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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915049
Clone id YMU001_000065_H07
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000065_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGATGATCAACAGCTGAAAGAGACCGCAGATTGGGCCCTGGCAATCATCAGTCGTGTTC
TCTCTCGGTAGCTTCTGGGTTGACTGTGGAAGCCTCCCATATTACCTTCCTTGTAAGATT
GTTTGAATTGTTTGCATATGGGGTTTAATCCTCTCTGTCTCATTGTGGCTCATTGGAATA
TAGGTCCATGTGAGCAGTCCTATCCTATGCACTTAGCGTAGTCACTTATAGCATTGAAGC
TATAGTGCTGCCGTGTCGGATCCAGTCATTTGGTCTTTGCATATTGGTCAAAACCTGGTT
AGGGCTCTACCTGATACAGGCTGTCACTGATCTCTGGGCTATGCTGGAGAGGAGGGTCAT
GAGCTTACAACATGGCGTTGTGTCAGCTCTTGTTCAGAAGGCTCTGCATAGAGCCTTTTG
GCTATTTTTGTCTAGTGTTCACCCTTGGCTCATTGTTGTCTAGGGTGAAGATTTCAATAA
GAAACCAGATGAT
■■Homology search results ■■ -
sp_hit_id P24876
Definition sp|P24876|ATP6_ASCSU ATP synthase subunit a OS=Ascaris suum
Align length 137
Score (bit) 30.0
E-value 6.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915049|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_H07.
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24876|ATP6_ASCSU ATP synthase subunit a OS=Ascaris suum GN=A...    30   6.0  

>sp|P24876|ATP6_ASCSU ATP synthase subunit a OS=Ascaris suum GN=ATP6
           PE=3 SV=2
          Length = 199

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
 Frame = +2

Query: 59  SLSVASGLTVEASHITFLVRLFELFAYGV*SSLSHCGSLEYR---SM*AVLSYALSVVTY 229
           SL ++S ++V     TFLV L   F      S   CG +E+    +M A LS  L+ +T 
Sbjct: 47  SLPLSSVISV----FTFLVLLTCCFGGYFMYSFCPCGMIEFTFVYAMVAWLSTLLTFITS 102

Query: 230 SIEAIVLPCRIQSFGLCILVKTWLGLYLIQAVTDLWAMLERRVMSLQHGVVSALVQKALH 409
              +I +     SF     +KT+  + L++ V+++   L   V    + +V  ++   L+
Sbjct: 103 EKFSIYISKAGDSF-----LKTF-SMLLVELVSEVSRPLALTVRLTVNVLVGHVISMMLY 156

Query: 410 RAFWLFLSSVHPWLIVV 460
           +   L+L   + W++V+
Sbjct: 157 QLLELYLGIFYVWIVVL 173
tr_hit_id Q144T0
Definition tr|Q144T0|Q144T0_BURXL Cytochrome bd ubiquinol oxidase, subunit II OS=Burkholderia xenovorans (strain LB400)
Align length 46
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915049|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_H07.
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q144T0|Q144T0_BURXL Cytochrome bd ubiquinol oxidase, subunit ...    35   1.9  
tr|B2TFQ7|B2TFQ7_BURPP Cytochrome d ubiquinol oxidase, subunit I...    35   1.9  
tr|Q214I6|Q214I6_RHOPB RDD OS=Rhodopseudomonas palustris (strain...    34   3.3  
tr|Q39NF1|Q39NF1_BURS3 Cytochrome bd ubiquinol oxidase, subunit ...    33   9.5  
tr|Q0KAC1|Q0KAC1_RALEH Methylmalonyl-CoA mutase OS=Ralstonia eut...    33   9.5  
tr|B1KA68|B1KA68_BURCC Cytochrome d ubiquinol oxidase, subunit I...    33   9.5  
tr|B8DUR1|B8DUR1_BIFAN Putative membrane protein OS=Bifidobacter...    33   9.5  
tr|B2E8N8|B2E8N8_BIFAN Putative uncharacterized protein OS=Bifid...    33   9.5  

>tr|Q144T0|Q144T0_BURXL Cytochrome bd ubiquinol oxidase, subunit II
           OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_A0621
           PE=4 SV=1
          Length = 335

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 76  WVDCGSLPYYLPCKIV*IVCIWGLILSVSLWLIGI*VHVSSPILCT 213
           W   G+L ++LP  ++ IVC+WG+  S+ L       H ++P L T
Sbjct: 223 WFGSGNLGWFLPVPVLVIVCVWGIFRSLRL------RHEATPFLLT 262


>tr|B2TFQ7|B2TFQ7_BURPP Cytochrome d ubiquinol oxidase, subunit II
           OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
           GN=Bphyt_5725 PE=4 SV=1
          Length = 335

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 76  WVDCGSLPYYLPCKIV*IVCIWGLILSVSLWLIGI*VHVSSPILCT 213
           W   G L ++LP  I+ ++C+WG++ SV L       H + P L T
Sbjct: 223 WFGSGQLGWFLPVPILVVLCVWGILRSVRL------QHEAMPFLLT 262


>tr|Q214I6|Q214I6_RHOPB RDD OS=Rhodopseudomonas palustris (strain
           BisB18) GN=RPC_2650 PE=4 SV=1
          Length = 188

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
 Frame = +2

Query: 197 VLSYALSVVTYSIEAIVLPCRIQSFGLCILVKTWLGLYLIQAVTDLWAML---------- 346
           VL++ + +V  +I  I+    I  FG+  L   W   +L+   + +WA++          
Sbjct: 47  VLAFLIDLVLLAIPIILAVVFISVFGVFTLGLGWALFWLVSPASVIWALIYYGATLGGPY 106

Query: 347 ----ERRVMSLQ----HGVVSALVQKALHR-AFWLFLSSVHPWLIVV 460
                 RVM L+    +G  S  V  A+H   FW+ ++ + P++++V
Sbjct: 107 SATVGMRVMDLEMRTWYGEPSYFVMGAVHAILFWVSITMLSPFVLLV 153


>tr|Q39NF1|Q39NF1_BURS3 Cytochrome bd ubiquinol oxidase, subunit II
           OS=Burkholderia sp. (strain 383) GN=Bcep18194_C6969 PE=4
           SV=1
          Length = 335

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 76  WVDCGSLPYYLPCKIV*IVCIWGLILSVSLWLIGI*VHVSSPILCT 213
           W   G+L ++LP  I+ I C+WG+  +V         H ++P L T
Sbjct: 223 WFGSGNLGWFLPVPILVIACVWGIFHTVKR------AHEATPFLLT 262


>tr|Q0KAC1|Q0KAC1_RALEH Methylmalonyl-CoA mutase OS=Ralstonia
           eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier
           337) GN=sbm2 PE=4 SV=1
          Length = 692

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
 Frame = +2

Query: 269 FGLCILVKTWLGLYLIQAVTDLWAMLERRVMS---LQHGVVSAL----VQKALHRAFWLF 427
           FGLC +   W G YLI+++T       R V++    + G+++AL    VQ+ +H+     
Sbjct: 362 FGLCDVADPWAGSYLIESLTGRMVTEVRAVLAHIDAEGGILAALESGWVQRRIHQNALRT 421

Query: 428 LSSVHPWLIVV*GEDFNKKPDD 493
            + +     VV G +  ++PDD
Sbjct: 422 QARLDAREEVVVGVNRYQEPDD 443


>tr|B1KA68|B1KA68_BURCC Cytochrome d ubiquinol oxidase, subunit II
           OS=Burkholderia cenocepacia (strain MC0-3)
           GN=Bcenmc03_7067 PE=4 SV=1
          Length = 335

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 76  WVDCGSLPYYLPCKIV*IVCIWGLILSVSLWLIGI*VHVSSPILCT 213
           W   G+L ++LP  I+ I C+WG+  +V         H ++P L T
Sbjct: 223 WFGSGNLGWFLPVPILVIACVWGIFHTVKR------AHEATPFLLT 262


>tr|B8DUR1|B8DUR1_BIFAN Putative membrane protein OS=Bifidobacterium
           animalis subsp. lactis AD011 GN=BLA_1457 PE=4 SV=1
          Length = 121

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
 Frame = +2

Query: 233 IEAIVLPCRIQSFGLCILVKTWLGLYLIQAVT----DL--------WAMLERRVMSLQHG 376
           ++ + LP  + +FGL  LV  WL + L   +     D+        WA+L   +MSL  G
Sbjct: 54  VQMLALPFSVLTFGLLALVINWLFMELASWLAINLFDVGVTIGGFWWAVLGSLIMSLVSG 113

Query: 377 VVSALV 394
           +VSA V
Sbjct: 114 IVSAAV 119


>tr|B2E8N8|B2E8N8_BIFAN Putative uncharacterized protein
           OS=Bifidobacterium animalis subsp. lactis HN019
           GN=BIFLAC_02707 PE=4 SV=1
          Length = 121

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
 Frame = +2

Query: 233 IEAIVLPCRIQSFGLCILVKTWLGLYLIQAVT----DL--------WAMLERRVMSLQHG 376
           ++ + LP  + +FGL  LV  WL + L   +     D+        WA+L   +MSL  G
Sbjct: 54  VQMLALPFSVLTFGLLALVINWLFMELASWLAINLFDVGVTIGGFWWAVLGSLIMSLVSG 113

Query: 377 VVSALV 394
           +VSA V
Sbjct: 114 IVSAAV 119