BP915072 |
Clone id |
YMU001_000066_B10 |
Library |
YMU01 |
Length |
517 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000066_B10. |
Accession |
BP915072 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GTCCAAAAGCGTCTTACAACCTGCAACTTCGTCAGCCTTGAATGCATGATACTAGCAAAC GAGTTGTGTTGTTGCATCAATTGCTCTATTATGTCAGAGTCGTCAATAGTACCAGTTGGG GACCTCTCTCGAATGCCCTGACTCCCTTTCAAGATAAATGTGTTGGTATCGAAAACCGAT GACTTCATCACATGCCCAGTAGGTATGCCGAACATATGAACGGCCCCTGTAGTTTCCTTC TTATCAAATGCACTAGCCACCGATCTAACACGCCCAGCCTCTACAGGACCCAAATAAGAA GCATCTCTTGCACCAGTGTATCGATCTTCACCTCTCACTGCATCCTCCTCTGGGAATGGT GGTTGCATCCCACGAACAATGCTGCCTATTTGAGCTCCACTAGAAGCAGTTCTCCTGAAT TTTCCAGTTCCAATCCACTTAACATGGCCATGTTCGCTGTCACTTGACGCAGGTACTCCT TCACTTGGCGTTTCTGAACAAGGTAAAGGAGCACTCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8H0T9 |
Definition |
sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana |
Align length |
109 |
Score (bit) |
48.5 |
E-value |
2.0e-05 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q7XKB3 |
Definition |
tr|Q7XKB3|Q7XKB3_ORYSJ OSJNBa0064G10.18 protein OS=Oryza sativa subsp. japonica |
Align length |
132 |
Score (bit) |
54.7 |
E-value |
3.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915072|Adiantum capillus-veneris mRNA, clone: YMU001_000066_B10. (517 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q7XKB3|Q7XKB3_ORYSJ OSJNBa0064G10.18 protein OS=Oryza sativa ... 55 3e-06 tr|B8ARG7|B8ARG7_ORYSI Putative uncharacterized protein OS=Oryza... 52 1e-05 tr|A7QNQ6|A7QNQ6_VITVI Chromosome undetermined scaffold_133, who... 49 1e-04 tr|Q9FT96|Q9FT96_ARATH Katanin p80 subunit-like protein OS=Arabi... 48 3e-04 tr|Q0WV51|Q0WV51_ARATH Katanin p80 subunit-like protein OS=Arabi... 47 4e-04 tr|A7R3U4|A7R3U4_VITVI Chromosome undetermined scaffold_569, who... 46 0.001 tr|A9NZH1|A9NZH1_PICSI Putative uncharacterized protein OS=Picea... 46 0.001 tr|Q259K2|Q259K2_ORYSA H0402C08.11 protein OS=Oryza sativa GN=H0... 43 0.011 tr|Q259E8|Q259E8_ORYSA H0801D08.1 protein OS=Oryza sativa GN=H08... 43 0.011 tr|Q0J906|Q0J906_ORYSJ Os04g0677700 protein OS=Oryza sativa subs... 43 0.011 tr|A7R4S1|A7R4S1_VITVI Chromosome undetermined scaffold_764, who... 43 0.011 tr|A3AYM9|A3AYM9_ORYSJ Putative uncharacterized protein OS=Oryza... 43 0.011 tr|Q0UGZ3|Q0UGZ3_PHANO Putative uncharacterized protein OS=Phaeo... 42 0.018 tr|Q9SXA3|Q9SXA3_ARATH T28P6.17 protein OS=Arabidopsis thaliana ... 41 0.040 tr|Q5ZCG1|Q5ZCG1_ORYSJ Katanin p80 (WD40-containing) subunit B 1... 40 0.089 tr|B8AAF1|B8AAF1_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.089 tr|Q337H9|Q337H9_ORYSJ Os10g0494800 protein OS=Oryza sativa subs... 38 0.26 tr|B8BHN3|B8BHN3_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.26 tr|A3C629|A3C629_ORYSJ Putative uncharacterized protein OS=Oryza... 38 0.26 tr|A9SPP1|A9SPP1_PHYPA Predicted protein (Fragment) OS=Physcomit... 38 0.34 tr|B6M2H4|B6M2H4_BRAFL Putative uncharacterized protein OS=Branc... 38 0.34 tr|A2ZYF4|A2ZYF4_ORYSJ Putative uncharacterized protein OS=Oryza... 36 0.98 tr|B8P377|B8P377_9APHY Predicted protein OS=Postia placenta Mad-... 36 0.98 tr|A5DMZ8|A5DMZ8_PICGU Predicted protein (Fragment) OS=Pichia gu... 36 0.98 tr|O22725|O22725_ARATH F11P17.7 protein OS=Arabidopsis thaliana ... 36 1.3 tr|A2AGJ8|A2AGJ8_MOUSE Novel protein OS=Mus musculus GN=2410042D... 35 1.7 tr|B1VJ25|B1VJ25_CORU7 Putative membrane protein OS=Corynebacter... 35 1.7 tr|B1WBZ9|B1WBZ9_RAT Putative uncharacterized protein LOC691543 ... 35 2.2 tr|Q5WFQ9|Q5WFQ9_BACSK Flagellum-specific ATP synthase OS=Bacill... 35 2.2 tr|B7ZLG9|B7ZLG9_HUMAN Putative uncharacterized protein OS=Homo ... 35 2.2
>tr|Q7XKB3|Q7XKB3_ORYSJ OSJNBa0064G10.18 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0064G10.18 PE=4 SV=2 Length = 935
Score = 54.7 bits (130), Expect = 3e-06 Identities = 45/132 (34%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Frame = -3
Query: 395 AQIGSIVRGMQPPFPEEDAVRGEDRYTGARDASYLGPVEAGRVRSVASAFDKKETTGAVH 216 A+ G I R P E + R R RD Y+ AGR R AS ++ ++ + Sbjct: 670 AKPGVIDRMGFPSSAEPNTHRNVSRMRKPRDNCYIEVSRAGRTRPTASNWESRDQSPGNE 729
Query: 215 MFGIPTGHVMKSSVFDTNTFILKGSQGIRERSPTGTI-DDSDIIEQLMQQHNSFASIMHS 39 PT SS+ T L S+G + + T TI D D++ LM+QH F S S Sbjct: 730 E---PTTS-NSSSMAPTGR--LYSSRGSSQAAETPTIASDEDVLSVLMEQHELFLSSTRS 783
Query: 38 RLTKLQVVRRFW 3 RLTKLQ+V + W Sbjct: 784 RLTKLQIVHQMW 795
>tr|B8ARG7|B8ARG7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_17928 PE=4 SV=1 Length = 950
Score = 52.4 bits (124), Expect = 1e-05 Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 4/135 (2%) Frame = -3
Query: 395 AQIGSIVRGMQPPFPEEDAVRGED---RYTGARDASYLGPVEAGRVRSVASAFDKKETTG 225 A+ G I R P E + R E+ R RD Y+ AGR R AS ++ ++ + Sbjct: 682 AKPGVIDRMGFPSSAEPNTHRSENYVSRMRKPRDNCYIEVSRAGRTRPTASNWESRDQSP 741
Query: 224 AVHMFGIPTGHVMKSSVFDTNTFILKGSQGIRERSPTGTID-DSDIIEQLMQQHNSFASI 48 PT SS+ T L S+G + + T TI D D++ LM+QH F S Sbjct: 742 GNEE---PTTS-NSSSMAPTGR--LYSSRGSSQAAETPTISSDEDVLSVLMEQHELFLSS 795
Query: 47 MHSRLTKLQVVRRFW 3 SRLTKLQ+V + W Sbjct: 796 TRSRLTKLQIVHQMW 810
>tr|A7QNQ6|A7QNQ6_VITVI Chromosome undetermined scaffold_133, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002624001 PE=4 SV=1 Length = 922
Score = 48.9 bits (115), Expect = 1e-04 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 7/109 (6%) Frame = -3
Query: 308 RDASYLGPVEAGRVRSVASAFDKKETTGAVHMFGIPTGHVMKSSVFDTNT-------FIL 150 RDA + + GR RS+ + ++K+E + PT SS F F Sbjct: 684 RDACSIEVQKGGRTRSLVANWEKREIS--------PTYEGQTSSNFSGTVSASNMLPFSA 735
Query: 149 KGSQGIRERSPTGTIDDSDIIEQLMQQHNSFASIMHSRLTKLQVVRRFW 3 +G E+ D+ D I +M+QH F + SRL+KLQVV RFW Sbjct: 736 RGYTPSTEKEAVPASDE-DAITDIMEQHGQFVGSIQSRLSKLQVVHRFW 783
>tr|Q9FT96|Q9FT96_ARATH Katanin p80 subunit-like protein OS=Arabidopsis thaliana GN=F8L15_120 PE=4 SV=1 Length = 823
Score = 48.1 bits (113), Expect = 3e-04 Identities = 20/33 (60%), Positives = 25/33 (75%) Frame = -3
Query: 101 DSDIIEQLMQQHNSFASIMHSRLTKLQVVRRFW 3 + DI+ +M QH+ F S MHSRL KLQVVRR+W Sbjct: 661 EEDIVADIMGQHDQFVSSMHSRLAKLQVVRRYW 693
>tr|Q0WV51|Q0WV51_ARATH Katanin p80 subunit-like protein OS=Arabidopsis thaliana GN=At5g08390 PE=2 SV=1 Length = 839
Score = 47.4 bits (111), Expect = 4e-04 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 7/113 (6%) Frame = -3
Query: 320 YTGARDASYLGPVEAGRVRSVASAFDKKETTGAVHMFGIPTGHVMKSSVFDTNTFILKGS 141 Y RD+S + GR+ S+ +E G F P ++ N+ + S Sbjct: 593 YNANRDSSPTESRKGGRLHSLVL---NRERRGRFSNFEGPVSSSSGGNMTAPNS---RPS 646
Query: 140 QGIRERSPTGTID-------DSDIIEQLMQQHNSFASIMHSRLTKLQVVRRFW 3 +++R +D + DI+ +M QH+ F S MHS L KLQVVRR+W Sbjct: 647 NMLKQRGNHVPVDQGITSASEEDIVADIMGQHDQFVSSMHSLLAKLQVVRRYW 699
>tr|A7R3U4|A7R3U4_VITVI Chromosome undetermined scaffold_569, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00003952001 PE=4 SV=1 Length = 197
Score = 46.2 bits (108), Expect = 0.001 Identities = 24/51 (47%), Positives = 32/51 (62%) Frame = -3
Query: 155 ILKGSQGIRERSPTGTIDDSDIIEQLMQQHNSFASIMHSRLTKLQVVRRFW 3 +LKG I R T +++ I E ++Q H+ F S + SRLTKLQVVR FW Sbjct: 10 MLKGQPQISGRESTAASEENTI-EDVIQNHDLFISTLRSRLTKLQVVRHFW 59
>tr|A9NZH1|A9NZH1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 163
Score = 45.8 bits (107), Expect = 0.001 Identities = 19/25 (76%), Positives = 23/25 (92%) Frame = -3
Query: 77 MQQHNSFASIMHSRLTKLQVVRRFW 3 MQQH+SF SI+ +RLTKLQV+RRFW Sbjct: 1 MQQHHSFTSILQTRLTKLQVIRRFW 25
>tr|Q259K2|Q259K2_ORYSA H0402C08.11 protein OS=Oryza sativa GN=H0402C08.11 PE=4 SV=1 Length = 923
Score = 42.7 bits (99), Expect = 0.011 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = -3
Query: 140 QGIRERSPTGTID-DSDIIEQLMQQHNSFASIMHSRLTKLQVVRRFW 3 +G + + T TI D D++ LM+QH F S SRLTKLQ+V + W Sbjct: 737 RGSSQAAETPTISSDEDVLSVLMEQHELFLSSTRSRLTKLQIVHQMW 783
>tr|Q259E8|Q259E8_ORYSA H0801D08.1 protein OS=Oryza sativa GN=H0801D08.1 PE=4 SV=1 Length = 909
Score = 42.7 bits (99), Expect = 0.011 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = -3
Query: 140 QGIRERSPTGTID-DSDIIEQLMQQHNSFASIMHSRLTKLQVVRRFW 3 +G + + T TI D D++ LM+QH F S SRLTKLQ+V + W Sbjct: 737 RGSSQAAETPTISSDEDVLSVLMEQHELFLSSTRSRLTKLQIVHQMW 783
>tr|Q0J906|Q0J906_ORYSJ Os04g0677700 protein OS=Oryza sativa subsp. japonica GN=Os04g0677700 PE=4 SV=1 Length = 923
Score = 42.7 bits (99), Expect = 0.011 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%) Frame = -3
Query: 140 QGIRERSPTGTI-DDSDIIEQLMQQHNSFASIMHSRLTKLQVVRRFW 3 +G + + T TI D D++ LM+QH F S SRLTKLQ+V + W Sbjct: 737 RGSSQAAETPTIASDEDVLSVLMEQHELFLSSTRSRLTKLQIVHQMW 783
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