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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915030
Clone id YMU001_000065_F09
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000065_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGAACATTGTGGAGGTCTTACCCTCTTCAGATTCTGAGACAAAAATACAATTGAAAGCAA
TGATGAGAGCACAGGCAAAACGGGAAACAACAAGCGAGAAAGAGGGTAGCCGCTCTCACA
AATTTGTTAGTGCAAAATCAGTCAGAAAAGCCAAAATTAGAGCCCAATATCATAAGAAGT
TAAAGGCTATTACAATTCAATTGTCACTAGCTCGAGAGCAATCATATCAACCTACAAAAC
CCACATCTAGTATCATACTAGAGCGAAAACGTCTTGAAGGCCCTTGTTCCGTGTAACTTT
GGCAGGCTTGCTAAAGAATGAGCCCATGGCACATATTTCAAGGGCCTACGCCCATGAAAA
CCAACTTACATGAAAAGCTTCAAACTCAAAAGCTTCTCGTCCAAAAACTAGTGCTAATAA
GCTACCAATGCAAATTACGAAAATCAGTACACCTGTCCGTATAATCTACCACGTCATCAG
CCAACGCCAAATCTTGGCGTCCGTACACTGCCACATCATCAATTTTTTACACTAGGTCTT
C
■■Homology search results ■■ -
sp_hit_id A8GI73
Definition sp|A8GI73|ASR_SERP5 Acid shock protein OS=Serratia proteamaculans (strain 568)
Align length 73
Score (bit) 33.9
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915030|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_F09.
         (541 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8GI73|ASR_SERP5 Acid shock protein OS=Serratia proteamaculan...    34   0.52 
sp|Q6NN85|SSH_DROME Protein phosphatase Slingshot OS=Drosophila ...    30   5.7  
sp|P35659|DEK_HUMAN Protein DEK OS=Homo sapiens GN=DEK PE=1 SV=1       30   7.5  

>sp|A8GI73|ASR_SERP5 Acid shock protein OS=Serratia proteamaculans
           (strain 568) GN=asr PE=3 SV=1
          Length = 138

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 39  TKIQLKAMMRAQAKRETTSEKE--GSRSHKFVSAKSVRKAKIRAQYHKKLKAITIQLSLA 212
           TK   KA    +A ++  ++K     + HK       +KA+   ++HK  KA   Q + A
Sbjct: 45  TKAPAKATHHKKAHKKAPAQKAQAAKKHHKATKKAPAQKAQAAKKHHKATKAAPAQKAQA 104

Query: 213 REQSYQPTKPTSS 251
            ++ ++ TKP ++
Sbjct: 105 AKKHHKATKPAAA 117


>sp|Q6NN85|SSH_DROME Protein phosphatase Slingshot OS=Drosophila
           melanogaster GN=ssh PE=1 SV=2
          Length = 1045

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
 Frame = +3

Query: 15  VLPSSDSETKIQLKAMMRAQAKRETT-----SEKEGSRSHKFVSAKSVRKAKIRAQYHKK 179
           +LP S+    IQ     ++++  E        E++GSR H+   A+  ++  +R      
Sbjct: 548 LLPGSEPTPLIQALNQAKSKSTGEAGVTPDGEEEDGSRMHRRSIAQKSQRRMVRRSSSTS 607

Query: 180 LKAITIQLSLAREQSYQPTKPTSSIILERKRLEGPCS 290
            K  T  ++  + QS +   P  S+  E K +  P S
Sbjct: 608 PKTQTAVVTKQQSQSMENLTPERSVAEEPKNMRFPGS 644


>sp|P35659|DEK_HUMAN Protein DEK OS=Homo sapiens GN=DEK PE=1 SV=1
          Length = 375

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 24  SSDSETKIQLKAMMRAQAKRETTSEKEGSRSHKFVSAKSVRKA 152
           SSD E K   +   +  AKRE   +K  S+S K V + +V+KA
Sbjct: 243 SSDDEDKESEEEPPKKTAKREKPKQKATSKSKKSVKSANVKKA 285
tr_hit_id Q0U8P5
Definition tr|Q0U8P5|Q0U8P5_PHANO Putative uncharacterized protein OS=Phaeosphaeria nodorum
Align length 90
Score (bit) 35.4
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915030|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_F09.
         (541 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0U8P5|Q0U8P5_PHANO Putative uncharacterized protein OS=Phaeo...    35   1.9  
tr|B7Q621|B7Q621_IXOSC Voltage-gated calcium channel, putative (...    35   3.3  
tr|B4JIE6|B4JIE6_DROGR GH18505 OS=Drosophila grimshawi GN=GH1850...    34   4.3  
tr|Q5BA26|Q5BA26_EMENI Predicted protein OS=Emericella nidulans ...    33   7.3  
tr|B8IQU0|B8IQU0_METNO Chromosome segregation protein SMC OS=Met...    33   9.5  

>tr|Q0U8P5|Q0U8P5_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_11869 PE=4 SV=2
          Length = 607

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = +3

Query: 21  PSSDSETKIQLKAMM-RAQAKRETTSEKEGSRSHKFVSAKS-VRKAKIRAQYHKKLKAIT 194
           P ++ E+    KA   R ++ R  T +KE  R+HKFVS +S    A  +A+Y    K  +
Sbjct: 163 PRTEKESSRTTKATADRTRSDRTKTRDKEDRRNHKFVSVESESSSADEKARYEAGYKRRS 222

Query: 195 IQLSLAREQSYQPTKPTSSIILERKRLEGP 284
            +  + R+ +    KP      E  R E P
Sbjct: 223 QEEEVRRQSADTRRKPDERRSYEDPRYETP 252


>tr|B7Q621|B7Q621_IXOSC Voltage-gated calcium channel, putative
           (Fragment) OS=Ixodes scapularis GN=IscW_ISCW011557 PE=4
           SV=1
          Length = 428

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +2

Query: 5   HCGGLTLFRF*DKNTIESNDESTGKTGNNKRERG 106
           HCG L L  F D+N +ESN E +   GN K  RG
Sbjct: 156 HCGLLLLVGFADQNGLESNVEESDSPGNTKLGRG 189


>tr|B4JIE6|B4JIE6_DROGR GH18505 OS=Drosophila grimshawi GN=GH18505
            PE=4 SV=1
          Length = 1684

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 24/66 (36%), Positives = 31/66 (46%)
 Frame = +3

Query: 21   PSSDSETKIQLKAMMRAQAKRETTSEKEGSRSHKFVSAKSVRKAKIRAQYHKKLKAITIQ 200
            PS+ S  +++  A+  A A    TS    S SHK     S R A   A+  +KLKA T  
Sbjct: 1060 PSTSSFVRLEPSALDAAIAAAPITSSSSSSSSHKHSHTGSTRSA---ARKERKLKASTAD 1116

Query: 201  LSLARE 218
              LA E
Sbjct: 1117 AQLATE 1122


>tr|Q5BA26|Q5BA26_EMENI Predicted protein OS=Emericella nidulans
           GN=AN2604.2 PE=4 SV=1
          Length = 401

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = +3

Query: 63  MRAQAKRETTSE------KEGSRSHKFVSAKSVRKAKIRAQYHKKLKAITIQLSLAREQS 224
           + A AK ETT        + G+R  ++ +   +   + R + HK      I+L L  +Q 
Sbjct: 86  VEAAAKLETTYRALMQDIQSGARIPQYYAMTKLVMRRGRIEKHKSRLQDVIRLLLLSQQC 145

Query: 225 YQPTKPTSSIILERKRLEGPCSV*LWQA 308
           Y    PT+ + + RK     C   +W+A
Sbjct: 146 YTRNYPTAGVGVGRKPSSSRCKAFVWRA 173


>tr|B8IQU0|B8IQU0_METNO Chromosome segregation protein SMC
           OS=Methylobacterium nodulans ORS 2060 GN=Mnod_7655 PE=4
           SV=1
          Length = 1148

 Score = 33.1 bits (74), Expect = 9.5
 Identities = 21/82 (25%), Positives = 41/82 (50%)
 Frame = +3

Query: 30  DSETKIQLKAMMRAQAKRETTSEKEGSRSHKFVSAKSVRKAKIRAQYHKKLKAITIQLSL 209
           ++E + Q  A  RA +     + +E  R  + V+A+ VR  +  A+    L  ++ +L+ 
Sbjct: 750 EAEARRQAAAEARAASLTLARAAEERRRRREAVAAEQVRWRERAARSEAALDELSERLAA 809

Query: 210 AREQSYQPTKPTSSIILERKRL 275
           A E+  +  +     +LER+RL
Sbjct: 810 AEEEQAELAEAPDGFVLERRRL 831