NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915037
Clone id YMU001_000065_G05
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000065_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTGATGCTTCTAGAGAACCACTTATACGAGAGCTGTATTTGGGGTTGTGGTCAATAGCT
TGGCAATCAGTACGAGACATTTTGGTATGCTGGTTTTGACACTAGAGGGCGCTCAGAGAG
GTGTGTGTATCTCTATCGTGAATTCCTCGAGGTATGTTATTGTGGACAGAGGGGGGCGTT
GATTGGCTTGTTGGATGTCTATGCACCCTACCATGTGAGCGCTCGGGTAGGGGGCTTCTA
TAGTCGGGGCCCTGCTTGCTATGGAGCATTGGTGTGTTGAAAGGTCCTATCTGATAGAGT
GGGGAGAAGCCACACTACAGTCGCATGTAGTGAGCTCGCACGTAGGAGAGCTTATGTATG
ACTTTGAGGTTGTCTTATGTATGGCAGAAAGAGGCTTTTGTGCGACAGCAGAGGTCTCTC
GCTCTTGACAGCAGAGGCTTTTGTGCGACAGCAGAGGTCTCTCGCTCAGAAATCTTGGGA
GGGGTCAACATCTCACAGCCAGATCAATTCTATCTTGGCAACTTCTTGGGCTT
■■Homology search results ■■ -
sp_hit_id P60789
Definition sp|P60789|LEPA_GEOSL GTP-binding protein lepA OS=Geobacter sulfurreducens
Align length 30
Score (bit) 31.6
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915037|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_G05.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P60789|LEPA_GEOSL GTP-binding protein lepA OS=Geobacter sulfu...    32   2.5  
sp|Q9Y493|ZAN_HUMAN Zonadhesin OS=Homo sapiens GN=ZAN PE=2 SV=3        31   3.3  
sp|P41809|HKR1_YEAST Hansenula MRAKII killer toxin-resistant pro...    31   3.3  
sp|Q8N9L1|ZIC4_HUMAN Zinc finger protein ZIC 4 OS=Homo sapiens G...    30   7.3  
sp|Q39US7|LEPA_GEOMG GTP-binding protein lepA OS=Geobacter metal...    30   9.5  
sp|Q61169|GATA6_MOUSE Transcription factor GATA-6 OS=Mus musculu...    30   9.5  
sp|Q75NT5|AHRR_RAT Aryl hydrocarbon receptor repressor OS=Rattus...    30   9.5  

>sp|P60789|LEPA_GEOSL GTP-binding protein lepA OS=Geobacter
           sulfurreducens GN=lepA PE=3 SV=1
          Length = 600

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 202 IDIQQANQRPPLSTITYLEE--FTIEIHTP 119
           I I+ ANQ PPL  I Y+EE      IHTP
Sbjct: 384 ITIESANQLPPLQEIDYIEEPFILASIHTP 413


>sp|Q9Y493|ZAN_HUMAN Zonadhesin OS=Homo sapiens GN=ZAN PE=2 SV=3
          Length = 2812

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 3/153 (1%)
 Frame = -2

Query: 478  PRFLSERPLLSHKSLCCQERETSAVAQKPLSAIHKTTSKSYISSPTCELTTCDCSVASPH 299
            P   +E+P +S +       ET+   +KP   + K T  +  ++ + E TT      +  
Sbjct: 787  PTIPTEKPTISTEEPTTPTEETTISTEKPSIPMEKPTLPTEETTTSVEETTISTEKLTIP 846

Query: 298  SIR*DLSTHQCSIASRAPTIEAPYPSAHMVGCIDIQQANQRPPL---STITYLEEFTIEI 128
              +  +ST + +I +  PTI    P    +    +    ++P +    T    E+ TI  
Sbjct: 847  MEKPTISTEKPTIPTEKPTIS---PEKLTIPTEKLTIPTEKPTIPIEETTISTEKLTIPT 903

Query: 127  HTPL*APSSVKTSIPKCLVLIAKLLTTTPNTAL 29
              P  +P     S  K  +   K    T  T +
Sbjct: 904  EKPTISPEKPTISTEKPTIPTEKPTIPTEETTI 936


>sp|P41809|HKR1_YEAST Hansenula MRAKII killer toxin-resistant
           protein 1 OS=Saccharomyces cerevisiae GN=HKR1 PE=1 SV=2
          Length = 1802

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 5/131 (3%)
 Frame = -2

Query: 415 TSAVAQKPLSAIHKT-----TSKSYISSPTCELTTCDCSVASPHSIR*DLSTHQCSIASR 251
           TS+    P S++H T     +S +YISS      +   SV+S   +     +   S +S 
Sbjct: 396 TSSTNTVPYSSVHSTFVHATSSSTYISSSLYSSPSLSASVSSHFGVA-PFPSAYISFSSV 454

Query: 250 APTIEAPYPSAHMVGCIDIQQANQRPPLSTITYLEEFTIEIHTPL*APSSVKTSIPKCLV 71
              + + Y S+     + +  A    P   +     +T     P  A SS  TS P   V
Sbjct: 455 PVAVSSTYTSSPSASVV-VPSAYASSPSVPVAVSSTYTSSPSAPA-AISSTYTSSPSAPV 512

Query: 70  LIAKLLTTTPN 38
            ++   T++P+
Sbjct: 513 AVSSTYTSSPS 523


>sp|Q8N9L1|ZIC4_HUMAN Zinc finger protein ZIC 4 OS=Homo sapiens
           GN=ZIC4 PE=2 SV=3
          Length = 334

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = -2

Query: 430 CQERETSAVAQKPLSAIHKTTSKSYISSPTCELTTCDCSVASPHSIR*DLSTHQCSIASR 251
           C+ R  ++  +K  S +H T+ K Y    TC++  CD     P S+R  +  H      R
Sbjct: 241 CERRFANSSDRKKHSHVH-TSDKPY----TCKVRGCDKCYTHPSSLRKHMKVH-----GR 290

Query: 250 APTIEAPYPSA 218
           +P   + Y SA
Sbjct: 291 SPPPSSGYDSA 301


>sp|Q39US7|LEPA_GEOMG GTP-binding protein lepA OS=Geobacter
           metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
           GN=lepA PE=3 SV=2
          Length = 599

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 202 IDIQQANQRPPLSTITYLEE--FTIEIHTP 119
           I I+ ANQ PP   I Y+EE      IHTP
Sbjct: 384 ISIESANQLPPTQEIDYVEEPFILASIHTP 413


>sp|Q61169|GATA6_MOUSE Transcription factor GATA-6 OS=Mus musculus
           GN=Gata6 PE=2 SV=3
          Length = 589

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 305 SPLYQIGPFNTPMLHSKQGPDYRSPLP 225
           +P +  GPF TP+LHS QG    +PLP
Sbjct: 340 TPAWPAGPFETPVLHSLQG-RAGAPLP 365


>sp|Q75NT5|AHRR_RAT Aryl hydrocarbon receptor repressor OS=Rattus
           norvegicus GN=Ahrr PE=2 SV=1
          Length = 701

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 266 LHSKQGPDYRSPL--PERSHGRVHRHPTSQSTPPSVHNNIP 150
           +H K  PDYR  +  P R HG +  +P S+ T  S   + P
Sbjct: 580 MHLKTEPDYRQQVCTPHRGHGILGTNPHSRDTVGSCREHAP 620
tr_hit_id Q5ART7
Definition tr|Q5ART7|Q5ART7_EMENI Putative uncharacterized protein OS=Emericella nidulans
Align length 37
Score (bit) 33.9
E-value 0.72
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915037|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_G05.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5ART7|Q5ART7_EMENI Putative uncharacterized protein OS=Emeri...    34   0.72 
tr|A4R3H7|A4R3H7_MAGGR Putative uncharacterized protein OS=Magna...    35   1.8  
tr|Q2QKJ8|Q2QKJ8_DANRE Fog2b OS=Danio rerio GN=zfpm2b PE=2 SV=1        35   2.4  
tr|Q1LYK9|Q1LYK9_DANRE Novel protein containing a zinc finger do...    35   2.4  
tr|B2B4D0|B2B4D0_PODAN Predicted CDS Pa_2_860 OS=Podospora anser...    35   2.4  
tr|B0XKJ4|B0XKJ4_CULQU Set domain protein OS=Culex quinquefascia...    34   5.4  
tr|B6MU22|B6MU22_BRAFL Putative uncharacterized protein OS=Branc...    33   7.0  
tr|B0VS82|B0VS82_ACIBS Putative membrane protien OS=Acinetobacte...    33   9.2  
tr|A3M406|A3M406_ACIBT Putative threonine efflux protein OS=Acin...    33   9.2  
tr|B4QL53|B4QL53_DROSI GD12546 OS=Drosophila simulans GN=GD12546...    33   9.2  
tr|A4H9L0|A4H9L0_LEIBR Putative uncharacterized protein OS=Leish...    33   9.2  
tr|Q46AF6|Q46AF6_METBF Type II restriction enzyme, methylase sub...    33   9.2  

>tr|Q5ART7|Q5ART7_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN8993.2 PE=4 SV=1
          Length = 903

 Score = 33.9 bits (76), Expect(2) = 0.72
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 284 PFNTPMLHSKQGPDYRSPLPERSHGRVHRHPTSQSTP 174
           P N   L     P  R P+P+  HGR H HPT+ S P
Sbjct: 551 PINKATLSEMTAPHRRKPIPQ-PHGRSHSHPTAISHP 586



 Score = 21.6 bits (44), Expect(2) = 0.72
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 385 AIHKTTSKSYISSPTC 338
           ++H   S SYI SP C
Sbjct: 534 SVHSNHSYSYILSPIC 549


>tr|A4R3H7|A4R3H7_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_02240 PE=4 SV=1
          Length = 1108

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -1

Query: 311 GFSPLYQIGPFNTPMLHSKQGPDYRSPLPERSHGRVHRHPTSQSTPPSVHNNIPRG 144
           G  P  ++  + TP  + +  P    P   R  GR+H+ P   S+ P ++NN+P G
Sbjct: 255 GMYPTPEVQRYGTPQEYRRGPPPMNEP--GREPGRMHQGPPRPSSQPKMYNNMPPG 308


>tr|Q2QKJ8|Q2QKJ8_DANRE Fog2b OS=Danio rerio GN=zfpm2b PE=2 SV=1
          Length = 1093

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -2

Query: 472 FLSERPLLSHKSLCC--QERETSAVAQKPLSAIHKTTSKSYISSPTCELTTCDCSVASPH 299
           F SER L +H    C  ++R+   VA+K  +  H+           C    C+ S A  H
Sbjct: 255 FRSERNLQAHLMYYCSGRQRDPEMVAEKNANISHQMLRN-------CTYPQCNMSFAGSH 307

Query: 298 SIR*DLSTHQC 266
           ++   LSTH C
Sbjct: 308 ALEMHLSTHNC 318


>tr|Q1LYK9|Q1LYK9_DANRE Novel protein containing a zinc finger
           domain (Fragment) OS=Danio rerio GN=zfpm2b PE=4 SV=1
          Length = 993

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -2

Query: 472 FLSERPLLSHKSLCC--QERETSAVAQKPLSAIHKTTSKSYISSPTCELTTCDCSVASPH 299
           F SER L +H    C  ++R+   VA+K  +  H+           C    C+ S A  H
Sbjct: 155 FRSERNLQAHLMYYCSGRQRDPEMVAEKNANISHQMLRN-------CTYPQCNMSFAGSH 207

Query: 298 SIR*DLSTHQC 266
           ++   LSTH C
Sbjct: 208 ALEMHLSTHNC 218


>tr|B2B4D0|B2B4D0_PODAN Predicted CDS Pa_2_860 OS=Podospora anserina
           PE=4 SV=1
          Length = 137

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = -2

Query: 397 KPLSAIHKTTSKSYISSPTCELTTCDCSVASPHSIR*DLSTHQCSIASRAPTIEAPYPSA 218
           +P +  +  T+ +   + T  +T C C+V  P +    +  H C+      T+ AP P+ 
Sbjct: 36  EPTTVEYGGTTYTITEATTLTITDCPCTVKKPVTTISSVICHDCAPVYHNSTV-APGPTT 94

Query: 217 HMVGCIDIQQANQRPPLST 161
             VG I  Q A  +PPL+T
Sbjct: 95  TPVGTIG-QPAPTQPPLAT 112


>tr|B0XKJ4|B0XKJ4_CULQU Set domain protein OS=Culex quinquefasciatus
           GN=CpipJ_CPIJ019856 PE=4 SV=1
          Length = 419

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 30/145 (20%), Positives = 56/145 (38%), Gaps = 4/145 (2%)
 Frame = -2

Query: 451 LSHKSLCCQERETSAVAQKPLSAIHKTTSKSYISSPTCELTTCDCSVASPHSIR*DLSTH 272
           LS     C  +  S + +    A  ++    ++  P C +  C  + ASP  +  D +T 
Sbjct: 162 LSKMCYFCSRKGASLMCKVDTQATSRSRVSKHLFFPRCPVQNCSTTRASPRPVAGDTTTE 221

Query: 271 Q---CSIASRAPTIEA-PYPSAHMVGCIDIQQANQRPPLSTITYLEEFTIEIHTPL*APS 104
           +     +  + P + A   P+   +  +D+    + PP      L +      TP+  P 
Sbjct: 222 RDVDSEVRLKVPVLSAGRRPTGRRLSAVDVTSIVEAPPHLLQKKLTQ------TPISTPK 275

Query: 103 SVKTSIPKCLVLIAKLLTTTPNTAL 29
           S      K ++  A+ +TT    AL
Sbjct: 276 STPKPEEK-IIPFAQAITTWTEFAL 299


>tr|B6MU22|B6MU22_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_86715 PE=4 SV=1
          Length = 963

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 9/162 (5%)
 Frame = -2

Query: 490 C*PLPRFLSERPLLS----HKSLCCQERETSAVAQKPLSAIHKTTSKSYISSPTCELTTC 323
           C P+PR   + P L     H  LC        +A +  S  H   ++   ++      T 
Sbjct: 60  CSPVPRLCRQAPRLCSPAPHAQLCSPAPRLCTLAPRLCSPAHDFAARHRRTTLQPSTATV 119

Query: 322 DCSVAS--PHSIR*DLSTHQCSIASRAPTIEAPYPSAHMVGCIDIQQANQRPPLSTITYL 149
             S A+  P + R  L     ++ S   T++   PS   V           PP +  T L
Sbjct: 120 QASTATVQPSTARTALPPSTATVHSSTTTVQ---PSTTTV-----------PPGTARTTL 165

Query: 148 --EEFTIEIHTPL*APSSVKTSIPKCLVLI-AKLLTTTPNTA 32
                T++  T    PS+ +T++P C   +    +T  P TA
Sbjct: 166 PPSTATVQASTTTVQPSTARTTLPPCSTTVQPSTMTVQPRTA 207


>tr|B0VS82|B0VS82_ACIBS Putative membrane protien OS=Acinetobacter
           baumannii (strain SDF) GN=ABSDF2336 PE=4 SV=1
          Length = 197

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = -3

Query: 444 TKASAVKSERPLLSHKSLFLPYIRQPQSHT*ALLRASSLHATVVWLLPTL 295
           T +  +K +RPL++ K+LFL  +  P+    ALL AS++     W +P L
Sbjct: 90  TSSEDIKLDRPLITPKALFLATLLNPK----ALLFASAIFPHAAWEIPHL 135


>tr|A3M406|A3M406_ACIBT Putative threonine efflux protein
           OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC
           755) GN=A1S_1220 PE=4 SV=2
          Length = 197

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = -3

Query: 444 TKASAVKSERPLLSHKSLFLPYIRQPQSHT*ALLRASSLHATVVWLLPTL 295
           T +  +K +RPL++ K+LFL  +  P+    ALL AS++     W +P L
Sbjct: 90  TSSEDIKLDRPLITPKALFLATLLNPK----ALLFASAIFPHTAWEIPHL 135


>tr|B4QL53|B4QL53_DROSI GD12546 OS=Drosophila simulans GN=GD12546
           PE=4 SV=1
          Length = 481

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -1

Query: 248 PDYRSPLPERSHGRVHRHPTSQSTPPSVHNNIPRGIHDRDTHTSLSAL*CQNQHTKMSRT 69
           P    P P RS GR  R P  + TP   H+NI +  H R+T    + + C     K  RT
Sbjct: 48  PHRGGPGPVRSTGRRRRIPRRRETPRPKHHNIRKRKHHRNTRKPRTHVPCTK---KKKRT 104

Query: 68  D 66
           +
Sbjct: 105 E 105