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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915024
Clone id YMU001_000065_F03
Library
Length 442
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000065_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGTGATTGGCCGGCCATCAACTAGGCTTTTGAACTCTTGCAAGTTCTTAGGTGCTTCAA
TCACAAAGGGGAGTTCACCCATGCTGCGAGAAGGTTTGGTGGTTTTAGCTGCATGAACCT
GGGCCCTGGCCATCAAAGCCTCCTCTTTAATTACCATTGTATTCGCTGCACCGACTGGGG
ACGAGGTGCTCAATGTCTTCCCATGAGCACCCAAAACCTCATCATCACTTTCCTCCCATG
CATCATTTTCCACTTCCCTCTCTTCAGATTCCTCTTCGCTCCCCATATCACTGTCAGAAT
CTTCATTCATCAAAGCCTTGTCCTTTTCTTCACTGTCTAGATCCTCCTCTTCACCTTCTT
CATTTCTAGCAAGTACCTCATCCACCCATCCTTTCTTGGGATCATCATCATCATTTGCAA
AGTTCTCACCAAGATCATCCCC
■■Homology search results ■■ -
sp_hit_id Q1KVT1
Definition sp|Q1KVT1|RR18_SCEOB 30S ribosomal protein S18, chloroplastic OS=Scenedesmus obliquus
Align length 29
Score (bit) 29.3
E-value 7.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915024|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_F03.
         (442 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1KVT1|RR18_SCEOB 30S ribosomal protein S18, chloroplastic OS...    29   7.7  
sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor ATP-depe...    29   7.7  
sp|Q3B2G4|DAPA_PELLD Dihydrodipicolinate synthase OS=Pelodictyon...    29   7.7  
sp|Q5DTJ9|MYPN_MOUSE Myopalladin OS=Mus musculus GN=Mypn PE=2 SV=2     29   10.0 

>sp|Q1KVT1|RR18_SCEOB 30S ribosomal protein S18, chloroplastic
           OS=Scenedesmus obliquus GN=rps18 PE=3 SV=1
          Length = 188

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 148 KEEALMARAQVHAAKTTKPSRSMGELPFV 62
           ++  L A+ Q + AKT K +R MG LPFV
Sbjct: 152 RQTKLTAKQQRYVAKTIKSARIMGLLPFV 180


>sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor
           ATP-dependent RNA helicase mog-4 OS=Caenorhabditis
           elegans GN=mog-4 PE=2 SV=2
          Length = 1008

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 26  AFELLQVLRCFNHKGEFTHAARRFGGFSC 112
           A E L  L   NH+GE T   RR   F C
Sbjct: 758 ALEQLYALGALNHRGELTKLGRRMAEFPC 786


>sp|Q3B2G4|DAPA_PELLD Dihydrodipicolinate synthase OS=Pelodictyon
           luteolum (strain DSM 273) GN=dapA PE=3 SV=1
          Length = 296

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 118 VHAAKTTKPSRSMGELPFVIEAPKNLQEFKSLVDGRP 8
           V AA   + +R    +  V EA  N+Q+   L+DGRP
Sbjct: 147 VDAATVLRLARDFANITAVKEATDNMQQIAELLDGRP 183


>sp|Q5DTJ9|MYPN_MOUSE Myopalladin OS=Mus musculus GN=Mypn PE=2 SV=2
          Length = 1315

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 199 KTLSTSSPVGAANTMVIKEEALMARAQVHAAKTTKPSRSMGELPFVIEAPK 47
           K +  SS  GAANT   +  +   R     A+  +PS  + E P V+  PK
Sbjct: 604 KDMEASSGSGAANTSQTRPNSFPERFNGQEARIPEPSSPIKEPPPVLAKPK 654
tr_hit_id A9S6T6
Definition tr|A9S6T6|A9S6T6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 155
Score (bit) 56.6
E-value 6.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915024|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_F03.
         (442 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S6T6|A9S6T6_PHYPA Predicted protein OS=Physcomitrella paten...    57   6e-07
tr|B4YPW0|B4YPW0_BRAOA Putative uncharacterized protein OS=Brass...    50   4e-05
tr|Q9LQB3|Q9LQB3_ARATH F4N2.4 OS=Arabidopsis thaliana PE=4 SV=1        50   7e-05
tr|Q8H8R4|Q8H8R4_ORYSJ Putative uncharacterized protein OJ1523_A...    39   0.17 
tr|Q10H82|Q10H82_ORYSJ Nop14-like family protein, expressed OS=O...    39   0.17 
tr|Q0DQG5|Q0DQG5_ORYSJ Os03g0598200 protein OS=Oryza sativa subs...    39   0.17 
tr|B8AM42|B8AM42_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|A3AK58|A3AK58_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|B3RKU6|B3RKU6_TRIAD Putative uncharacterized protein OS=Trich...    34   3.1  

>tr|A9S6T6|A9S6T6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_181805 PE=4 SV=1
          Length = 942

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 9/155 (5%)
 Frame = -1

Query: 442 GDDLGENFANDDDDPKKGWVDEVLARNXXXXXXXXXXXXXDK---------ALMNXXXXX 290
           GDDLGENF  +D+  + GWVDEVLAR              D+         +  +     
Sbjct: 368 GDDLGENFVMEDEYQENGWVDEVLARKGDSDEDEDEDEDEDEDEEDDDDGSSARSEEDAD 427

Query: 289 XXXXXXXXXXXXXXXDAWEESDDEVLGAHGKTLSTSSPVGAANTMVIKEEALMARAQVHA 110
                          + WE S+DE+ G  G       P  +A    + ++ + A+ +   
Sbjct: 428 SEGSDDEDESEGSEDEDWENSEDELAGIEG------IPKLSAKDQNLLDKLIAAKTKKAK 481

Query: 109 AKTTKPSRSMGELPFVIEAPKNLQEFKSLVDGRPI 5
              +  +     LP+VI+AP+ L +F+ LVD R I
Sbjct: 482 KPVSGGNELDSALPYVIDAPQTLVDFRQLVDSRSI 516


>tr|B4YPW0|B4YPW0_BRAOA Putative uncharacterized protein OS=Brassica
           oleracea var. alboglabra GN=BoB029L16.30 PE=4 SV=1
          Length = 879

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 18/162 (11%)
 Frame = -1

Query: 442 GDDLGENFANDDDDPKKGWVDEVLARNXXXXXXXXXXXXXDKALMNXXXXXXXXXXXXXX 263
           GDDLG++F+ D + PKKGW+DEVL R              D    +              
Sbjct: 315 GDDLGDSFSADAEQPKKGWIDEVLEREGDDEDSESEGEEED----DDDEEEESDGGDEKQ 370

Query: 262 XXXXXXDAWEESDDE------------------VLGAHGKTLSTSSPVGAANTMVIKEEA 137
                   WE+SDDE                  ++    K  S++   G  ++  +K+  
Sbjct: 371 RKGHPLKDWEQSDDELEAELEGDDDEEEEEAEPIVHKKSKKDSSAPTKGKGSSGTVKQST 430

Query: 136 LMARAQVHAAKTTKPSRSMGELPFVIEAPKNLQEFKSLVDGR 11
            M           K S +  ++P+VI APK+ +E  +LV+ R
Sbjct: 431 NM----------KKLSSTQHDIPYVIHAPKSFEELIALVEDR 462


>tr|Q9LQB3|Q9LQB3_ARATH F4N2.4 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 891

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 16/158 (10%)
 Frame = -1

Query: 442 GDDLGENFANDDDDPKKGWVDEVLARNXXXXXXXXXXXXXDKALMNXXXXXXXXXXXXXX 263
           GDDLG++F+ ++D PK+GW+D+VL R               ++                 
Sbjct: 325 GDDLGDSFSVEEDKPKRGWIDDVLEREDNVDNSESDEDEDSESEEEEDDDGESDGGDEKQ 384

Query: 262 XXXXXXDAWEESDDEVLGA----------------HGKTLSTSSPVGAANTMVIKEEALM 131
                 + WE+SDDE LGA                    L     +        K E L 
Sbjct: 385 RKGHHLEDWEQSDDE-LGAELEDEEEDDDEEDDDEEDAELRVHKKLKNDYAAPYKGEGLS 443

Query: 130 ARAQVHAAKTTKPSRSMGELPFVIEAPKNLQEFKSLVD 17
              +       K S +  ++PF+I+ PKN +E  +LV+
Sbjct: 444 GTVK-EKTNMKKMSSTQRDIPFMIDPPKNFEELLALVE 480


>tr|Q8H8R4|Q8H8R4_ORYSJ Putative uncharacterized protein
           OJ1523_A02.5 (Putative uncharacterized protein
           OSJNBa0087M10.7) OS=Oryza sativa subsp. japonica
           GN=OJ1523_A02.5 PE=4 SV=2
          Length = 952

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -1

Query: 238 WEESDD-EVLGAHGKTLSTSSPVGAANTMVIKEEALMARAQVHAAKTTKPSRSMGELPFV 62
           WE+SDD EV     +           +  V+K++   ++ + +A    K       LPFV
Sbjct: 459 WEQSDDDEVTVEEDEMEGLKQKEQKISGKVVKKDLQNSKKESNAESQVKDDN----LPFV 514

Query: 61  IEAPKNLQEFKSLVDG 14
           IEAP NL++  SL+DG
Sbjct: 515 IEAPSNLKDLCSLLDG 530


>tr|Q10H82|Q10H82_ORYSJ Nop14-like family protein, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os03g40110 PE=4
           SV=1
          Length = 929

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -1

Query: 238 WEESDD-EVLGAHGKTLSTSSPVGAANTMVIKEEALMARAQVHAAKTTKPSRSMGELPFV 62
           WE+SDD EV     +           +  V+K++   ++ + +A    K       LPFV
Sbjct: 436 WEQSDDDEVTVEEDEMEGLKQKEQKISGKVVKKDLQNSKKESNAESQVKDDN----LPFV 491

Query: 61  IEAPKNLQEFKSLVDG 14
           IEAP NL++  SL+DG
Sbjct: 492 IEAPSNLKDLCSLLDG 507


>tr|Q0DQG5|Q0DQG5_ORYSJ Os03g0598200 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0598200 PE=4 SV=1
          Length = 912

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -1

Query: 238 WEESDD-EVLGAHGKTLSTSSPVGAANTMVIKEEALMARAQVHAAKTTKPSRSMGELPFV 62
           WE+SDD EV     +           +  V+K++   ++ + +A    K       LPFV
Sbjct: 419 WEQSDDDEVTVEEDEMEGLKQKEQKISGKVVKKDLQNSKKESNAESQVKDDN----LPFV 474

Query: 61  IEAPKNLQEFKSLVDG 14
           IEAP NL++  SL+DG
Sbjct: 475 IEAPSNLKDLCSLLDG 490


>tr|B8AM42|B8AM42_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12505 PE=4 SV=1
          Length = 947

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -1

Query: 238 WEESDD-EVLGAHGKTLSTSSPVGAANTMVIKEEALMARAQVHAAKTTKPSRSMGELPFV 62
           WE+SDD EV     +           +  V+K++   ++ + +A    K       LPFV
Sbjct: 454 WEQSDDDEVTVEEDEMEGLKQKEQKISGKVVKKDLQNSKKESNAESQVKDDN----LPFV 509

Query: 61  IEAPKNLQEFKSLVDG 14
           IEAP NL++  SL+DG
Sbjct: 510 IEAPSNLKDLCSLLDG 525


>tr|A3AK58|A3AK58_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011180 PE=4 SV=1
          Length = 951

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -1

Query: 238 WEESDD-EVLGAHGKTLSTSSPVGAANTMVIKEEALMARAQVHAAKTTKPSRSMGELPFV 62
           WE+SDD EV     +           +  V+K++   ++ + +A    K       LPFV
Sbjct: 458 WEQSDDDEVTVEEDEMEGLKQKEQKISGKVVKKDLQNSKKESNAESQVKDDN----LPFV 513

Query: 61  IEAPKNLQEFKSLVDG 14
           IEAP NL++  SL+DG
Sbjct: 514 IEAPSNLKDLCSLLDG 529


>tr|B3RKU6|B3RKU6_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_51771 PE=4 SV=1
          Length = 458

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = -1

Query: 229 SDDEVLGAHGKTLSTSSPVGAANTMVIKEEALMARAQVHAAKTTKPSRSMGELPFVI 59
           S+D V+   GKTL+T+S VG   T+                 TTKPS S   +PFV+
Sbjct: 313 SEDAVISCSGKTLTTTSAVGYTATVA----------------TTKPSESRTAVPFVL 353