BP915085
Clone id YMU001_000066_C12
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ATGGACATCTGTATGATGGAACTAGAAGCATAGGAAGCAAGTATATCAAATCCTCATGCT
TTCGTTACTCTTCAAAGGATTCGCCGGTCTAGCAATTTACATACTCCTCTCACCTGGGAG
CCTCAATGTAAATCAGACGTCGAATTGAGTATTTTGTTTTAGGGCATAGCCAAAGCTAGC
GTTCTTAGCTAAGGACGTAAGGTTAGCTATACCCATTAATTTTACATGAAAGGAAGTAAC
CACGGGGCACGTTGTCCTCACCGTCTCGGCCATTCCATCGATGTTTTTGGACTACCACTA
GTAGAACCATCATCACCACTGTTTTCAAATTTCTCAACCATGAAAGGCAAGGAGTGATTG
TAGACCTTGCTGCAACCATCATCTAATCCGCCTATCATGGGAGCTGCTACATTCAAATCC
AAAAATCTGTGCACCTTAACATCAGGCTTGACATCAACCATGGGCTCGCAATTGACACCA
TTTGTTGGTCTATGCGAATCATCCCCTCCATGAAGCTCCTCCATTTC
■■Homology search results ■■ -
sp_hit_id P22893
Definition sp|P22893|TTP_MOUSE Tristetraproline OS=Mus musculus
Align length 84
Score (bit) 30.0
E-value 7.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915085|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_C12.
(527 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P22893|TTP_MOUSE Tristetraproline OS=Mus musculus GN=Zfp36 PE... 30 7.1
sp|Q504C1|LRIT2_DANRE Leucine-rich repeat, immunoglobulin-like d... 30 7.1

>sp|P22893|TTP_MOUSE Tristetraproline OS=Mus musculus GN=Zfp36 PE=1
SV=1
Length = 319

Score = 30.0 bits (66), Expect = 7.1
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 16/84 (19%)
Frame = +1

Query: 199 KVSYTH*FYMKGS-NHGARC---------------PHRLGHSIDVFGLPLVEPSSPLFSN 330
K H FY++G +G+RC PH L SI GLP SSP
Sbjct: 135 KTELCHKFYLQGRCPYGSRCHFIHNPTEDLALPGQPHVLRQSISFSGLPSGRRSSPPPPG 194

Query: 331 FSTMKGKE*L*TLLQPSSNPPIMG 402
FS G PSS+PP G
Sbjct: 195 FS---GPSLSSCSFSPSSSPPPPG 215


>sp|Q504C1|LRIT2_DANRE Leucine-rich repeat, immunoglobulin-like
domain and transmembrane domain-containing protein 2
OS=Danio rerio GN=lrit2 PE=2 SV=2
Length = 561

Score = 30.0 bits (66), Expect = 7.1
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2

Query: 169 LCPKTKYSIRRLIYIEAPR*EEYVNC*TGESFEE*RKHEDLIYLLPMLL 23
L P TKY I + +APR + + TG F E + E LI+++ ++L
Sbjct: 422 LLPATKYEICVTLKNQAPRIGQCIVFVTGSDFNEMEQREKLIHIVVIVL 470


tr_hit_id B4JCU0
Definition tr|B4JCU0|B4JCU0_DROGR GH10633 OS=Drosophila grimshawi
Align length 70
Score (bit) 34.3
E-value 4.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915085|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_C12.
(527 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4JCU0|B4JCU0_DROGR GH10633 OS=Drosophila grimshawi GN=GH1063... 34 4.0
tr|B7P794|B7P794_IXOSC Microtubule-associated protein CP224, put... 33 8.8

>tr|B4JCU0|B4JCU0_DROGR GH10633 OS=Drosophila grimshawi GN=GH10633
PE=4 SV=1
Length = 786

Score = 34.3 bits (77), Expect = 4.0
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1

Query: 40 SISNPHAFV----TLQRIRRSSNLHTPLTWEPQCKSDVELSILF*GIAKASVLS*GRKVS 207
SI NPH F +Q +++ NL+ L+ P+ KSD + LF + + L R +
Sbjct: 205 SIRNPHMFTFDPALMQELQQLRNLNLKLSQPPEHKSDKQQQRLFISMQQLEQLRLSRATN 264

Query: 208 YTH*FYMKGS 237
Y + +KGS
Sbjct: 265 YLNATMLKGS 274


>tr|B7P794|B7P794_IXOSC Microtubule-associated protein CP224, putative
(Fragment) OS=Ixodes scapularis GN=IscW_ISCW000916 PE=4
SV=1
Length = 1763

Score = 33.1 bits (74), Expect = 8.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1

Query: 229 KGSNHGARCPHRLGHSIDVFGLPLVEPSSPL 321
K + A C LGH ++VFG+ + EPS P+
Sbjct: 1325 KNARQRAECLEELGHLVEVFGVSVCEPSPPV 1355