BP915092 |
Clone id |
YMU001_000066_D07 |
Library |
YMU01 |
Length |
503 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000066_D07. |
Accession |
BP915092 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL3631Contig1 |
Sequence |
CTTCTGCGAGTAAATCTGTGTAAGATAAAAGAGCACTGAGAGCTCCTGCTGCTAGCTCAG ACGCGAAAATGGAGTCTTTGAGCTGCTCCACAGAGCCTTTGGCCAAGCGACCCACATCTT GATCGGTGTCTCTGGACTTAAAGATGTTCTTCTTCTTTTCTGTCAAAAGCACATTACACC TTGCATATACATCCTTTAAGCGTTCAGCATCCTTACTCTTGGTATTTTCTTGAGGAATGA CACACTCTTTACAGCCCAGCGCAATCATCGCTGATTCCAGATTGGTGTAATGATCATCAT CCAAAAACTCTGTCAAGCCCATACTTCTCTTAGTCAGGTTCACAAATGCCATGCCCACAA GTCTTTCATTTTCATGAATGCTGGCTTGCACTGCCATGACAACAGGTGTGTCCTGCATGT CACTAGTGGCAAACAAAACATCTTCAAAACTGCCAATGCGCCCAGGTGTCCCTGTCTTGA TCAAACTCCAGTTAGATCCACTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O24617 |
Definition |
sp|O24617|MSH2_ARATH DNA mismatch repair protein Msh2 OS=Arabidopsis thaliana |
Align length |
145 |
Score (bit) |
178.0 |
E-value |
1.0e-44 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q45RT1 |
Definition |
tr|Q45RT1|Q45RT1_PHYPA DNA mismatch repair protein MSH2 OS=Physcomitrella patens |
Align length |
168 |
Score (bit) |
192.0 |
E-value |
8.0e-48 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915092|Adiantum capillus-veneris mRNA, clone: YMU001_000066_D07. (503 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q45RT1|Q45RT1_PHYPA DNA mismatch repair protein MSH2 OS=Physc... 192 8e-48 tr|A9TKK7|A9TKK7_PHYPA Predicted protein OS=Physcomitrella paten... 192 8e-48 tr|A7PGN8|A7PGN8_VITVI Chromosome chr17 scaffold_16, whole genom... 183 5e-45 tr|Q6DQL7|Q6DQL7_PETHY DNA mismatch repair protein OS=Petunia hy... 177 2e-43 tr|Q0DJI9|Q0DJI9_ORYSJ Os05g0274200 protein OS=Oryza sativa subs... 172 1e-41 tr|B8AW22|B8AW22_ORYSI Putative uncharacterized protein OS=Oryza... 172 1e-41 tr|A3B234|A3B234_ORYSJ Putative uncharacterized protein OS=Oryza... 172 1e-41 tr|A4RQJ8|A4RQJ8_OSTLU Predicted protein OS=Ostreococcus lucimar... 121 2e-26 tr|Q00ZW2|Q00ZW2_OSTTA Mismatch repair ATPase MSH4 (MutS family)... 117 2e-25 tr|A7T909|A7T909_NEMVE Predicted protein (Fragment) OS=Nematoste... 112 1e-23 tr|B2DD05|B2DD05_MESAU Mismatch repair protein (Fragment) OS=Mes... 109 8e-23 tr|B1WBQ7|B1WBQ7_RAT Msh2 protein (MutS homolog 2) (E. coli) OS=... 108 2e-22 tr|Q80V79|Q80V79_MOUSE MutS homolog 2 (E. coli) OS=Mus musculus ... 106 5e-22 tr|Q3TZI5|Q3TZI5_MOUSE Putative uncharacterized protein OS=Mus m... 106 5e-22 tr|Q5R4H9|Q5R4H9_PONAB Putative uncharacterized protein DKFZp459... 106 5e-22 tr|Q53RU4|Q53RU4_HUMAN Putative uncharacterized protein MSH2 (Fr... 106 5e-22 tr|Q53GS1|Q53GS1_HUMAN MutS homolog 2 variant (Fragment) OS=Homo... 106 5e-22 tr|Q53FK0|Q53FK0_HUMAN MutS homolog 2 variant (Fragment) OS=Homo... 106 5e-22 tr|B4E2Z2|B4E2Z2_HUMAN cDNA FLJ51193, highly similar to DNA mism... 106 5e-22 tr|Q4PA38|Q4PA38_USTMA Putative uncharacterized protein OS=Ustil... 105 9e-22 tr|A8QA12|A8QA12_MALGO Putative uncharacterized protein OS=Malas... 103 5e-21 tr|Q76FQ4|Q76FQ4_CHICK Putative uncharacterized protein cMSH2 (F... 102 1e-20 tr|B3RWE3|B3RWE3_TRIAD Putative uncharacterized protein OS=Trich... 102 1e-20 tr|Q5KN74|Q5KN74_CRYNE DNA mismatch repair protein MSH2, putativ... 100 3e-20 tr|A6S313|A6S313_BOTFB Putative uncharacterized protein OS=Botry... 96 1e-18 tr|Q1E676|Q1E676_COCIM Putative uncharacterized protein OS=Cocci... 94 4e-18 tr|Q16F93|Q16F93_AEDAE DNA mismatch repair protein spellchecker ... 93 6e-18 tr|Q0MR17|Q0MR17_PENMA MSH2-like protein OS=Penicillium marneffe... 93 6e-18 tr|B6Q7H2|B6Q7H2_PENMA DNA mismatch repair protein Msh2, putativ... 93 6e-18 tr|B6M6D1|B6M6D1_BRAFL Putative uncharacterized protein OS=Branc... 93 8e-18
>tr|Q45RT1|Q45RT1_PHYPA DNA mismatch repair protein MSH2 OS=Physcomitrella patens PE=3 SV=1 Length = 951
Score = 192 bits (488), Expect = 8e-48 Identities = 91/168 (54%), Positives = 128/168 (76%), Gaps = 1/168 (0%) Frame = -2
Query: 502 SGSNWSLIKTGTPGRIGSFEDVLFATSDMQDTPVVMAVQASIHENERLVGMAFVNLTKRS 323 +GS W L+++G+PG++GSFE+VLFA+++MQ+TPVVMAV + ++ER VG+AFV++TKR Sbjct: 113 TGSKWQLVRSGSPGKLGSFEEVLFASNEMQETPVVMAVNITTRQSERCVGIAFVDMTKRQ 172
Query: 322 MGLTEFLDDDHYTNLESAMIALGCKECVIPQEN-TKSKDAERLKDVYARCNVLLTEKKKN 146 +G+TEFLDDD YT+LESAM+AL C+EC+IP KS D +L+DV ARCNVL+TEKKK+ Sbjct: 173 LGMTEFLDDDLYTSLESAMVALSCRECIIPMPTAAKSPDDRKLRDVMARCNVLVTEKKKS 232
Query: 145 IFKSRDTDQDVGRLAKGSVEQLKDSIFXXXXXXXXXXXXXSYTDLLAE 2 F+SRD +QD+GRL KG EQ K+ + +YT+LL++ Sbjct: 233 DFRSRDVEQDLGRLVKGPAEQHKELVAASDLAAAALAALLTYTELLSD 280
>tr|A9TKK7|A9TKK7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_223185 PE=3 SV=1 Length = 956
Score = 192 bits (488), Expect = 8e-48 Identities = 91/168 (54%), Positives = 128/168 (76%), Gaps = 1/168 (0%) Frame = -2
Query: 502 SGSNWSLIKTGTPGRIGSFEDVLFATSDMQDTPVVMAVQASIHENERLVGMAFVNLTKRS 323 +GS W L+++G+PG++GSFE+VLFA+++MQ+TPVVMAV + ++ER VG+AFV++TKR Sbjct: 113 TGSKWQLVRSGSPGKLGSFEEVLFASNEMQETPVVMAVNITTRQSERCVGIAFVDMTKRQ 172
Query: 322 MGLTEFLDDDHYTNLESAMIALGCKECVIPQEN-TKSKDAERLKDVYARCNVLLTEKKKN 146 +G+TEFLDDD YT+LESAM+AL C+EC+IP KS D +L+DV ARCNVL+TEKKK+ Sbjct: 173 LGMTEFLDDDLYTSLESAMVALSCRECIIPMPTAAKSPDDRKLRDVMARCNVLVTEKKKS 232
Query: 145 IFKSRDTDQDVGRLAKGSVEQLKDSIFXXXXXXXXXXXXXSYTDLLAE 2 F+SRD +QD+GRL KG EQ K+ + +YT+LL++ Sbjct: 233 DFRSRDVEQDLGRLVKGPAEQHKELVAASDLAAAALAALLTYTELLSD 280
>tr|A7PGN8|A7PGN8_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017625001 PE=3 SV=1 Length = 802
Score = 183 bits (464), Expect = 5e-45 Identities = 85/167 (50%), Positives = 120/167 (71%) Frame = -2
Query: 502 SGSNWSLIKTGTPGRIGSFEDVLFATSDMQDTPVVMAVQASIHENERLVGMAFVNLTKRS 323 SGSNW L+K+GTPG +GSFEDVLFA ++MQD+PV++A+ + EN VG+ FV+LT+R Sbjct: 74 SGSNWRLVKSGTPGNLGSFEDVLFANNEMQDSPVIVALFPNFRENGCTVGLGFVDLTRRV 133
Query: 322 MGLTEFLDDDHYTNLESAMIALGCKECVIPQENTKSKDAERLKDVYARCNVLLTEKKKNI 143 +GL EFLDD +TN+ESA++ALGC+EC++P E+ KS + L D +RC V+LTE+K+ Sbjct: 134 LGLAEFLDDSQFTNVESALVALGCRECLLPSESAKSSETRTLHDALSRCGVMLTERKRTE 193
Query: 142 FKSRDTDQDVGRLAKGSVEQLKDSIFXXXXXXXXXXXXXSYTDLLAE 2 FK+RD QD+GRL KGS+E ++D + SY +LLA+ Sbjct: 194 FKARDLVQDLGRLVKGSIEPVRDLVSGFELAPGALGLLLSYAELLAD 240
>tr|Q6DQL7|Q6DQL7_PETHY DNA mismatch repair protein OS=Petunia hybrida GN=MSH2 PE=2 SV=1 Length = 942
Score = 177 bits (450), Expect = 2e-43 Identities = 83/167 (49%), Positives = 117/167 (70%) Frame = -2
Query: 502 SGSNWSLIKTGTPGRIGSFEDVLFATSDMQDTPVVMAVQASIHENERLVGMAFVNLTKRS 323 SGSNW L+K GTPG +GSFED+LFA ++MQD+PV++A+ + +N +G+ +V++TKR Sbjct: 110 SGSNWRLVKNGTPGVLGSFEDILFANNEMQDSPVIVALAPNSSQNGCTIGLGYVDITKRI 169
Query: 322 MGLTEFLDDDHYTNLESAMIALGCKECVIPQENTKSKDAERLKDVYARCNVLLTEKKKNI 143 +GL EFLDD H+TNLESA++ALGC+EC++P E KS + L D +RC V++TE+KK Sbjct: 170 LGLAEFLDDSHFTNLESALVALGCRECLVPAETGKSSEYRPLYDAISRCGVMVTERKKAE 229
Query: 142 FKSRDTDQDVGRLAKGSVEQLKDSIFXXXXXXXXXXXXXSYTDLLAE 2 FK RD QD+GRL KGS E ++D + SY +LLA+ Sbjct: 230 FKGRDLVQDLGRLVKGSTEPVRDLVSGFECAAGALGCILSYAELLAD 276
>tr|Q0DJI9|Q0DJI9_ORYSJ Os05g0274200 protein OS=Oryza sativa subsp. japonica GN=Os05g0274200 PE=3 SV=1 Length = 942
Score = 172 bits (435), Expect = 1e-41 Identities = 84/167 (50%), Positives = 116/167 (69%) Frame = -2
Query: 502 SGSNWSLIKTGTPGRIGSFEDVLFATSDMQDTPVVMAVQASIHENERLVGMAFVNLTKRS 323 SGS+W L K+GTPG IGSFED+LFA +DMQD+PV +A+ E + VG++FV+LT R Sbjct: 112 SGSSWRLTKSGTPGNIGSFEDILFANNDMQDSPVTVALFPVFQEGQLYVGLSFVDLTNRK 171
Query: 322 MGLTEFLDDDHYTNLESAMIALGCKECVIPQENTKSKDAERLKDVYARCNVLLTEKKKNI 143 +GL+EF +D +TN+ESA++ALGCKEC++P + KS D + L+D CNVLLTE+KK Sbjct: 172 LGLSEFPEDSRFTNVESALVALGCKECLLPADCEKSIDLKPLQDAITNCNVLLTERKKVE 231
Query: 142 FKSRDTDQDVGRLAKGSVEQLKDSIFXXXXXXXXXXXXXSYTDLLAE 2 FKSRD QD+GR+ +G VE ++D + SY +LLA+ Sbjct: 232 FKSRDLVQDLGRIIRGPVEPVRDLVSQFDYALGALGALVSYAELLAD 278
>tr|B8AW22|B8AW22_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19262 PE=4 SV=1 Length = 942
Score = 172 bits (435), Expect = 1e-41 Identities = 84/167 (50%), Positives = 116/167 (69%) Frame = -2
Query: 502 SGSNWSLIKTGTPGRIGSFEDVLFATSDMQDTPVVMAVQASIHENERLVGMAFVNLTKRS 323 SGS+W L K+GTPG IGSFED+LFA +DMQD+PV +A+ E + VG++FV+LT R Sbjct: 112 SGSSWRLTKSGTPGNIGSFEDILFANNDMQDSPVTVALFPVFQEGQLYVGLSFVDLTNRK 171
Query: 322 MGLTEFLDDDHYTNLESAMIALGCKECVIPQENTKSKDAERLKDVYARCNVLLTEKKKNI 143 +GL+EF +D +TN+ESA++ALGCKEC++P + KS D + L+D CNVLLTE+KK Sbjct: 172 LGLSEFPEDSRFTNVESALVALGCKECLLPADCEKSIDLKPLQDAITNCNVLLTERKKVE 231
Query: 142 FKSRDTDQDVGRLAKGSVEQLKDSIFXXXXXXXXXXXXXSYTDLLAE 2 FKSRD QD+GR+ +G VE ++D + SY +LLA+ Sbjct: 232 FKSRDLVQDLGRIIRGPVEPVRDLVSQFDYALGALGALVSYAELLAD 278
>tr|A3B234|A3B234_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_017106 PE=3 SV=1 Length = 905
Score = 172 bits (435), Expect = 1e-41 Identities = 84/167 (50%), Positives = 116/167 (69%) Frame = -2
Query: 502 SGSNWSLIKTGTPGRIGSFEDVLFATSDMQDTPVVMAVQASIHENERLVGMAFVNLTKRS 323 SGS+W L K+GTPG IGSFED+LFA +DMQD+PV +A+ E + VG++FV+LT R Sbjct: 112 SGSSWRLTKSGTPGNIGSFEDILFANNDMQDSPVTVALFPVFQEGQLYVGLSFVDLTNRK 171
Query: 322 MGLTEFLDDDHYTNLESAMIALGCKECVIPQENTKSKDAERLKDVYARCNVLLTEKKKNI 143 +GL+EF +D +TN+ESA++ALGCKEC++P + KS D + L+D CNVLLTE+KK Sbjct: 172 LGLSEFPEDSRFTNVESALVALGCKECLLPADCEKSIDLKPLQDAITNCNVLLTERKKVE 231
Query: 142 FKSRDTDQDVGRLAKGSVEQLKDSIFXXXXXXXXXXXXXSYTDLLAE 2 FKSRD QD+GR+ +G VE ++D + SY +LLA+ Sbjct: 232 FKSRDLVQDLGRIIRGPVEPVRDLVSQFDYALGALGALVSYAELLAD 278
>tr|A4RQJ8|A4RQJ8_OSTLU Predicted protein OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28688 PE=3 SV=1 Length = 936
Score = 121 bits (304), Expect = 2e-26 Identities = 55/135 (40%), Positives = 89/135 (65%) Frame = -2
Query: 490 WSLIKTGTPGRIGSFEDVLFATSDMQDTPVVMAVQASIHENERLVGMAFVNLTKRSMGLT 311 W+ +K+ +PG++ +FED LF +++M D VV AV+ + VG+A+ N T R +G Sbjct: 119 WTCVKSASPGKLQAFEDELFRSNEMSDASVVCAVRVANGN----VGVAYANTTTRELGAC 174
Query: 310 EFLDDDHYTNLESAMIALGCKECVIPQENTKSKDAERLKDVYARCNVLLTEKKKNIFKSR 131 F+DD+ Y LES + +G KECV+P+E T++ + RL+DV +RC L TE++ F ++ Sbjct: 175 AFVDDEQYCTLESVLCQIGVKECVVPKEGTETPEGRRLRDVVSRCGALATERQARDFDAQ 234
Query: 130 DTDQDVGRLAKGSVE 86 D + D+GRL +G+VE Sbjct: 235 DLENDLGRLVRGNVE 249
>tr|Q00ZW2|Q00ZW2_OSTTA Mismatch repair ATPase MSH4 (MutS family) (ISS) OS=Ostreococcus tauri GN=Ot10g02130 PE=3 SV=1 Length = 913
Score = 117 bits (294), Expect = 2e-25 Identities = 58/135 (42%), Positives = 85/135 (62%) Frame = -2
Query: 490 WSLIKTGTPGRIGSFEDVLFATSDMQDTPVVMAVQASIHENERLVGMAFVNLTKRSMGLT 311 W+L KT +PGR +FE+ LF +++M D VV AV+A+ VG+A+VN T R +G Sbjct: 108 WTLSKTASPGRTQAFEEELFRSNEMSDAAVVCAVRATSGGG---VGVAYVNATTRELGAC 164
Query: 310 EFLDDDHYTNLESAMIALGCKECVIPQENTKSKDAERLKDVYARCNVLLTEKKKNIFKSR 131 F+DD+ + LES + +G KECV+P+E ++ + RL+DV ARC L TE+ F Sbjct: 165 AFVDDEQFCTLESVLCQMGAKECVVPKEGLETPEGRRLRDVVARCGALATERPSREFDVL 224
Query: 130 DTDQDVGRLAKGSVE 86 D + D+ RL KG+VE Sbjct: 225 DLESDLDRLIKGNVE 239
>tr|A7T909|A7T909_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g224004 PE=4 SV=1 Length = 273
Score = 112 bits (280), Expect = 1e-23 Identities = 53/135 (39%), Positives = 88/135 (65%) Frame = -2
Query: 502 SGSNWSLIKTGTPGRIGSFEDVLFATSDMQDTPVVMAVQASIHENERLVGMAFVNLTKRS 323 + S W L+ G+PG + FED+LF S+M + VVMA++ +R+VG+A+ ++ R Sbjct: 128 NSSAWELVAKGSPGNLQQFEDILFGNSEMSASAVVMAIKLGTVTGQRVVGVAYADVASRK 187
Query: 322 MGLTEFLDDDHYTNLESAMIALGCKECVIPQENTKSKDAERLKDVYARCNVLLTEKKKNI 143 +G+ EF D+D ++NLE+ ++ LG KEC++ ++ S DA + +V R N+L+TE+KK Sbjct: 188 LGVCEFADNDQFSNLEALIVQLGPKECLMASTDS-SGDAAKTHEVVKRSNILVTERKKVE 246
Query: 142 FKSRDTDQDVGRLAK 98 F ++D QD+ RL K Sbjct: 247 FSNKDIVQDLNRLLK 261
|