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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915045
Clone id YMU001_000065_H03
Library
Length 327
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000065_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGATGCTCCCGAATCCACAAGCATCACTCACAGAGGTATGACAATACTATGAATGAGTCA
ACTGAACAATGCTTCCCTCTCCATCTCACAACTTTAATACAAGACCAAGGGAGAGACATC
ACGGAAGAGCTCTCATGATCAAAATATAACTTCCCATCATCCAAGACTCTGAATATCAGA
TCCCCAAAACAGGCAAGCAACGAGTGATCAAAGGCCTCAATGTAGCCCCACCAAACCAAC
CATCTCGTCCTAAGTGGCCACCTTGCTCAATAGTCCTCCAACGGTCAGGAATGGTATCCT
CTATCTCTGCAATGCCAGTGGCCATAC
■■Homology search results ■■ -
sp_hit_id P49140
Definition sp|P49140|SKI_CHICK Ski oncogene OS=Gallus gallus
Align length 54
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915045|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_H03.
         (327 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49140|SKI_CHICK Ski oncogene OS=Gallus gallus GN=SKI PE=3 SV=1     34   0.26 
sp|P78509|RELN_HUMAN Reelin OS=Homo sapiens GN=RELN PE=1 SV=2          31   2.2  
sp|P58751|RELN_RAT Reelin OS=Rattus norvegicus GN=Reln PE=2 SV=1       30   2.9  
sp|Q60841|RELN_MOUSE Reelin OS=Mus musculus GN=Reln PE=1 SV=2          30   2.9  
sp|Q0JMD4|P2C03_ORYSJ Probable protein phosphatase 2C 3 OS=Oryza...    30   3.8  
sp|Q9R0R1|TRFM_MOUSE Melanotransferrin OS=Mus musculus GN=Mfi2 P...    30   5.0  
sp|A1SLX8|CAAL2_NOCSJ Carboxylate-amine ligase Noca_3311 OS=Noca...    30   5.0  
sp|P08582|TRFM_HUMAN Melanotransferrin OS=Homo sapiens GN=MFI2 P...    29   8.5  
sp|Q5TJ57|FORE_DICDI Formin-E OS=Dictyostelium discoideum GN=for...    29   8.5  

>sp|P49140|SKI_CHICK Ski oncogene OS=Gallus gallus GN=SKI PE=3 SV=1
          Length = 750

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 156 IIQDSEYQIPKTGKQRVIKGLNVAPPNQPSRPKWPPCSIVLQRSGMVSSISAMP 317
           +I+DS +   K+ +  V   + +APP Q      PPC+ V+ RS    S +A P
Sbjct: 418 LIRDSSFYSYKSFENAVAPNVALAPPAQQKVVSNPPCATVVSRSSEPPSSAAQP 471


>sp|P78509|RELN_HUMAN Reelin OS=Homo sapiens GN=RELN PE=1 SV=2
          Length = 3460

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
 Frame = -3

Query: 301  EDTIPDRWRTIEQG------GHLGRDG--WFGGATLRPLITRCLPVLGI*YSESW 161
            E+  PD W ++E G      G L  D   +FGG+T+R  +T+ L + G  + + W
Sbjct: 2899 EEIKPDLWMSLEGGSTCTECGILAEDTALYFGGSTVRQAVTQDLDLRGAKFLQYW 2953


>sp|P58751|RELN_RAT Reelin OS=Rattus norvegicus GN=Reln PE=2 SV=1
          Length = 3462

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
 Frame = -3

Query: 301  EDTIPDRWRTIEQGGHLGRDG--------WFGGATLRPLITRCLPVLGI*YSESW 161
            E+  PD W ++E G      G        +FGG+T+R  IT+ L + G  + + W
Sbjct: 2901 EEIKPDLWMSLEGGSTCTECGILAENTALYFGGSTVRQAITQDLDLRGAKFLQYW 2955


>sp|Q60841|RELN_MOUSE Reelin OS=Mus musculus GN=Reln PE=1 SV=2
          Length = 3461

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
 Frame = -3

Query: 301  EDTIPDRWRTIEQGGHLGRDG--------WFGGATLRPLITRCLPVLGI*YSESW 161
            E+  PD W ++E G      G        +FGG+T+R  IT+ L + G  + + W
Sbjct: 2900 EEIKPDLWMSLEGGSTCTECGVLAENTALYFGGSTVRQAITQDLDLRGAKFLQYW 2954


>sp|Q0JMD4|P2C03_ORYSJ Probable protein phosphatase 2C 3 OS=Oryza
           sativa subsp. japonica GN=Os01g0513100 PE=2 SV=2
          Length = 485

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 304 IEDTIPDRWRTIEQGGHLGRDGWFGGATLRPLITRCLP 191
           +E+ + +R R    GG +GR    GGA + PL  RC P
Sbjct: 229 LEENVEERERVTASGGEVGRLSVVGGAEIGPL--RCWP 264


>sp|Q9R0R1|TRFM_MOUSE Melanotransferrin OS=Mus musculus GN=Mfi2 PE=2
           SV=1
          Length = 738

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -2

Query: 185 GDLIFRVLDDGKLYFDHESSS 123
           G LIF++L++G+L F HE SS
Sbjct: 289 GGLIFQLLNEGQLLFSHEDSS 309


>sp|A1SLX8|CAAL2_NOCSJ Carboxylate-amine ligase Noca_3311
           OS=Nocardioides sp. (strain BAA-499 / JS614)
           GN=Noca_3311 PE=3 SV=1
          Length = 369

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
 Frame = -2

Query: 317 WHCRDRGYHS*PLEDY*ARWPLRTRWLVWWGYIEAFDHSLLACFGDLIFRVL------DD 156
           W  RD GY S  ++    RWPL        G  E F  +  A + +L+ RVL      D 
Sbjct: 165 WQGRDTGYASFRIQAL-GRWPLS-------GPTELFGTA--AAYQELVERVLAAQVVLDQ 214

Query: 155 GKLYFDHESS 126
           G LYFD  +S
Sbjct: 215 GMLYFDARAS 224


>sp|P08582|TRFM_HUMAN Melanotransferrin OS=Homo sapiens GN=MFI2 PE=1
           SV=1
          Length = 738

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 185 GDLIFRVLDDGKLYFDHESSS 123
           G LIFR+L++G+  F HE SS
Sbjct: 289 GGLIFRLLNEGQRLFSHEGSS 309


>sp|Q5TJ57|FORE_DICDI Formin-E OS=Dictyostelium discoideum GN=forE
           PE=1 SV=1
          Length = 1561

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +3

Query: 159 IQDSEYQIPKTGKQRVIKGLNVAPPNQPSRPKWPPCSIVLQRSGMVSSISAMPVA 323
           I+D + +I    ++ V + + V   N    P  PP SI +Q S  VSS  + PV+
Sbjct: 193 IKDIKEEIKHVIREEVTEPIIVVENNNSPPPPPPPPSITVQSSSPVSSQISSPVS 247
tr_hit_id B8MBI1
Definition tr|B8MBI1|B8MBI1_9EURO Developmental regulatory protein WetA OS=Talaromyces stipitatus ATCC 10500
Align length 54
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915045|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_H03.
         (327 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8MBI1|B8MBI1_9EURO Developmental regulatory protein WetA OS=...    34   4.1  
tr|B4HDC0|B4HDC0_DROPE GL16030 OS=Drosophila persimilis GN=GL160...    33   5.4  
tr|A0JMI0|A0JMI0_DANRE LOC565118 protein (Fragment) OS=Danio rer...    33   9.2  

>tr|B8MBI1|B8MBI1_9EURO Developmental regulatory protein WetA
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_116350 PE=4
           SV=1
          Length = 595

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 128 SSHDQNITSHHPRL*ISDPQNRQ---ATSDQRPQCSPTKPTISS*VATLLNSPP 280
           +SH Q   SHHP +  S P ++Q   A   + P  SPT  T     A L NS P
Sbjct: 444 TSHQQPTFSHHPYVPTSQPAHQQQFIAQPSRTPSVSPTNMTSPKSRAALKNSTP 497


>tr|B4HDC0|B4HDC0_DROPE GL16030 OS=Drosophila persimilis GN=GL16030
           PE=4 SV=1
          Length = 424

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 203 SLLACFGDLIFRVLDDGKLYFDHESSSVMSLPWSCIKVVRWRGKHCSV 60
           SL ACF  L  + L + K Y +      M  PWS  + + WR + C++
Sbjct: 190 SLAACFSTLTLQALREMKHYIEPSHPQDMRTPWSLTRYI-WRTEACNI 236


>tr|A0JMI0|A0JMI0_DANRE LOC565118 protein (Fragment) OS=Danio rerio
           GN=LOC565118 PE=2 SV=1
          Length = 680

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 179 DPQNRQATSDQRPQCSPTKPTISS*VATLLNSPPTVRNGILYLCNASGH 325
           D QN Q TSDQ+ Q   +K  ISS + T+L  P +  N +    NA+ H
Sbjct: 68  DCQNMQRTSDQKSQAMESKGNISSVLQTIL--PISCTNSVRPEINAAAH 114