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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915076
Clone id YMU001_000066_C02
Library
Length 360
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTACGGATGAGGATGTGAGCATTATACCTGGATATTGGGCAGTCAGCTGATCTACTGAGG
AGGATTGTAAGCGACTTCACAATCATATGGCCACGGTTTTATCAAATGATCTCAAAGCAA
GCAACTTGCAAAAGTGAGTTGGTGGCTTAATGCAGAGAGAGGCATGATTGGATATGATCG
GATCATCATTCCCTCATGAATTCTTGGCTCTTAATTACAACATAGGAGATGGGCATTATG
AGCATGCTTTCCGTGGCTCTACAATTCTAGAGAAAGTGGTTGTGCTTGAGCTTGGGACTG
CAAAGATTCATGAACTTTCTGCTCAATGGATTGCCGGCTTTTTAGAGCGATGTCCCAATT
■■Homology search results ■■ -
sp_hit_id Q9ZW88
Definition sp|Q9ZW88|FBL34_ARATH F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana
Align length 65
Score (bit) 52.0
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915076|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_C02.
         (360 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZW88|FBL34_ARATH F-box/LRR-repeat protein At1g67190 OS=Arab...    52   1e-11

>sp|Q9ZW88|FBL34_ARATH F-box/LRR-repeat protein At1g67190
           OS=Arabidopsis thaliana GN=At1g67190 PE=2 SV=1
          Length = 419

 Score = 52.0 bits (123), Expect(2) = 1e-11
 Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
 Frame = +3

Query: 168 LDMIGSSFPH-EFLALNYNIGDGHYEHAFRGSTILEKVVVLELGTAKIHELSAQWIAGFL 344
           ++ I + F H   L+L+Y++ DG   ++ +G+T LE V VLELG   I+++ + W+   L
Sbjct: 309 VESIAAGFSHLTHLSLSYDLKDGAAHYSLQGTTQLENVTVLELGWTVINDVFSIWVEELL 368

Query: 345 ERCPN 359
            RCPN
Sbjct: 369 RRCPN 373



 Score = 37.4 bits (85), Expect(2) = 1e-11
 Identities = 16/38 (42%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +1

Query: 22  LYLDIGQSADLLRRI-VSDFTIIWPRFYQMISKQATCK 132
           ++LDI ++++ L  + V+ FT++WP+FYQMIS+    K
Sbjct: 254 IHLDIMETSESLEVVDVNHFTMVWPKFYQMISRSQKLK 291
tr_hit_id A5B2U2
Definition tr|A5B2U2|A5B2U2_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 67
Score (bit) 52.4
E-value 3.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915076|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_C02.
         (360 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5B2U2|A5B2U2_VITVI Putative uncharacterized protein OS=Vitis...    52   3e-12
tr|A9TVZ3|A9TVZ3_PHYPA Predicted protein OS=Physcomitrella paten...    61   8e-12
tr|A5C1P7|A5C1P7_VITVI Putative uncharacterized protein (Chromos...    53   1e-10
tr|A7PPE7|A7PPE7_VITVI Chromosome chr8 scaffold_23, whole genome...    47   1e-10
tr|Q8RZ32|Q8RZ32_ORYSJ cDNA clone:J013132O07, full insert sequen...    52   1e-09
tr|A2WX70|A2WX70_ORYSI Putative uncharacterized protein OS=Oryza...    52   1e-09
tr|Q84VC4|Q84VC4_ORYSJ Putative uncharacterized protein (Fragmen...    52   1e-09
tr|A7QFC0|A7QFC0_VITVI Chromosome undetermined scaffold_87, whol...    40   0.076
tr|A8F9X3|A8F9X3_BACP2 Possible nitrilotriacetate monoxygenase O...    33   5.5  

>tr|A5B2U2|A5B2U2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_009884 PE=4 SV=1
          Length = 421

 Score = 52.4 bits (124), Expect(2) = 3e-12
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
 Frame = +3

Query: 168 LDMIGSSFPH-EFLALNYNIGDGHYEHAF--RGSTILEKVVVLELGTAKIHELSAQWIAG 338
           L+ I   FP    ++L+Y++ DG     +  +GST LE VVVLELG   +  L + W+AG
Sbjct: 309 LEAISVCFPRLTHVSLSYDLRDGDLRDGYGLQGSTHLENVVVLELGWTVMSNLFSPWVAG 368

Query: 339 FLERCPN 359
            ++RCPN
Sbjct: 369 LVDRCPN 375



 Score = 42.4 bits (98), Expect(2) = 3e-12
 Identities = 19/38 (50%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
 Frame = +1

Query: 22  LYLDIGQSADLLRRI-VSDFTIIWPRFYQMISKQATCK 132
           ++LDIG+S + L  + VS+FTI+WP+FY MIS+ +  K
Sbjct: 254 IHLDIGESTENLEVVDVSNFTIMWPKFYHMISRSSKLK 291


>tr|A9TVZ3|A9TVZ3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_198811 PE=4 SV=1
          Length = 421

 Score = 61.2 bits (147), Expect(2) = 8e-12
 Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
 Frame = +3

Query: 168 LDMIGSSFPH-EFLALNYNIGDGHYEHAFRGSTILEKVVVLELGTAKIHELSAQWIAGFL 344
           ++ I  SFP    LALNY + DG      RGS++LEKV  LELG++ I++L  QWI G L
Sbjct: 312 IETIAVSFPRLNRLALNYELDDGMLSQVLRGSSLLEKVFFLELGSSVINDLFVQWIGGVL 371

Query: 345 ERCPN 359
           +R P+
Sbjct: 372 QRSPS 376



 Score = 32.3 bits (72), Expect(2) = 8e-12
 Identities = 14/31 (45%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
 Frame = +1

Query: 28  LDIGQSADLLRRI-VSDFTIIWPRFYQMISK 117
           +DIG++++LL  + VSDF + W RF+ +IS+
Sbjct: 256 MDIGEASELLEDLDVSDFEMSWSRFFPIISR 286


>tr|A5C1P7|A5C1P7_VITVI Putative uncharacterized protein (Chromosome
           undetermined scaffold_87, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00037362001 PE=4 SV=1
          Length = 419

 Score = 52.8 bits (125), Expect(2) = 1e-10
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +3

Query: 168 LDMIGSSFPH-EFLALNYNIGDGHYEHAFRGSTILEKVVVLELGTAKIHELSAQWIAGFL 344
           L+ I   FP   +L+L Y++ D    +  +GS+ LE V+ +ELG   I+EL   W  G L
Sbjct: 309 LETIAVCFPQLSYLSLRYDLRDRVLHYGLQGSSHLENVIEMELGWTDINELFLDWAEGLL 368

Query: 345 ERCPN 359
           +RCPN
Sbjct: 369 QRCPN 373



 Score = 37.0 bits (84), Expect(2) = 1e-10
 Identities = 15/35 (42%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
 Frame = +1

Query: 22  LYLDIGQSADLLRRI-VSDFTIIWPRFYQMISKQA 123
           ++ DIG+S + L  + +++FTIIWP+FY+MI + +
Sbjct: 254 IHFDIGESLENLEVVDINNFTIIWPKFYKMILRSS 288


>tr|A7PPE7|A7PPE7_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021624001
           PE=4 SV=1
          Length = 416

 Score = 47.4 bits (111), Expect(2) = 1e-10
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = +3

Query: 168 LDMIGSSFPH-EFLALNYNIGDGHYEHAFRGSTILEKVVVLELGTAKIHELSAQWIAGFL 344
           L+ I   FP    ++LN ++ DG+     + ST LE VVVLELG   +  L + W+AG +
Sbjct: 309 LEAISVCFPRLTHVSLNGDLRDGY---GLQVSTHLENVVVLELGWTVMSNLFSPWVAGLV 365

Query: 345 ERCPN 359
           +RCPN
Sbjct: 366 DRCPN 370



 Score = 42.4 bits (98), Expect(2) = 1e-10
 Identities = 19/38 (50%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
 Frame = +1

Query: 22  LYLDIGQSADLLRRI-VSDFTIIWPRFYQMISKQATCK 132
           ++LDIG+S + L  + VS+FTI+WP+FY MIS+ +  K
Sbjct: 254 IHLDIGESTENLEVVDVSNFTIMWPKFYHMISRSSKLK 291


>tr|Q8RZ32|Q8RZ32_ORYSJ cDNA clone:J013132O07, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0489B03.15 PE=2 SV=1
          Length = 417

 Score = 51.6 bits (122), Expect(2) = 1e-09
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +3

Query: 171 DMIGSSFPH-EFLALNYNIGDGHYEHAFRGSTILEKVVVLELGTAKIHELSAQWIAGFLE 347
           + I  SFP    L+L+Y + DG   ++ +GS+ L+ V VLELG   I E    W+ G +E
Sbjct: 308 ETIAVSFPLLRHLSLSYELRDGLLHYSLQGSSPLDNVSVLELGWTVISEHFGPWVFGMIE 367

Query: 348 RCPN 359
           RCPN
Sbjct: 368 RCPN 371



 Score = 34.3 bits (77), Expect(2) = 1e-09
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +1

Query: 25  YLDIGQSADLLRRI-VSDFTIIWPRFYQMISKQATCK 132
           ++DIG+S D L  + VS+FTI+ P+ Y MIS+ +  +
Sbjct: 253 HMDIGESTDHLEVVDVSNFTIVRPKLYSMISRASNLR 289


>tr|A2WX70|A2WX70_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04512 PE=4 SV=1
          Length = 417

 Score = 51.6 bits (122), Expect(2) = 1e-09
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +3

Query: 171 DMIGSSFPH-EFLALNYNIGDGHYEHAFRGSTILEKVVVLELGTAKIHELSAQWIAGFLE 347
           + I  SFP    L+L+Y + DG   ++ +GS+ L+ V VLELG   I E    W+ G +E
Sbjct: 308 ETIAVSFPLLRHLSLSYELRDGLLHYSLQGSSPLDNVSVLELGWTVISEHFGPWVFGMIE 367

Query: 348 RCPN 359
           RCPN
Sbjct: 368 RCPN 371



 Score = 34.3 bits (77), Expect(2) = 1e-09
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +1

Query: 25  YLDIGQSADLLRRI-VSDFTIIWPRFYQMISKQATCK 132
           ++DIG+S D L  + VS+FTI+ P+ Y MIS+ +  +
Sbjct: 253 HMDIGESTDHLEVVDVSNFTIVRPKLYSMISRASNLR 289


>tr|Q84VC4|Q84VC4_ORYSJ Putative uncharacterized protein (Fragment)
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 288

 Score = 51.6 bits (122), Expect(2) = 1e-09
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +3

Query: 171 DMIGSSFPH-EFLALNYNIGDGHYEHAFRGSTILEKVVVLELGTAKIHELSAQWIAGFLE 347
           + I  SFP    L+L+Y + DG   ++ +GS+ L+ V VLELG   I E    W+ G +E
Sbjct: 179 ETIAVSFPLLRHLSLSYELRDGLLHYSLQGSSPLDNVSVLELGWTVISEHFGPWVFGMIE 238

Query: 348 RCPN 359
           RCPN
Sbjct: 239 RCPN 242



 Score = 34.3 bits (77), Expect(2) = 1e-09
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +1

Query: 25  YLDIGQSADLLRRI-VSDFTIIWPRFYQMISKQATCK 132
           ++DIG+S D L  + VS+FTI+ P+ Y MIS+ +  +
Sbjct: 124 HMDIGESTDHLEVVDVSNFTIVRPKLYSMISRASNLR 160


>tr|A7QFC0|A7QFC0_VITVI Chromosome undetermined scaffold_87, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00037361001 PE=4 SV=1
          Length = 332

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 17/36 (47%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
 Frame = +1

Query: 19  ALYLDIGQSADLLRRI-VSDFTIIWPRFYQMISKQA 123
           +++ DIG++ + L  I +++FTIIWP+FYQMIS+ +
Sbjct: 237 SIHFDIGETLENLLVIDINNFTIIWPKFYQMISRSS 272


>tr|A8F9X3|A8F9X3_BACP2 Possible nitrilotriacetate monoxygenase
           OS=Bacillus pumilus (strain SAFR-032) GN=yxeK PE=4 SV=1
          Length = 441

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +3

Query: 9   EDVSIIPGYWAVS*STEEDCKRLHNHMATVLSNDLKASNLQK*VGGL 149
           EDVSI+PG + +   TEE+ K  +  +  ++  ++  S LQ  +GG+
Sbjct: 264 EDVSIMPGIFPIIADTEEEAKAKYEELQELIVPEIGLSILQNYLGGI 310