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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915071
Clone id YMU001_000066_B08
Library
Length 447
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACGAGATATTACCTGCAGGTACTCCCACTAGCGCTTCCTCCTCCTCTTCCTCAGGGCCC
TCTTTGGAAGGCTCCCCATCCTTTGTACACAGAAGCAAATACTCAGATTATAGCCTTCTC
CATCTCCAAGCGACAGAGCAACCTCTCGCAGGTAGGAAGCCCTCTGTCCAGCGATTCCGA
GTGCAAGGAGCCGTCCGAAAGCCCTCTCAATCACTCCAATGCTAGCAATGTAATTGGAAT
GAGCACTACAGTGAGCACGAACTGCTATCCAGTCACAGAAAGATGCCTCACCCATCATAA
GCAAGCTCCTCAGAGAGGATACAACAAGGCACCACAAGCACCTTCCTCTAGTGTATTGTC
CTCTCAAGCATCTGTTGGAGCTGGAGCATCGAAAGTAAGCAAGCGGCGGTCACGCTCAAA
CAAGAAACCGCCAATTGCTGTCCTCGC
■■Homology search results ■■ -
sp_hit_id P28167
Definition sp|P28167|ZFH2_DROME Zinc finger protein 2 OS=Drosophila melanogaster
Align length 38
Score (bit) 35.4
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915071|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_B08.
         (447 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P28167|ZFH2_DROME Zinc finger protein 2 OS=Drosophila melanog...    35   0.11 
sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus musc...    33   0.73 
sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sap...    33   0.73 
sp|Q9JJN2|ZFHX4_MOUSE Zinc finger homeobox protein 4 OS=Mus musc...    32   0.95 
sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo sap...    32   0.95 
sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus g...    32   0.95 
sp|Q21045|YB70_CAEEL Uncharacterized protein F59F5.2 OS=Caenorha...    32   1.6  
sp|Q556Z3|TPC10_DICDI Trafficking protein particle complex subun...    31   2.7  
sp|Q54Q69|DHKG_DICDI Hybrid signal transduction histidine kinase...    30   3.5  
sp|Q9UBU2|DKK2_HUMAN Dickkopf-related protein 2 OS=Homo sapiens ...    30   4.6  
sp|O74535|CPSFX_SCHPO Cleavage and polyadenylation factor comple...    30   4.6  
sp|P39956|RPH1_YEAST DNA damage-responsive transcriptional repre...    30   6.0  
sp|Q9UPU6|ZN409_HUMAN Zinc finger protein 409 OS=Homo sapiens GN...    30   6.1  
sp|Q5PZ43|XIRP1_DANRE Xin actin-binding repeat-containing protei...    29   7.8  
sp|Q54SK5|DHKM_DICDI Hybrid signal transduction histidine kinase...    29   7.8  

>sp|P28167|ZFH2_DROME Zinc finger protein 2 OS=Drosophila
           melanogaster GN=zfh2 PE=1 SV=2
          Length = 3005

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 VQGAVRKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           VQ + R   ++L+C QCNW  HY   E L  H +  HP
Sbjct: 548 VQMSTRNSCKTLKCPQCNW--HYKYQETLEIHMREKHP 583


>sp|Q61329|ZFHX3_MOUSE Zinc finger homeobox protein 3 OS=Mus
           musculus GN=Zfhx3 PE=1 SV=1
          Length = 3726

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 196 RKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHPS*ASSSERIQQG 330
           R   ++L+C +CNW  HY   + L +H K  HP    S    + G
Sbjct: 666 RNSCKTLKCPKCNW--HYKYQQTLEAHMKEKHPEPGGSCVYCKSG 708


>sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo
           sapiens GN=ZFHX3 PE=1 SV=2
          Length = 3703

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 196 RKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHPS*ASSSERIQQG 330
           R   ++L+C +CNW  HY   + L +H K  HP    S    + G
Sbjct: 665 RNSCKTLKCPKCNW--HYKYQQTLEAHMKEKHPEPGGSCVYCKSG 707


>sp|Q9JJN2|ZFHX4_MOUSE Zinc finger homeobox protein 4 OS=Mus
           musculus GN=Zfhx4 PE=1 SV=1
          Length = 3550

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 196 RKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           R   ++L+C +CNW  HY   + L +H K  HP
Sbjct: 636 RNSCKTLKCPKCNW--HYKYQQTLEAHMKEKHP 666



 Score = 29.6 bits (65), Expect = 6.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 98  NTQIIAFSISKRQSNLSQVGSPLSSDSECKEPSESPLNHSN 220
           NT I + S+S   S  S++      ++ C+ P ES + H N
Sbjct: 416 NTPITSVSLSHLSSESSKMSESKDQENNCERPKESTILHPN 456


>sp|Q86UP3|ZFHX4_HUMAN Zinc finger homeobox protein 4 OS=Homo
           sapiens GN=ZFHX4 PE=1 SV=1
          Length = 3567

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 196 RKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           R   ++L+C +CNW  HY   + L +H K  HP
Sbjct: 638 RNSCKTLKCPKCNW--HYKYQQTLEAHMKEKHP 668



 Score = 29.3 bits (64), Expect = 7.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 98  NTQIIAFSISKRQSNLSQVGSPLSSDSECKEPSESPLNHSN 220
           NT I + S+S   S  S++      ++ C+ P ES + H N
Sbjct: 417 NTPITSVSLSHSSSESSKMSESKDQENNCERPKESNVLHPN 457


>sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus
           gallus GN=ZFHX4 PE=2 SV=2
          Length = 3573

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 196 RKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           R   ++L+C +CNW  HY   + L +H K  HP
Sbjct: 634 RNSCKTLKCPKCNW--HYKYQQTLEAHMKEKHP 664


>sp|Q21045|YB70_CAEEL Uncharacterized protein F59F5.2
           OS=Caenorhabditis elegans GN=F59F5.2 PE=2 SV=2
          Length = 179

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +2

Query: 107 IIAFSISKRQSNLSQVGSPLSSDSECKEPSESPLNHSNASNVIGMSTTVSTNCYPV 274
           +I   I+ R+S+L    S + S S C E  ES L+H    NV+  S+ +S    P+
Sbjct: 29  LIQSEITSRKSDLDSASSGVGS-STCTEEQESSLDHFKKPNVVFNSSEISHILLPL 83


>sp|Q556Z3|TPC10_DICDI Trafficking protein particle complex subunit
           10 OS=Dictyostelium discoideum GN=trapcc10-1 PE=3 SV=1
          Length = 1442

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 80  PLYTEANTQIIAFSISKRQSNLSQVGSPLSSDSECKEPSESPLNHSNASN 229
           P  + ++   I+ S S   +NL     PLSS S    P++  L HS++S+
Sbjct: 36  PTLSSSSASSISNSNSSSSNNLKPSTQPLSSSSTLNTPTQFSLQHSSSSS 85


>sp|Q54Q69|DHKG_DICDI Hybrid signal transduction histidine kinase G
           OS=Dictyostelium discoideum GN=dhkG PE=3 SV=1
          Length = 3432

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
 Frame = +2

Query: 113 AFSISKRQSNLSQVGSPL-----------SSDSECKEPSESPLNHSNASNVIGMSTTVST 259
           AF   +  S+ +  GSPL           +S+S     S SP+ HSN +  I  +TT ++
Sbjct: 439 AFKPFQLNSSTNSTGSPLIITSQPMPFQLNSNSNTTASSSSPITHSNLNTAITSTTTSNS 498

Query: 260 N 262
           N
Sbjct: 499 N 499


>sp|Q9UBU2|DKK2_HUMAN Dickkopf-related protein 2 OS=Homo sapiens
           GN=DKK2 PE=1 SV=1
          Length = 259

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 16/81 (19%)
 Frame = +2

Query: 104 QIIAFSISKRQSNLSQVGSPLSSDSECK--EPSESPLNHSNASNVI----------GM-- 241
           Q +AF  SK+  NL Q   P SSD EC+      SP   S+A  V           GM  
Sbjct: 59  QGLAFGGSKKGKNLGQA-YPCSSDKECEVGRYCHSPHQGSSACMVCRRKKKRCHRDGMCC 117

Query: 242 -STTVSTN-CYPVTERCLTHH 298
            ST  +   C PVTE  LT H
Sbjct: 118 PSTRCNNGICIPVTESILTPH 138
tr_hit_id Q29CS4
Definition tr|Q29CS4|Q29CS4_DROPS GA13024 OS=Drosophila pseudoobscura pseudoobscura
Align length 38
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915071|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_B08.
         (447 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q29CS4|Q29CS4_DROPS GA13024 OS=Drosophila pseudoobscura pseud...    35   1.4  
tr|B4PW10|B4PW10_DROYA GE14550 OS=Drosophila yakuba GN=GE14550 P...    35   1.4  
tr|B4NHL7|B4NHL7_DROWI GK13603 OS=Drosophila willistoni GN=GK136...    35   1.4  
tr|B4MF05|B4MF05_DROVI GJ19746 OS=Drosophila virilis GN=GJ19746 ...    35   1.4  
tr|B4L7B9|B4L7B9_DROMO GI14048 OS=Drosophila mojavensis GN=GI140...    35   1.4  
tr|B4JZV9|B4JZV9_DROGR GH24013 OS=Drosophila grimshawi GN=GH2401...    35   1.4  
tr|B4IIW7|B4IIW7_DROSE GM26798 OS=Drosophila sechellia GN=GM2679...    35   1.4  
tr|B4H879|B4H879_DROPE GL18142 OS=Drosophila persimilis GN=GL181...    35   1.4  
tr|B3P9T1|B3P9T1_DROER GG16389 OS=Drosophila erecta GN=GG16389 P...    35   1.4  
tr|B3N043|B3N043_DROAN GF19021 OS=Drosophila ananassae GN=GF1902...    35   1.4  
tr|B6IFZ4|B6IFZ4_CAEBR Putative uncharacterized protein OS=Caeno...    35   1.9  
tr|A8Q4U5|A8Q4U5_MALGO Putative uncharacterized protein OS=Malas...    35   2.4  
tr|Q5CVR1|Q5CVR1_CRYPV 12x WD40 repeat containing protein (Fragm...    34   3.1  
tr|B0XH73|B0XH73_CULQU Putative uncharacterized protein OS=Culex...    33   5.5  
tr|B0WHF0|B0WHF0_CULQU Putative uncharacterized protein OS=Culex...    33   5.5  
tr|A7BYM1|A7BYM1_9GAMM Putative uncharacterized protein OS=Beggi...    33   7.0  
tr|Q17F58|Q17F58_AEDAE Putative uncharacterized protein OS=Aedes...    33   7.2  
tr|O45019|O45019_CAEEL Putative uncharacterized protein OS=Caeno...    33   7.2  

>tr|Q29CS4|Q29CS4_DROPS GA13024 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA13024 PE=3 SV=2
          Length = 3036

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 VQGAVRKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           VQ + R   ++L+C QCNW  HY   E L  H +  HP
Sbjct: 561 VQMSTRNSCKTLKCPQCNW--HYKYQETLEIHMREKHP 596


>tr|B4PW10|B4PW10_DROYA GE14550 OS=Drosophila yakuba GN=GE14550 PE=4
           SV=1
          Length = 2872

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 VQGAVRKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           VQ + R   ++L+C QCNW  HY   E L  H +  HP
Sbjct: 416 VQMSTRNSCKTLKCPQCNW--HYKYQETLEIHMREKHP 451


>tr|B4NHL7|B4NHL7_DROWI GK13603 OS=Drosophila willistoni GN=GK13603
           PE=4 SV=1
          Length = 3147

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 VQGAVRKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           VQ + R   ++L+C QCNW  HY   E L  H +  HP
Sbjct: 582 VQMSTRNSCKTLKCPQCNW--HYKYQETLEIHMREKHP 617


>tr|B4MF05|B4MF05_DROVI GJ19746 OS=Drosophila virilis GN=GJ19746
           PE=4 SV=1
          Length = 3176

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 VQGAVRKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           VQ + R   ++L+C QCNW  HY   E L  H +  HP
Sbjct: 605 VQMSTRNSCKTLKCPQCNW--HYKYQETLEIHMREKHP 640


>tr|B4L7B9|B4L7B9_DROMO GI14048 OS=Drosophila mojavensis GN=GI14048
           PE=4 SV=1
          Length = 3231

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 VQGAVRKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           VQ + R   ++L+C QCNW  HY   E L  H +  HP
Sbjct: 603 VQMSTRNSCKTLKCPQCNW--HYKYQETLEIHMREKHP 638


>tr|B4JZV9|B4JZV9_DROGR GH24013 OS=Drosophila grimshawi GN=GH24013
           PE=4 SV=1
          Length = 3216

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 VQGAVRKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           VQ + R   ++L+C QCNW  HY   E L  H +  HP
Sbjct: 630 VQMSTRNSCKTLKCPQCNW--HYKYQETLEIHMREKHP 665


>tr|B4IIW7|B4IIW7_DROSE GM26798 OS=Drosophila sechellia GN=GM26798
           PE=4 SV=1
          Length = 1108

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 VQGAVRKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           VQ + R   ++L+C QCNW  HY   E L  H +  HP
Sbjct: 562 VQMSTRNSCKTLKCPQCNW--HYKYQETLEIHMREKHP 597


>tr|B4H879|B4H879_DROPE GL18142 OS=Drosophila persimilis GN=GL18142
           PE=4 SV=1
          Length = 3044

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 VQGAVRKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           VQ + R   ++L+C QCNW  HY   E L  H +  HP
Sbjct: 561 VQMSTRNSCKTLKCPQCNW--HYKYQETLEIHMREKHP 596


>tr|B3P9T1|B3P9T1_DROER GG16389 OS=Drosophila erecta GN=GG16389 PE=4
           SV=1
          Length = 2760

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 VQGAVRKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           VQ + R   ++L+C QCNW  HY   E L  H +  HP
Sbjct: 368 VQMSTRNSCKTLKCPQCNW--HYKYQETLEIHMREKHP 403


>tr|B3N043|B3N043_DROAN GF19021 OS=Drosophila ananassae GN=GF19021
           PE=4 SV=1
          Length = 2954

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 181 VQGAVRKPSQSLQC*QCNWNEHYSEHELLSSHRKMPHP 294
           VQ + R   ++L+C QCNW  HY   E L  H +  HP
Sbjct: 553 VQMSTRNSCKTLKCPQCNW--HYKYQETLEIHMREKHP 588