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NBDC - LSDB Archive
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BP915050
Clone id YMU001_000065_H08
Library
Length 321
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000065_H08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCAGTTCATTTCGAAGAACAGATAACCAATGCTTGACAAGTGGGTGAGGAGGCACATAC
ACCAGAGTCAACTCTTCCCCGATCCTCTTTTCAAGAGGAGCTGCTTTCGGTATCCATCTA
GCAGTAATCTGTTCATCTTTGTGCTCGTGAGCTTCAGATAATGCATGTGTAAATCTCAGG
CAATGCATTGTCGGGCTCCATGCCATGATGCACCTAAAGCTGTTGAGGTTTGGAGAAGAT
GCCTTCTTGCCCAAGTCTAAAGATTATTGGAGATCATAGCCCCTCTGTCAGATGGCCAAA
CTTGTATCAATGATGAAAAAT
■■Homology search results ■■ -
sp_hit_id P93394
Definition sp|P93394|UPP_TOBAC Uracil phosphoribosyltransferase OS=Nicotiana tabacum
Align length 32
Score (bit) 45.1
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915050|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_H08.
         (321 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P93394|UPP_TOBAC Uracil phosphoribosyltransferase OS=Nicotian...    45   1e-04
sp|Q8YVB5|UPP_ANASP Uracil phosphoribosyltransferase OS=Anabaena...    39   0.008
sp|P72753|UPP_SYNY3 Uracil phosphoribosyltransferase OS=Synechoc...    37   0.023
sp|Q5MZF4|UPP_SYNP6 Uracil phosphoribosyltransferase OS=Synechoc...    35   0.12 
sp|Q31MH4|UPP_SYNE7 Uracil phosphoribosyltransferase OS=Synechoc...    35   0.12 
sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergil...    32   1.3  
sp|Q9PJJ6|UPP_CHLMU Uracil phosphoribosyltransferase OS=Chlamydi...    30   2.8  
sp|Q29IG6|PNO1_DROPS RNA-binding protein pno1 OS=Drosophila pseu...    30   4.8  
sp|Q1WBT4|ABC3H_PONPY DNA dC->dU-editing enzyme APOBEC-3H OS=Pon...    29   6.3  
sp|Q97H86|MRAY_CLOAB Phospho-N-acetylmuramoyl-pentapeptide-trans...    29   8.2  
sp|P31244|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces ...    29   8.2  

>sp|P93394|UPP_TOBAC Uracil phosphoribosyltransferase OS=Nicotiana
           tabacum GN=UPP PE=2 SV=1
          Length = 224

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = -2

Query: 101 APLEKRIGEELTLVYVPPHPLVKHWLSVLRNE 6
           A   K +     LV+VPPHPL+KHW+SVLRNE
Sbjct: 2   AAQNKAMSGNRMLVFVPPHPLIKHWVSVLRNE 33


>sp|Q8YVB5|UPP_ANASP Uracil phosphoribosyltransferase OS=Anabaena
          sp. (strain PCC 7120) GN=upp PE=3 SV=1
          Length = 216

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -2

Query: 62 VYVPPHPLVKHWLSVLRN 9
          VYVPPHPL+KHWL+V R+
Sbjct: 7  VYVPPHPLIKHWLAVARD 24


>sp|P72753|UPP_SYNY3 Uracil phosphoribosyltransferase
          OS=Synechocystis sp. (strain PCC 6803) GN=upp PE=3 SV=1
          Length = 216

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = -2

Query: 62 VYVPPHPLVKHWLSVLRNE 6
          VYVP HPL+KHWL V R+E
Sbjct: 7  VYVPEHPLIKHWLGVARDE 25


>sp|Q5MZF4|UPP_SYNP6 Uracil phosphoribosyltransferase
          OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
          SAUG 1402/1) GN=upp PE=3 SV=1
          Length = 217

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -2

Query: 62 VYVPPHPLVKHWLSVLRN 9
          ++VPPHPL++HWL + R+
Sbjct: 7  IFVPPHPLIRHWLGIARD 24


>sp|Q31MH4|UPP_SYNE7 Uracil phosphoribosyltransferase
          OS=Synechococcus elongatus (strain PCC 7942) GN=upp
          PE=3 SV=1
          Length = 217

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -2

Query: 62 VYVPPHPLVKHWLSVLRN 9
          ++VPPHPL++HWL + R+
Sbjct: 7  IFVPPHPLIRHWLGIARD 24


>sp|A5AA68|DBP8_ASPNC ATP-dependent RNA helicase dbp8 OS=Aspergillus
           niger (strain CBS 513.88 / FGSC A1513) GN=dbp8 PE=3 SV=1
          Length = 522

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 161 LSEAHEHKDEQITARWIPKAAPLEKRIGEELTLVYVPPHPL 39
           + E+HE  D ++    +   AP  +R+ E  T  YV P PL
Sbjct: 11  VDESHESSDSEVEQTELQSRAPKRRRLSESSTDSYVAPAPL 51


>sp|Q9PJJ6|UPP_CHLMU Uracil phosphoribosyltransferase OS=Chlamydia
           muridarum GN=upp PE=3 SV=1
          Length = 303

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 104 AAPLEKRIGEELTLVYVPPHPLVKHWLSVLRNE 6
           + P +    + L  VYV  HPL++H  S+LRN+
Sbjct: 81  STPTDSLSSKPLAAVYVLSHPLIQHKASLLRNK 113


>sp|Q29IG6|PNO1_DROPS RNA-binding protein pno1 OS=Drosophila
           pseudoobscura pseudoobscura GN=l(1)G0004 PE=3 SV=1
          Length = 238

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -2

Query: 104 AAPLEKRIGEELTLVYVPPH---PLVKHWLSV 18
           A P  KRI  EL  V VPPH    L +HW+ +
Sbjct: 50  APPRAKRIKSELRKVSVPPHRYSSLKEHWMKI 81


>sp|Q1WBT4|ABC3H_PONPY DNA dC->dU-editing enzyme APOBEC-3H OS=Pongo
           pygmaeus GN=APOBEC3H PE=2 SV=1
          Length = 211

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 212 CIMAWSPTMHCLRFTHALSEAHEHKDEQITA 120
           C + WSP   C+R   A  +AH+H + +I A
Sbjct: 78  CYLTWSPCPSCVRELVAFIKAHDHLNLRIFA 108


>sp|Q97H86|MRAY_CLOAB
           Phospho-N-acetylmuramoyl-pentapeptide-transferase
           OS=Clostridium acetobutylicum GN=mraY PE=3 SV=1
          Length = 317

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 175 LRQCIVGLHAMMHLKLLRFGEDAFLPKSKDYWRS*PLCQMAKLV 306
           L Q IV   A+ +   +RFG D F+P  K  W   P+  MA +V
Sbjct: 113 LLQIIVSA-AISYYAYIRFGSDTFIPFLKITWTLPPIVYMAAVV 155
tr_hit_id Q9M336
Definition tr|Q9M336|Q9M336_ARATH Uracil phosphoribosyltransferase-like protein OS=Arabidopsis thaliana
Align length 41
Score (bit) 47.0
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915050|Adiantum capillus-veneris mRNA, clone:
YMU001_000065_H08.
         (321 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9M336|Q9M336_ARATH Uracil phosphoribosyltransferase-like pro...    47   5e-04
tr|Q8LFM4|Q8LFM4_ARATH Uracil phosphoribosyltransferase-like pro...    47   5e-04
tr|A9NPV6|A9NPV6_PICSI Putative uncharacterized protein OS=Picea...    47   5e-04
tr|A7PNT9|A7PNT9_VITVI Chromosome chr8 scaffold_23, whole genome...    47   6e-04
tr|Q3EAK0|Q3EAK0_ARATH Uncharacterized protein At3g53900.1 OS=Ar...    46   8e-04
tr|Q60EM2|Q60EM2_ORYSJ Os05g0455700 protein OS=Oryza sativa subs...    45   0.002
tr|B8AYT9|B8AYT9_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.002
tr|B4FR28|B4FR28_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.002
tr|A3B4Q4|A3B4Q4_ORYSJ Putative uncharacterized protein OS=Oryza...    45   0.002
tr|A8JC08|A8JC08_CHLRE Predicted protein OS=Chlamydomonas reinha...    44   0.005
tr|A9SWZ6|A9SWZ6_PHYPA Predicted protein (Fragment) OS=Physcomit...    42   0.015
tr|B2J8W3|B2J8W3_NOSP7 Uracil phosphoribosyltransferase OS=Nosto...    41   0.026
tr|A0YW17|A0YW17_9CYAN Uracil phosphoribosyltransferase OS=Lyngb...    40   0.044
tr|A2BW55|A2BW55_PROM5 Putative uracil phosphoribosyltransferase...    40   0.058
tr|Q3M8G7|Q3M8G7_ANAVT Uracil phosphoribosyltransferase OS=Anaba...    39   0.13 
tr|Q2JJ55|Q2JJ55_SYNJB Uracil phosphoribosyltransferase OS=Synec...    39   0.13 
tr|Q113A3|Q113A3_TRIEI Uracil phosphoribosyltransferase OS=Trich...    39   0.13 
tr|B0C7X6|B0C7X6_ACAM1 Uracil phosphoribosyltransferase OS=Acary...    39   0.13 
tr|B8HYJ3|B8HYJ3_9CHRO Uracil phosphoribosyltransferase OS=Cyano...    39   0.13 
tr|A0ZIA8|A0ZIA8_NODSP Uracil phosphoribosyltransferase OS=Nodul...    39   0.13 
tr|Q7V1S9|Q7V1S9_PROMP Putative uracil phosphoribosyltransferase...    39   0.17 
tr|Q31BA1|Q31BA1_PROM9 Putative uracil phosphoribosyltransferase...    39   0.17 
tr|A8G4F4|A8G4F4_PROM2 Putative uracil phosphoribosyltransferase...    39   0.17 
tr|A3PCI4|A3PCI4_PROM0 Putative uracil phosphoribosyltransferase...    39   0.17 
tr|A2BQR1|A2BQR1_PROMS Putative uracil phosphoribosyltransferase...    39   0.17 
tr|Q1PK15|Q1PK15_PROMA Putative uracil phosphoribosyltransferase...    39   0.17 
tr|B5W285|B5W285_SPIMA Uracil phosphoribosyltransferase OS=Arthr...    39   0.17 
tr|B4W5H4|B4W5H4_9CYAN Uracil phosphoribosyltransferase (Fragmen...    39   0.17 
tr|O24621|O24621_ARATH Sigma factor SigC OS=Arabidopsis thaliana...    38   0.22 
tr|O22058|O22058_ARATH Plastid RNA polymerase sigma-subunit OS=A...    38   0.22 

>tr|Q9M336|Q9M336_ARATH Uracil phosphoribosyltransferase-like
           protein OS=Arabidopsis thaliana GN=F5K20_200 PE=2 SV=1
          Length = 296

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 24/41 (58%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -2

Query: 125 TARWIPKAAPLEKRI-GEELTLVYVPPHPLVKHWLSVLRNE 6
           T R   K A  E  I G    LV+VPPHPL+KHW+SVLRNE
Sbjct: 59  TIRARTKMAASEASINGSNRMLVFVPPHPLIKHWISVLRNE 99


>tr|Q8LFM4|Q8LFM4_ARATH Uracil phosphoribosyltransferase-like
           protein OS=Arabidopsis thaliana PE=2 SV=1
          Length = 296

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 24/41 (58%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -2

Query: 125 TARWIPKAAPLEKRI-GEELTLVYVPPHPLVKHWLSVLRNE 6
           T R   K A  E  I G    LV+VPPHPL+KHW+SVLRNE
Sbjct: 59  TIRARTKMAASEASINGSNRMLVFVPPHPLIKHWISVLRNE 99


>tr|A9NPV6|A9NPV6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 150

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = -2

Query: 89  KRIGEELTLVYVPPHPLVKHWLSVLRNE 6
           + +  E  LV+VPPHPL+KHW+SVLRNE
Sbjct: 67  RNVAGERMLVFVPPHPLIKHWISVLRNE 94


>tr|A7PNT9|A7PNT9_VITVI Chromosome chr8 scaffold_23, whole genome
          shotgun sequence OS=Vitis vinifera GN=GSVIVT00021387001
          PE=4 SV=1
          Length = 227

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = -2

Query: 89 KRIGEELTLVYVPPHPLVKHWLSVLRNE 6
          + + +E  LV+VPPHPL+KHW+SVLRNE
Sbjct: 9  RSLPDEKMLVFVPPHPLIKHWVSVLRNE 36


>tr|Q3EAK0|Q3EAK0_ARATH Uncharacterized protein At3g53900.1
          OS=Arabidopsis thaliana GN=At3g53900 PE=4 SV=1
          Length = 231

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = -2

Query: 80 GEELTLVYVPPHPLVKHWLSVLRNE 6
          G    LV+VPPHPL+KHW+SVLRNE
Sbjct: 10 GSNRMLVFVPPHPLIKHWISVLRNE 34


>tr|Q60EM2|Q60EM2_ORYSJ Os05g0455700 protein OS=Oryza sativa subsp.
           japonica GN=OJ1651_D06.11 PE=2 SV=1
          Length = 301

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 17/20 (85%), Positives = 20/20 (100%)
 Frame = -2

Query: 65  LVYVPPHPLVKHWLSVLRNE 6
           LV+VPPHPL+KHW+SVLRNE
Sbjct: 91  LVFVPPHPLIKHWVSVLRNE 110


>tr|B8AYT9|B8AYT9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_20192 PE=4 SV=1
          Length = 310

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 17/20 (85%), Positives = 20/20 (100%)
 Frame = -2

Query: 65  LVYVPPHPLVKHWLSVLRNE 6
           LV+VPPHPL+KHW+SVLRNE
Sbjct: 91  LVFVPPHPLIKHWVSVLRNE 110


>tr|B4FR28|B4FR28_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 290

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 17/20 (85%), Positives = 20/20 (100%)
 Frame = -2

Query: 65  LVYVPPHPLVKHWLSVLRNE 6
           LV+VPPHPL+KHW+SVLRNE
Sbjct: 80  LVFVPPHPLIKHWVSVLRNE 99


>tr|A3B4Q4|A3B4Q4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018026 PE=4 SV=1
          Length = 301

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 17/20 (85%), Positives = 20/20 (100%)
 Frame = -2

Query: 65  LVYVPPHPLVKHWLSVLRNE 6
           LV+VPPHPL+KHW+SVLRNE
Sbjct: 91  LVFVPPHPLIKHWVSVLRNE 110


>tr|A8JC08|A8JC08_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_132204 PE=4 SV=1
          Length = 268

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -2

Query: 104 AAPLEKRIGEELTLVYVPPHPLVKHWLSVLRN 9
           AAP  K    +  LVY PPHPL+KHWL++LR+
Sbjct: 38  AAPKPKPKAPQQMLVYSPPHPLIKHWLAILRS 69