASDET 364 C+ C +QG + I+C C A+HM C K EG+W CP C K + + + E Sbjct: 394 CEVC--QQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGIQWEAKEDNSEG 451
Query: 363 TKQLHKSAG--------KSGVCEACKTEDDNVLRCDGCEAAYHMNCIIPAIGSVPDESWY 208 + L + G C CK + +L CD C ++YH++C+ P + +P+ W Sbjct: 452 EEILEEVGGDPEEEDDHHMEFCRVCK-DGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWL 510
Query: 207 CPKC 196 CP+C Sbjct: 511 CPRC 514
Score = 42.7 bits (99), Expect = 0.015 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -1
Query: 543 CKSCGLEQGMDYIMCRLCQAAFHMDCTGIPSNKLQEGEWCCPSCTKNENKSK 388 C+ C + G + + C C +++H+ C P ++ GEW CP CT K K Sbjct: 473 CRVC--KDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGK 522
|