BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915057|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_A04.
         (521 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5DZT7|DBP10_LODEL ATP-dependent RNA helicase DBP10 OS=Lodder...    32   1.8  
sp|Q80ZJ7|SNX32_MOUSE Sorting nexin-32 OS=Mus musculus GN=Snx32 ...    32   2.4  
sp|Q86XE0|SNX32_HUMAN Sorting nexin-32 OS=Homo sapiens GN=SNX32 ...    31   4.0  
sp|O04420|URIC_ARATH Uricase OS=Arabidopsis thaliana GN=At2g2623...    30   6.9  
sp|Q5RAD5|RTF1_PONAB RNA polymerase-associated protein RTF1 homo...    30   6.9  
sp|Q92541|RTF1_HUMAN RNA polymerase-associated protein RTF1 homo...    30   6.9  

>sp|A5DZT7|DBP10_LODEL ATP-dependent RNA helicase DBP10
           OS=Lodderomyces elongisporus GN=DBP10 PE=3 SV=1
          Length = 948

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = -1

Query: 218 QKLEALKDEFLVNLELFNRLRRENVLE-GQIAVKKNAKIAEKSAFVQKMRQLAHVRRLAR 42
           + LE +KD+FL  L+  NR  +E V E  +  VK+N  +AE     ++ RQLA ++R A+
Sbjct: 645 ENLEKMKDDFLAKLQ--NRNVKETVFELKKKGVKENDSLAE--FMHRRRRQLAPIQRKAQ 700

Query: 41  K 39
           +
Sbjct: 701 E 701


>sp|Q80ZJ7|SNX32_MOUSE Sorting nexin-32 OS=Mus musculus GN=Snx32
           PE=2 SV=1
          Length = 404

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = -1

Query: 221 SQKLEALKDEFLVNLELFNRLRRENVLEGQIAVKKNAKIAEKSAFVQKMRQLA 63
           +Q++  LK  FL   ELF RLR+   LEG++A  ++ K+++   +  +  Q A
Sbjct: 255 TQEVNQLKRSFLKLAELFERLRK---LEGRVASDEDLKLSDMLRYYMRDSQAA 304


>sp|Q86XE0|SNX32_HUMAN Sorting nexin-32 OS=Homo sapiens GN=SNX32
           PE=2 SV=1
          Length = 403

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 17/53 (32%), Positives = 31/53 (58%)
 Frame = -1

Query: 221 SQKLEALKDEFLVNLELFNRLRRENVLEGQIAVKKNAKIAEKSAFVQKMRQLA 63
           +Q++  L+  FL   ELF RLR+   LEG++A  ++ K+++   +  +  Q A
Sbjct: 254 TQEVNQLRTSFLKLAELFERLRK---LEGRVASDEDLKLSDMLRYYMRDSQAA 303


>sp|O04420|URIC_ARATH Uricase OS=Arabidopsis thaliana GN=At2g26230
           PE=1 SV=2
          Length = 309

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 461 RYWKVFTEGSRKLL-WTLVIKLLQMLGMLSSTRLDSLTDYVATCTVTTKM*RAVRQC 294
           R W+   +GS   + W + I LL     LSS RLD  +D VAT T+   +    ++C
Sbjct: 23  RVWRHAHDGSHHFVEWNVSISLLSHC--LSSYRLDDNSDIVATDTIKNTVYVKAKEC 77


>sp|Q5RAD5|RTF1_PONAB RNA polymerase-associated protein RTF1 homolog
           OS=Pongo abelii GN=RTF1 PE=2 SV=1
          Length = 630

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 176 ELFNRLRRENVLEGQIAVKKNAKIAEKSAFVQKMRQ 69
           ELFNR+ +  VL+ +  +KK  K A+K    +K ++
Sbjct: 167 ELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKK 202


>sp|Q92541|RTF1_HUMAN RNA polymerase-associated protein RTF1 homolog
           OS=Homo sapiens GN=RTF1 PE=1 SV=3
          Length = 670

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 176 ELFNRLRRENVLEGQIAVKKNAKIAEKSAFVQKMRQ 69
           ELFNR+ +  VL+ +  +KK  K A+K    +K ++
Sbjct: 167 ELFNRIEKREVLKRRFEIKKKLKTAKKKEKKEKKKK 202

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915057|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_A04.
         (521 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******