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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915059
Clone id YMU001_000066_A06
Library
Length 570
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGTTTTGTAAATGATCAAACATATATTCAATCCTAATCATTAGTCATGATACAGGACAA
GCTGATACAAACCATGACTGCGAACCCTTGTTCGGATAATGCAATCCAATAACATGTGAA
GGCTCACACGCTACACCTTATCATAAAAATTCTCTCTCTATTTTCCATCCATACGCTAGC
AGATGTGATAGCTTTCAAAGCAAAGAACACTCTTATTCATGTACTATCAAAGAGTTTTCT
ATCTTTGCCGCCTTTAATAACCTCATCCATGCCATAACTTGTTCCAATAACCCTGTAAAA
CATTTGAACTATAGGGGCACCATGCTCTTTCACCTGATACATAGCTGCGAGAGTCCGGAG
TCAACCGCTTCCATCCATGCAATCAAATCATCTTCAATCAAAGACACTGCACTCTCATTG
CCACTTTGACTGGAACTAGCTGCACCTGCACCATCAAAGCTCACCTTCGCTCTACAATAG
GGACACTTTGCATGGTTTTCCAGTCATGGAGTCAGACAGTTCGGGTGGAATCTGTGCTGA
GTACCTGCAGGTAATATCTCAAGGGCGAAT
■■Homology search results ■■ -
sp_hit_id Q8RXX9
Definition sp|Q8RXX9|ATL3B_ARATH RING-H2 finger protein ATL3B OS=Arabidopsis thaliana
Align length 34
Score (bit) 36.6
E-value 0.09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915059|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_A06.
         (570 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8RXX9|ATL3B_ARATH RING-H2 finger protein ATL3B OS=Arabidopsi...    37   0.090
sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster ...    35   0.20 
sp|Q5XF85|ATL4J_ARATH RING-H2 finger protein ATL4J OS=Arabidopsi...    35   0.20 
sp|P0C041|ATL4H_ARATH Putative RING-H2 finger protein ATL4H OS=A...    35   0.20 
sp|Q9SL78|ATL2D_ARATH Putative RING-H2 finger protein ATL2D OS=A...    35   0.20 
sp|Q5SSZ7|ZNRF3_MOUSE Zinc/RING finger protein 3 OS=Mus musculus...    35   0.34 
sp|Q9ULT6|ZNRF3_HUMAN Zinc/RING finger protein 3 OS=Homo sapiens...    35   0.34 
sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04...    35   0.34 
sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN...    35   0.34 
sp|Q9LSW9|ATL5K_ARATH RING-H2 finger protein ATL5K OS=Arabidopsi...    35   0.34 
sp|Q9LX93|ATL5F_ARATH RING-H2 finger protein ATL5F OS=Arabidopsi...    35   0.34 
sp|P30631|YOUD_CAEEL Uncharacterized RING finger protein ZK637.1...    34   0.45 
sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN...    34   0.45 
sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=R...    34   0.45 
sp|Q8LGA5|ATL5H_ARATH RING-H2 finger protein ATL5H OS=Arabidopsi...    34   0.45 
sp|Q84W40|ATL1N_ARATH RING-H2 finger protein ATL1N OS=Arabidopsi...    34   0.58 
sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropica...    33   0.76 
sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevi...    33   0.76 
sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevi...    33   0.76 
sp|Q8L9W3|ATL5J_ARATH RING-H2 finger protein ATL5J OS=Arabidopsi...    33   0.76 
sp|Q9FG21|ATL5D_ARATH Putative RING-H2 finger protein ATL5D OS=A...    33   0.76 
sp|Q8LFY8|ATL1O_ARATH RING-H2 finger protein ATL1O OS=Arabidopsi...    33   0.76 
sp|Q9Y4L5|RN115_HUMAN RING finger protein 115 OS=Homo sapiens GN...    33   0.99 
sp|Q86XS8|GOLI_HUMAN Goliath homolog OS=Homo sapiens GN=RNF130 P...    33   0.99 
sp|Q9LF64|ATL5G_ARATH Probable RING-H2 finger protein ATL5G OS=A...    33   0.99 
sp|Q9SRQ8|ATL3A_ARATH RING-H2 finger protein ATL3A OS=Arabidopsi...    33   0.99 
sp|Q95K04|RN133_MACFA RING finger protein 133 OS=Macaca fascicul...    33   1.3  
sp|Q9D0C1|RN115_MOUSE RING finger protein 115 OS=Mus musculus GN...    33   1.3  
sp|Q6Y290|GOLI_RAT Goliath homolog OS=Rattus norvegicus GN=Rnf13...    33   1.3  
sp|Q8VEM1|GOLI_MOUSE Goliath homolog OS=Mus musculus GN=Rnf130 P...    33   1.3  

>sp|Q8RXX9|ATL3B_ARATH RING-H2 finger protein ATL3B OS=Arabidopsis
           thaliana GN=ATL3B PE=1 SV=2
          Length = 398

 Score = 36.6 bits (83), Expect = 0.090
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 563 LEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           L +LP    H FHP+C+   LE H  CP CRA +
Sbjct: 141 LRLLPK-CDHVFHPHCIDAWLEAHVTCPVCRANL 173


>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster
           GN=gol PE=2 SV=3
          Length = 461

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 563 LEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           + ILP   +H FH NC+ P L  H  CP C+  V
Sbjct: 316 IRILPC--KHEFHKNCIDPWLIEHRTCPMCKLDV 347


>sp|Q5XF85|ATL4J_ARATH RING-H2 finger protein ATL4J OS=Arabidopsis
           thaliana GN=ATL4J PE=2 SV=2
          Length = 432

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 563 LEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           L +LP   +H FH  C+   LE HA CP CR +V
Sbjct: 136 LRLLPK-CRHAFHIGCIDQWLEQHATCPLCRDRV 168


>sp|P0C041|ATL4H_ARATH Putative RING-H2 finger protein ATL4H
           OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1
          Length = 336

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 566 ALEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           +L +LP    H FH  C+   L++H+ CP CRAK+
Sbjct: 193 SLRLLPK-CNHTFHVVCIDRWLKSHSNCPLCRAKI 226


>sp|Q9SL78|ATL2D_ARATH Putative RING-H2 finger protein ATL2D
           OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1
          Length = 390

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 563 LEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           L +LP   +H FH  C+   LE HA CP CR +V
Sbjct: 137 LRLLPK-CRHAFHIGCIDQWLEQHATCPLCRNRV 169


>sp|Q5SSZ7|ZNRF3_MOUSE Zinc/RING finger protein 3 OS=Mus musculus
           GN=Znrf3 PE=2 SV=1
          Length = 913

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 563 LEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           L ++P    HRFH  C+ P L  H  CP+CR  +
Sbjct: 303 LRVIPC--THRFHRKCVDPWLLQHHTCPHCRHNI 334


>sp|Q9ULT6|ZNRF3_HUMAN Zinc/RING finger protein 3 OS=Homo sapiens
           GN=ZNRF3 PE=2 SV=3
          Length = 936

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 563 LEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           L ++P    HRFH  C+ P L  H  CP+CR  +
Sbjct: 306 LRVIPC--THRFHRKCVDPWLLQHHTCPHCRHNI 337


>sp|Q9Y7K6|YGI4_SCHPO Uncharacterized RING finger protein C2A9.04c
           OS=Schizosaccharomyces pombe GN=SPBC2A9.04c PE=2 SV=1
          Length = 741

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -2

Query: 554 LPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           +P G  H F  NCL   LENH  CP CR +V
Sbjct: 125 MPCG--HIFGKNCLQKWLENHCTCPLCRKEV 153


>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus
           GN=Rnf126 PE=1 SV=1
          Length = 313

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 536 HRFHPNCLTP*LENHAKCPYCR 471
           H FH +C+ P LE H  CP CR
Sbjct: 251 HLFHDSCIVPWLEQHDSCPVCR 272


>sp|Q9LSW9|ATL5K_ARATH RING-H2 finger protein ATL5K OS=Arabidopsis
           thaliana GN=ATL5K PE=2 SV=1
          Length = 375

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 563 LEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           L I+P    H FH +C+   L+N+A CP CR +V
Sbjct: 151 LRIIP-NCSHLFHIDCIDVWLQNNANCPLCRTRV 183
tr_hit_id A9SYM4
Definition tr|A9SYM4|A9SYM4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 33
Score (bit) 52.0
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915059|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_A06.
         (570 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SYM4|A9SYM4_PHYPA Predicted protein (Fragment) OS=Physcomit...    52   2e-05
tr|A9SWZ3|A9SWZ3_PHYPA Predicted protein (Fragment) OS=Physcomit...    50   7e-05
tr|B8LQL1|B8LQL1_PICSI Putative uncharacterized protein OS=Picea...    43   0.014
tr|B6TER8|B6TER8_MAIZE RING-H2 finger protein ATL3B OS=Zea mays ...    42   0.031
tr|Q6Z5I5|Q6Z5I5_ORYSJ Os02g0572200 protein OS=Oryza sativa subs...    41   0.041
tr|A3A879|A3A879_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.041
tr|A2X6B2|A2X6B2_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.041
tr|A3A880|A3A880_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.053
tr|A2X6B4|A2X6B4_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.053
tr|A0CDN9|A0CDN9_PARTE Chromosome undetermined scaffold_17, whol...    40   0.069
tr|B7FF93|B7FF93_MEDTR Putative uncharacterized protein OS=Medic...    40   0.090
tr|B6SWY2|B6SWY2_MAIZE Protein binding protein OS=Zea mays PE=2 ...    40   0.090
tr|Q10Q76|Q10Q76_ORYSJ Os03g0206900 protein OS=Oryza sativa subs...    39   0.15 
tr|A9NLN0|A9NLN0_PICSI Putative uncharacterized protein OS=Picea...    39   0.15 
tr|A2XDR0|A2XDR0_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.15 
tr|A0DPD8|A0DPD8_PARTE Chromosome undetermined scaffold_59, whol...    39   0.15 
tr|A6RAH8|A6RAH8_AJECN Putative uncharacterized protein OS=Ajell...    39   0.26 
tr|A9RG96|A9RG96_PHYPA Predicted protein (Fragment) OS=Physcomit...    38   0.34 
tr|Q7XV51|Q7XV51_ORYSJ Os04g0450300 protein OS=Oryza sativa subs...    38   0.45 
tr|Q01JI8|Q01JI8_ORYSA H0818E04.18 protein OS=Oryza sativa GN=H0...    38   0.45 
tr|B8AUE1|B8AUE1_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.45 
tr|B6TY50|B6TY50_MAIZE RHC1A OS=Zea mays PE=2 SV=1                     38   0.45 
tr|B6TJR2|B6TJR2_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.45 
tr|B6T559|B6T559_MAIZE RING finger protein 126 OS=Zea mays PE=2 ...    38   0.45 
tr|B6STU7|B6STU7_MAIZE RHC1A OS=Zea mays PE=2 SV=1                     38   0.45 
tr|B4FQN0|B4FQN0_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.45 
tr|B4FPB3|B4FPB3_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.45 
tr|B4FK67|B4FK67_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.45 
tr|Q54VX1|Q54VX1_DICDI Putative uncharacterized protein OS=Dicty...    38   0.45 
tr|Q7XZF6|Q7XZF6_ORYSJ Os03g0812200 protein OS=Oryza sativa subs...    37   0.59 

>tr|A9SYM4|A9SYM4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_19743 PE=4 SV=1
          Length = 78

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = -2

Query: 560 EILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           ++L     H+FHPNCLTP LE H +CPYCRA++
Sbjct: 46  KLLALPCNHKFHPNCLTPWLEGHEQCPYCRARI 78


>tr|A9SWZ3|A9SWZ3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_19944 PE=4 SV=1
          Length = 56

 Score = 50.4 bits (119), Expect = 7e-05
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = -2

Query: 557 ILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           +L     HRFHPNCL P LE H +CPYCRA++
Sbjct: 18  LLALPCNHRFHPNCLIPWLEGHEQCPYCRARI 49


>tr|B8LQL1|B8LQL1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 387

 Score = 42.7 bits (99), Expect = 0.014
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = -2

Query: 560 EILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           +++  G +HRFHP CL P L+    CPYCRA V
Sbjct: 338 QLIRLGCRHRFHPVCLNPWLKICGDCPYCRANV 370


>tr|B6TER8|B6TER8_MAIZE RING-H2 finger protein ATL3B OS=Zea mays
           PE=2 SV=1
          Length = 348

 Score = 41.6 bits (96), Expect = 0.031
 Identities = 20/35 (57%), Positives = 21/35 (60%)
 Frame = -2

Query: 566 ALEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           AL ILP    H FHP C+   LE HA CP CRA V
Sbjct: 131 ALRILPT-CPHAFHPECIGLWLERHATCPLCRASV 164


>tr|Q6Z5I5|Q6Z5I5_ORYSJ Os02g0572200 protein OS=Oryza sativa subsp.
           japonica GN=P0689H05.43 PE=2 SV=1
          Length = 349

 Score = 41.2 bits (95), Expect = 0.041
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -2

Query: 563 LEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           L +LP    H FHP+C+ P LE H  CP CRA +
Sbjct: 136 LRLLPQ-CSHAFHPDCIDPWLEGHVTCPLCRANL 168


>tr|A3A879|A3A879_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_007001 PE=4 SV=1
          Length = 265

 Score = 41.2 bits (95), Expect = 0.041
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -2

Query: 563 LEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           L +LP    H FHP+C+ P LE H  CP CRA +
Sbjct: 136 LRLLPQ-CSHAFHPDCIDPWLEGHVTCPLCRANL 168


>tr|A2X6B2|A2X6B2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07750 PE=4 SV=1
          Length = 348

 Score = 41.2 bits (95), Expect = 0.041
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = -2

Query: 563 LEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           L +LP    H FHP+C+ P LE H  CP CRA +
Sbjct: 135 LRLLPQ-CSHAFHPDCIDPWLEGHVTCPLCRANL 167


>tr|A3A880|A3A880_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_007002 PE=4 SV=1
          Length = 353

 Score = 40.8 bits (94), Expect = 0.053
 Identities = 19/35 (54%), Positives = 21/35 (60%)
 Frame = -2

Query: 566 ALEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           AL +LPA   H FHP C+   LE H  CP CRA V
Sbjct: 141 ALRLLPA-CPHAFHPECIGLWLEKHVTCPLCRANV 174


>tr|A2X6B4|A2X6B4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07752 PE=4 SV=1
          Length = 351

 Score = 40.8 bits (94), Expect = 0.053
 Identities = 19/35 (54%), Positives = 21/35 (60%)
 Frame = -2

Query: 566 ALEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           AL +LPA   H FHP C+   LE H  CP CRA V
Sbjct: 140 ALRLLPA-CPHAFHPECIGLWLEKHVTCPLCRANV 173


>tr|A0CDN9|A0CDN9_PARTE Chromosome undetermined scaffold_17, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00007118001 PE=4 SV=1
          Length = 364

 Score = 40.4 bits (93), Expect = 0.069
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -2

Query: 563 LEILPAGTQHRFHPNCLTP*LENHAKCPYCRAKV 462
           + ILP   +HRFH  C+   LE ++KCP CR+ V
Sbjct: 323 IAILPCSNKHRFHSTCVRSWLEINSKCPLCRSDV 356