BP915058
Clone id YMU001_000066_A05
Library
Length 552
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ACAGTAGGCTGTTTGTTATTGAGGACAGCAGCCTCAACCGAAGCTCCCATGGAGGTGATG
CCCGCGCACCTGGTTGGCCTGCCCTTTGAGGGACCCTTCGACTAGAAGCGGATGCGATAT
TGGGGTACGTCAGATGCACGGGAGAAGCTCTGGAGTCAGGTTTTAACATTGGAACTTTGT
TAGCAGGGTGGATTGTTAGTGGAAACTGGCCATTTTTGGTGGAATGTTGAAGACAGCAGG
GCATAGAAATTGTCAGGAGGGAGATAGGCATTTTTTTGTTGATGATCTGGATGGTAACAA
ACATGAAGTTTTCTCTTATCAATGTTGCTGATGAGAAGGTGTATCCGAGCTTGGATATAT
TTATGTTTCTATATTGAAGCATGGGACCTAGCAACTCTTCACTGGATTGGTTTTCAACGA
TGAGTGCCAGGGCTGTGGAAGTTTTGAAGTCATTGCTGTTATGGAGTAGGCAATGTGATG
GCCATGGTAATACAATCTATAGAATTATAGACTTGTTATTTTGTAATGTCCTAATCTTAT
GGGATGAGTATG
■■Homology search results ■■ -
sp_hit_id P25439
Definition sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster
Align length 59
Score (bit) 30.8
E-value 0.89
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915058|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_A05.
(552 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila mel... 31 0.89
sp|Q2URI8|NPL4_ASPOR Nuclear protein localization protein 4 OS=A... 33 0.92
sp|A2Q8R9|NPL4_ASPNC Nuclear protein localization protein 4 OS=A... 32 2.0
sp|Q31JS3|RECF_THICR DNA replication and repair protein recF OS=... 31 3.5
sp|A6R538|NPL4_AJECN Nuclear protein localization protein 4 OS=A... 31 3.5
sp|Q1DY54|NPL4_COCIM Nuclear protein localization protein 4 OS=C... 31 4.6
sp|A1L020|MEX3A_HUMAN RNA-binding protein MEX3A OS=Homo sapiens ... 31 4.6
sp|Q8WY50|PLAC4_HUMAN Placenta-specific protein 4 OS=Homo sapien... 30 6.0
sp|P34358|CED7_CAEEL ABC transporter ced-7 OS=Caenorhabditis ele... 30 6.0
sp|Q00131|VG28_ICHV1 Uncharacterized gene 28 protein OS=Ictaluri... 30 7.8

>sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila
melanogaster GN=brm PE=1 SV=2
Length = 1638

Score = 30.8 bits (68), Expect(2) = 0.89
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -3

Query: 229 QHSTKNGQFPLTIHPANKVPMLKPDSRASPVHLTYPNIASASSRRVPQRAGQPGARASP 53
QH NG PL++ P+ P++ V T P + S +VPQ G P + P
Sbjct: 326 QHQLPNGGKPLSMGPSGGQPLIPSSPMQPQVRGTLPGMPPGS--QVPQPGGGPQRQVPP 382



Score = 20.4 bits (41), Expect(2) = 0.89
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2

Query: 314 RKLHVCYHPDHQQKNAYLPP 255
+K+ V P H Q+ LPP
Sbjct: 274 QKMQVAPPPPHMQQGQPLPP 293


>sp|Q2URI8|NPL4_ASPOR Nuclear protein localization protein 4
OS=Aspergillus oryzae GN=npl4 PE=3 SV=1
Length = 652

Score = 33.1 bits (74), Expect = 0.92
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Frame = -3

Query: 247 SMPCCLQHSTKNGQFPLTIHPANKVPMLK--------PDSRASPVHLTYPNIASASSRRV 92
S P L+ +NGQF LT+ P P LK PD+ S ++L+ I + R+
Sbjct: 3 SRPIVLRFEGRNGQFRLTVSPQELFPSLKQKILEHLPPDTEPSSINLSNKPIGTGGDERL 62


>sp|A2Q8R9|NPL4_ASPNC Nuclear protein localization protein 4
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=npl4 PE=3 SV=1
Length = 654

Score = 32.0 bits (71), Expect = 2.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3

Query: 247 SMPCCLQHSTKNGQFPLTIHPANKVPMLKP 158
S P L+ ++NGQF LT++P + P L+P
Sbjct: 3 SRPIVLRFESRNGQFRLTVNPQDLFPSLQP 32


>sp|Q31JS3|RECF_THICR DNA replication and repair protein recF
OS=Thiomicrospira crunogena (strain XCL-2) GN=recF PE=3
SV=1
Length = 362

Score = 31.2 bits (69), Expect = 3.5
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = -3

Query: 466 LHNSNDFKTSTALALIVENQSSEELLGPMLQYRNINISKLGYTFSSATLIRENFMFVTIQ 287
L + F+T+ LI +NQS L G + + I+ L T TL + + T
Sbjct: 47 LASGRSFRTAKPHQLIQQNQSELVLFGTLTEADRIHKIGLARTSDKVTLKIDGELAKTQA 106

Query: 286 IINKKMPISLLT 251
++ K+P+ LLT
Sbjct: 107 DMSAKLPVQLLT 118


>sp|A6R538|NPL4_AJECN Nuclear protein localization protein 4
OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=NPL4
PE=3 SV=1
Length = 642

Score = 31.2 bits (69), Expect = 3.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3

Query: 241 PCCLQHSTKNGQFPLTIHPANKVPMLKP 158
P L+ ++NGQF LT++P ++ P L P
Sbjct: 6 PILLRFESRNGQFRLTVNPTDEFPSLLP 33


>sp|Q1DY54|NPL4_COCIM Nuclear protein localization protein 4
OS=Coccidioides immitis GN=NPL4 PE=3 SV=1
Length = 657

Score = 30.8 bits (68), Expect = 4.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3

Query: 241 PCCLQHSTKNGQFPLTIHPANKVPMLKP 158
P L+ ++NGQF LT+ PA P L P
Sbjct: 6 PLILRFESRNGQFRLTVEPAELFPALLP 33


>sp|A1L020|MEX3A_HUMAN RNA-binding protein MEX3A OS=Homo sapiens
GN=MEX3A PE=1 SV=1
Length = 520

Score = 30.8 bits (68), Expect = 4.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3

Query: 172 PMLKPDSRASPVHLTYPNIASASSRRVPQRAGQPGARASP 53
P+ A+P + + + +S+SS RAG PGA SP
Sbjct: 390 PLWAGQENATPTSVLFSSASSSSSSSAKARAGPPGAHRSP 429


>sp|Q8WY50|PLAC4_HUMAN Placenta-specific protein 4 OS=Homo sapiens
GN=PLAC4 PE=2 SV=2
Length = 150

Score = 30.4 bits (67), Expect = 6.0
Identities = 28/85 (32%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Frame = -3

Query: 262 SLLTISMPCCLQHSTKNGQFPLTIHPANKVPMLKPDSRASPVHLTYPNIASAS---SRRV 92
SLLT+ L H P T H A P L D+ P LT+P + S
Sbjct: 31 SLLTLDT---LTHPRHRHSSPWTPHSAPWTPSLTLDTFTHPDTLTHPGHPHSPWIPSLLT 87

Query: 91 PQRAGQPGARASPPWELRLRLLSSI 17
PG S PW L L L SI
Sbjct: 88 LDTLTHPGYPHSSPWTLSLTLTPSI 112


>sp|P34358|CED7_CAEEL ABC transporter ced-7 OS=Caenorhabditis
elegans GN=ced-7 PE=1 SV=6
Length = 1704

Score = 30.4 bits (67), Expect = 6.0
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = -3

Query: 439 STALALIVENQSSEELLGPMLQYRNINISKLGYTFSSATLIRENFMFVTIQIINKKMPIS 260
S L L V+N+SSEE L +L RN ++ L TF + +F + + NKK+
Sbjct: 117 SAKLKLSVKNESSEEQLLTVL--RN-DLPMLNETFCAINSYAAGVVFDEVDVTNKKLNYR 173

Query: 259 LLTISMPCCLQHSTKNGQFP 200
+L P H T+ P
Sbjct: 174 ILLGKTPEETWHLTETSYNP 193


>sp|Q00131|VG28_ICHV1 Uncharacterized gene 28 protein OS=Ictalurid
herpesvirus 1 GN=28 PE=4 SV=1
Length = 590

Score = 30.0 bits (66), Expect = 7.8
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3

Query: 223 STKNGQFPLTIHPANKV-PMLKPDSRASPVHLTYPNIASASSRRVPQRAGQPGARASPP 50
+TK GQ T+ NKV L S A P L+ P A+ +PQ +P A PP
Sbjct: 501 TTKIGQVSDTVEKLNKVIETLLTQSSAQPAPLSTPAQAAPVQPSLPQPVPEPLAPQEPP 559


tr_hit_id A6RF23
Definition tr|A6RF23|A6RF23_AJECN Predicted protein OS=Ajellomyces capsulata (strain NAm1 / WU24)
Align length 80
Score (bit) 35.4
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915058|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_A05.
(552 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6RF23|A6RF23_AJECN Predicted protein OS=Ajellomyces capsulat... 35 2.0
tr|B4Q4A1|B4Q4A1_DROSI GD23855 OS=Drosophila simulans GN=GD23855... 34 4.5
tr|B8MYC5|B8MYC5_ASPFL Endoplasmic reticulum and nuclear membran... 34 4.5
tr|B0CYK8|B0CYK8_LACBS Predicted protein OS=Laccaria bicolor (st... 34 4.5
tr|A1IIE1|A1IIE1_PHACA Aryl hydrocarbon receptor nuclear translo... 34 5.9
tr|Q1Z7H3|Q1Z7H3_PHOPR Outer membrane protein OmpW OS=Photobacte... 34 5.9
tr|A3SAJ6|A3SAJ6_9RHOB Alpha/beta hydrolase OS=Sulfitobacter sp.... 34 5.9
tr|Q11Y01|Q11Y01_CYTH3 Putative uncharacterized protein OS=Cytop... 33 7.7
tr|B8BAR1|B8BAR1_ORYSI Putative uncharacterized protein OS=Oryza... 33 7.7
tr|Q3S4K4|Q3S4K4_9CORO Spike glycoprotein S1 subunit (Fragment) ... 33 10.0
tr|A8KYD3|A8KYD3_FRASN Short-chain dehydrogenase/reductase SDR O... 33 10.0
tr|A3SVX3|A3SVX3_9RHOB Predicted hydrolase or acyltransferase (A... 33 10.0
tr|Q5N9D4|Q5N9D4_ORYSJ Putative uncharacterized protein P0505D12... 33 10.0

>tr|A6RF23|A6RF23_AJECN Predicted protein OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=HCAG_08238 PE=4 SV=1
Length = 700

Score = 35.4 bits (80), Expect = 2.0
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Frame = -3

Query: 268 PISLLTISMPCCL------QHSTKNGQF---PLTIHPANKVPMLKPDSRASPVHLTYPNI 116
PI+ TI+ P L QH + F PL H ++ P +P + SP +T P +
Sbjct: 189 PINRSTIAAPRALTFHQLQQHHHYHNHFNSGPLQSHSSDSNP--RPQTSTSPRSVTPPTV 246

Query: 115 ASASSRRVPQRAGQPGARAS 56
ASA++ + Q + QP AS
Sbjct: 247 ASATTAYITQSSSQPTIAAS 266


>tr|B4Q4A1|B4Q4A1_DROSI GD23855 OS=Drosophila simulans GN=GD23855
PE=4 SV=1
Length = 1095

Score = 34.3 bits (77), Expect = 4.5
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = -3

Query: 439 STALALIVENQSSEELLGPMLQYRNINISKLGYTFSSATLIRENFMFVTIQIINKKMPIS 260
+T L +++S + + Y I+I+ LG + S ++R M ++ KKMP+
Sbjct: 481 TTYLLTAAPSRNSVRSVDAVHSYAEIDINALGASRKSP-ILRPTLMSDELRKEFKKMPVG 539

Query: 259 LLTISMPCCLQHSTK 215
I PCC HS++
Sbjct: 540 GFNIRSPCCRDHSSE 554


>tr|B8MYC5|B8MYC5_ASPFL Endoplasmic reticulum and nuclear membrane
proteinc Npl4, putative OS=Aspergillus flavus NRRL3357
GN=AFLA_080620 PE=4 SV=1
Length = 603

Score = 34.3 bits (77), Expect = 4.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Frame = -3

Query: 247 SMPCCLQHSTKNGQFPLTIHPANKVPMLK--------PDSRASPVHLTYPNIASASSRRV 92
S P L+ ++NGQF LT+ P P LK PD+ S ++L+ I + R+
Sbjct: 3 SRPIVLRFESRNGQFRLTVSPQELFPSLKQKILEHLPPDTEPSSINLSNKPIGTGGDERL 62


>tr|B0CYK8|B0CYK8_LACBS Predicted protein OS=Laccaria bicolor
(strain S238N-H82) GN=LACBIDRAFT_311906 PE=4 SV=1
Length = 386

Score = 34.3 bits (77), Expect = 4.5
Identities = 23/91 (25%), Positives = 41/91 (45%)
Frame = -3

Query: 283 INKKMPISLLTISMPCCLQHSTKNGQFPLTIHPANKVPMLKPDSRASPVHLTYPNIASAS 104
+ ++P++ + + LQ+ T P +++PM P S A PV P +S
Sbjct: 272 LRNQIPMASMPSPLSSSLQYQTPLASMPPPTSSPSRMPMSSPSSTAVPVVSMSPPPSSPL 331

Query: 103 SRRVPQRAGQPGARASPPWELRLRLLSSITN 11
R+P ASPP+ +R+ S +T+
Sbjct: 332 QNRIPM--------ASPPFS-SVRMTSPVTH 353


>tr|A1IIE1|A1IIE1_PHACA Aryl hydrocarbon receptor nuclear
translocator 1 OS=Phalacrocorax carbo GN=arnt 1 PE=2
SV=1
Length = 807

Score = 33.9 bits (76), Expect = 5.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3

Query: 187 PANKVPMLKPDSRASPVHLTYPNIASASSRRVPQRAGQP 71
P++ PM P S ASP YPN+AS + P+ A P
Sbjct: 697 PSSFSPMAAPGSTASPTGAAYPNLASRGTGFTPEAAQTP 735


>tr|Q1Z7H3|Q1Z7H3_PHOPR Outer membrane protein OmpW
OS=Photobacterium profundum 3TCK GN=P3TCK_15055 PE=4
SV=1
Length = 212

Score = 33.9 bits (76), Expect = 5.9
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = -3

Query: 469 LLHNSNDFKTSTALALIVENQSSEELLGPMLQYRNINISKLGYTFSSATLIRENFMFVTI 290
L H DF +A +V N+SS+++LG + +++ + ++LG TF +I +N F +
Sbjct: 21 LAHKKGDFLVRAGIASVVPNESSDDVLG-LGEFKIDSNTQLGLTF--GYMITDNISFEVL 77

Query: 289 QIINKKMPISL 257
K +SL
Sbjct: 78 AATPFKHKVSL 88


>tr|A3SAJ6|A3SAJ6_9RHOB Alpha/beta hydrolase OS=Sulfitobacter sp.
EE-36 GN=EE36_14912 PE=4 SV=1
Length = 320

Score = 33.9 bits (76), Expect = 5.9
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = -3

Query: 277 KKMPISLLTISMPCCLQHSTKNGQFPLTIHPANKVPMLK-------PDSRASPVHLTYPN 119
KKM T++MP L H T + PL +H A P L P P H+T P+
Sbjct: 246 KKMVPKYDTLTMPVELIHGTADTIVPLDVHAAIATPQLPDAVLTTLPGIGHMPQHVTQPD 305

Query: 118 IASASSRRVPQRAG 77
+ +A R RAG
Sbjct: 306 VIAAID-RAATRAG 318


>tr|Q11Y01|Q11Y01_CYTH3 Putative uncharacterized protein
OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
9469) GN=CHU_0425 PE=4 SV=1
Length = 158

Score = 33.5 bits (75), Expect = 7.7
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -3

Query: 385 PMLQYRNINISKLGYTFSSATLIRENFMFVTIQIINKKMPISLLTISMPCCLQHSTKNGQ 206
P + + + + Y++S + M +I INKK+ + L+ C KN
Sbjct: 70 PTVNFNKYLLLNVTYSYSGCEQKIDRKMLYSIDHINKKLTLYLIVYEKGVCRPSFYKNDI 129

Query: 205 FPLTIHP-ANKVPMLKPDSRASPVHL 131
FP+ + P + ++ + KPD +PV +
Sbjct: 130 FPIPVIPDSYRIEIHKPDK--APVEI 153


>tr|B8BAR1|B8BAR1_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_29206 PE=4 SV=1
Length = 819

Score = 33.5 bits (75), Expect = 7.7
Identities = 21/63 (33%), Positives = 25/63 (39%)
Frame = -3

Query: 238 CCLQHSTKNGQFPLTIHPANKVPMLKPDSRASPVHLTYPNIASASSRRVPQRAGQPGARA 59
C + S + P T NK P P R P H P AS P+R+ P R
Sbjct: 558 CIILWSKADVVIPGTPAATNKPPSPPPSPRDPPDHDDSPGAPDASPSPPPKRSPSPPPRR 617

Query: 58 SPP 50
SPP
Sbjct: 618 SPP 620


>tr|Q3S4K4|Q3S4K4_9CORO Spike glycoprotein S1 subunit (Fragment)
OS=Infectious bronchitis virus GN=S1 PE=4 SV=1
Length = 539

Score = 33.1 bits (74), Expect = 10.0
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = -3

Query: 448 FKTSTALALIVENQSSEELLGPMLQYRNINISKLGYTFSSATLIRENFMFVTIQIINKKM 269
F TA +I+ + S + LL QY N S Y F+++TL+RENF+ +N +
Sbjct: 212 FVNGTAQDVILCDNSPKGLLA--CQYNTGNFSDGFYPFTNSTLVRENFIVYRESSVNTTL 269

Query: 268 PISLLTIS 245
++ T +
Sbjct: 270 ALTNFTFT 277