NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915022
Clone id YMU001_000065_F01
Library
Length 517
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000065_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TAGCAAAAAATAATTGCCCTTCAATTTGTGAGAATATATCTCTATGTACATAGCAACCCA
CCTTACCTGTTCATTGCGACCTGCCCGAGCAATTTGAATTAATAATGAGTTTTCTACGTC
TACAAACCCATCATTCTGAGGGGTCCCTGTCTAATTCTACATGTGACTTGGTATATTTCA
ATGTGACAATATGCAAAATGCTGGCTTCTAATTTTCAAACCAATAGCTTCGATGCCTTTG
CACCTAGCCGTTTCTTTCGTGTCAGTTCTTTTCTCCTCTTTCTGGCCCCCGCCGCTGCTG
TCGGTGTCACATGAGTCACCCTCCAAGGATGTGAACAAACAAAACCCTGCCCACTCATAG
GAATGCCACCTACACTAGCAGTACAAGAAGAGCCACATGTGACTCGCAAAGGCAGCTTTA
AACCCATTTGGCAATCAATGATTTGTGGGGCTCTTGATGTGCTATGATTTTCCTCCAAAT
CACAATCACCTTGTGAATTATCAAGACTTATCGAGCC
■■Homology search results ■■ -
sp_hit_id P32841
Definition sp|P32841|RE114_YEAST Meiotic recombination protein REC114 OS=Saccharomyces cerevisiae
Align length 53
Score (bit) 32.3
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915022|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_F01.
         (517 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32841|RE114_YEAST Meiotic recombination protein REC114 OS=Sa...    32   1.4  
sp|Q7MBG6|MQO_WOLSU Probable malate:quinone oxidoreductase OS=Wo...    31   3.0  
sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus ...    31   4.0  
sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus ...    31   4.0  
sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronaviru...    31   4.0  
sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronaviru...    31   4.0  
sp|Q9S3Q5|MQO_PSEFL Probable malate:quinone oxidoreductase OS=Ps...    30   8.8  

>sp|P32841|RE114_YEAST Meiotic recombination protein REC114
           OS=Saccharomyces cerevisiae GN=REC114 PE=1 SV=3
          Length = 428

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 239 CT*PFLSCQFFSPLSGPRRCCRCHMSHPPRM*TNKTLPTHRNATYTSSTRRAT 397
           C  P +SC++ S   GPR   R  M+ P  +  N+T+ + +N  +   T R +
Sbjct: 88  CKSPIISCKYISEEFGPRMLRRFQMNLPNDVEFNRTVVSLKNLNFVLRTARTS 140


>sp|Q7MBG6|MQO_WOLSU Probable malate:quinone oxidoreductase
           OS=Wolinella succinogenes GN=mqo PE=3 SV=1
          Length = 497

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 424 GLKLPLRVTCGSSCTASVGGIPMSGQGFVCSHP 326
           G  LPL    G       GG P+SGQ  VCS+P
Sbjct: 243 GAALPLLYKSGIPEARGYGGFPVSGQWLVCSNP 275


>sp|P0C6T4|R1A_BCHK4 Replicase polyprotein 1a OS=Bat coronavirus HKU4
            GN=1a PE=3 SV=1
          Length = 4434

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 115  YVYKPIILRG-PCLILHVTWYISM*QYAKCWLLIFKPIASMPLHL 246
            Y Y    L G P  I+H++WY+        W+L    +  M  HL
Sbjct: 3137 YYYATFYLTGEPAFIMHISWYVMFGAVVPIWMLASYTVGVMLRHL 3181


>sp|P0C6F7|R1A_BC133 Replicase polyprotein 1a OS=Bat coronavirus
            133/2005 GN=1a PE=3 SV=1
          Length = 4441

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 115  YVYKPIILRG-PCLILHVTWYISM*QYAKCWLLIFKPIASMPLHL 246
            Y Y    L G P  I+H++WY+        W+L    +  M  HL
Sbjct: 3144 YYYATFYLTGEPAFIMHISWYVMFGTVVPIWMLASYTVGVMLRHL 3188


>sp|P0C6W3|R1AB_BCHK4 Replicase polyprotein 1ab OS=Bat coronavirus
            HKU4 GN=rep PE=3 SV=1
          Length = 7119

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 115  YVYKPIILRG-PCLILHVTWYISM*QYAKCWLLIFKPIASMPLHL 246
            Y Y    L G P  I+H++WY+        W+L    +  M  HL
Sbjct: 3137 YYYATFYLTGEPAFIMHISWYVMFGAVVPIWMLASYTVGVMLRHL 3181


>sp|P0C6W1|R1AB_BC133 Replicase polyprotein 1ab OS=Bat coronavirus
            133/2005 GN=rep PE=3 SV=1
          Length = 7126

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 115  YVYKPIILRG-PCLILHVTWYISM*QYAKCWLLIFKPIASMPLHL 246
            Y Y    L G P  I+H++WY+        W+L    +  M  HL
Sbjct: 3144 YYYATFYLTGEPAFIMHISWYVMFGTVVPIWMLASYTVGVMLRHL 3188


>sp|Q9S3Q5|MQO_PSEFL Probable malate:quinone oxidoreductase
           OS=Pseudomonas fluorescens GN=mqo PE=3 SV=1
          Length = 505

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 424 GLKLPLRVTCGSSCTASVGGIPMSGQGFVCSHPWRVTH 311
           G  LPL    G   +   GG P+SGQ   C +P  V H
Sbjct: 247 GAALPLLQASGIEESKGFGGFPVSGQWLRCDNPEVVKH 284
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915022|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_F01.
         (517 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******