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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915093
Clone id YMU001_000066_D08
Library
Length 430
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_D08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTTGAAGGGCGAGATATTTCATTGAGAAAAAGTTTACTAAATGTATGAGGTCTCATGAG
TCAGTCTAATTGAAACTCATGTGTGCTTCGATGAGGTTGAGGAGTGGATCAGGGCCATTA
TAAATACGTTTGATTGGAAAATTGTGCAGGGTTGCTGATAGGCATTCAACCACCTCTTTT
TGCCCTGCAGAGCAGTAAGCTAAAAACATCTTTCTGGTGGCTAAGGTAGCCAATCTACTA
CGGCATTCGGAAACAAAAGGGTGTGCCCTTTTTTTGCCTCGCCAAAGGCTATGACATTGC
GTTGCAGAGGTCGTAGGAAGTTCGAAATGAGGACGCCATACCATCCATGGTAGATGGAAA
CTGGGATTCTCTTAAGGCTCCCCTGTTGACCCTCGAAAGGTACTCTTGGACCTCCCACTA
TGCAGGTGTA
■■Homology search results ■■ -
sp_hit_id Q9JI93
Definition sp|Q9JI93|A4GAT_RAT Lactosylceramide 4-alpha-galactosyltransferase OS=Rattus norvegicus
Align length 78
Score (bit) 30.0
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915093|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_D08.
         (430 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JI93|A4GAT_RAT Lactosylceramide 4-alpha-galactosyltransfera...    30   4.1  
sp|Q9N291|A4GAT_PANTR Lactosylceramide 4-alpha-galactosyltransfe...    30   4.1  
sp|Q9NPC4|A4GAT_HUMAN Lactosylceramide 4-alpha-galactosyltransfe...    30   4.1  
sp|Q9N290|A4GAT_GORGO Lactosylceramide 4-alpha-galactosyltransfe...    30   4.1  
sp|Q57639|Y175_METJA Uncharacterized protein MJ0175 OS=Methanoca...    29   9.1  
sp|Q492V0|SYFB_BLOPB Phenylalanyl-tRNA synthetase beta chain OS=...    29   9.1  
sp|Q5BK39|CP054_RAT Transmembrane protein C16orf54 homolog OS=Ra...    29   9.1  
sp|Q8C708|CP054_MOUSE Transmembrane protein C16orf54 homolog OS=...    29   9.1  
sp|Q9N289|A4GAT_PONPY Lactosylceramide 4-alpha-galactosyltransfe...    29   9.1  
sp|P22648|FAS2_SCHAM Fasciclin-2 OS=Schistocerca americana GN=FA...    29   9.3  

>sp|Q9JI93|A4GAT_RAT Lactosylceramide 4-alpha-galactosyltransferase
           OS=Rattus norvegicus GN=A4galt PE=1 SV=1
          Length = 360

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
 Frame = -3

Query: 425 LHSGRSKSTFRGSTGEP*ENPSFHLPWMVWRPHFE-------LPTTSATQCHSLWRGKKR 267
           +HS +     RG T  P E   + +PW  W+ +FE           +AT    +W  K +
Sbjct: 271 IHSLKESRACRGVTALPPE-AFYPIPWQNWKKYFEDVSPEELAQLLNATYAVHVWNKKSQ 329

Query: 266 AHPFVSECRSRLATLATR 213
                +  R+ LA L  R
Sbjct: 330 GTHLEATSRALLAQLHAR 347


>sp|Q9N291|A4GAT_PANTR Lactosylceramide
           4-alpha-galactosyltransferase OS=Pan troglodytes
           GN=A4GALT PE=3 SV=1
          Length = 353

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = -3

Query: 395 RGSTGEP*ENPSFHLPWMVWRPHF------ELP-TTSATQCHSLWRGKKRAHPFVSECRS 237
           RG T  P E   + +PW  W+ +F      ELP   SAT    +W  K +   F +  R+
Sbjct: 274 RGVTTLPPE-AFYPIPWQDWKKYFEDINPEELPRLLSATYAVHVWNKKSQGTRFEATSRA 332

Query: 236 RLATLATR 213
            LA L  R
Sbjct: 333 LLAQLHAR 340


>sp|Q9NPC4|A4GAT_HUMAN Lactosylceramide
           4-alpha-galactosyltransferase OS=Homo sapiens GN=A4GALT
           PE=2 SV=1
          Length = 353

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = -3

Query: 395 RGSTGEP*ENPSFHLPWMVWRPHF------ELP-TTSATQCHSLWRGKKRAHPFVSECRS 237
           RG T  P E   + +PW  W+ +F      ELP   SAT    +W  K +   F +  R+
Sbjct: 274 RGVTTLPPE-AFYPIPWQDWKKYFEDINPEELPRLLSATYAVHVWNKKSQGTRFEATSRA 332

Query: 236 RLATLATR 213
            LA L  R
Sbjct: 333 LLAQLHAR 340


>sp|Q9N290|A4GAT_GORGO Lactosylceramide
           4-alpha-galactosyltransferase (Fragment) OS=Gorilla
           gorilla gorilla GN=A4GALT PE=3 SV=1
          Length = 327

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = -3

Query: 395 RGSTGEP*ENPSFHLPWMVWRPHF------ELPTT-SATQCHSLWRGKKRAHPFVSECRS 237
           RG T  P E   + +PW  W+ +F      ELP   SAT    +W  K +   F +  R+
Sbjct: 248 RGVTTLPPE-AFYPIPWQDWKKYFEDINPEELPRLFSATYAVHVWNKKSQGTRFEATSRA 306

Query: 236 RLATLATR 213
            LA L  R
Sbjct: 307 LLAQLHAR 314


>sp|Q57639|Y175_METJA Uncharacterized protein MJ0175
           OS=Methanocaldococcus jannaschii GN=MJ0175 PE=4 SV=1
          Length = 222

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 254 VSECRSRLATLATRKMFLAYCSAGQKEVVECLSATLHNFPIK 129
           +SE   +L +LAT   F+ Y S  Q+E VE LS  +  F  K
Sbjct: 72  ISEKIKKLNSLATFPEFVGYLSTPQQEFVEALSLYMIKFDNK 113


>sp|Q492V0|SYFB_BLOPB Phenylalanyl-tRNA synthetase beta chain
           OS=Blochmannia pennsylvanicus (strain BPEN) GN=pheT PE=3
           SV=1
          Length = 797

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 176 EVVEC-LSATLHNFPIKRIYNGPDPLLNLI 90
           E+VEC +   LHN  I ++ NG + LLN++
Sbjct: 49  EIVECKMHPNLHNVWITKVNNGDNKLLNIV 78


>sp|Q5BK39|CP054_RAT Transmembrane protein C16orf54 homolog
           OS=Rattus norvegicus PE=2 SV=1
          Length = 225

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 377 P*ENPSFHLPWMVWRPHFEL---PTTSATQCHSLWRG 276
           P  +PS   P +VWRP  EL   PT+SA +    W G
Sbjct: 62  PQPDPSQRAPTLVWRPGGELWIEPTSSARERSEDWYG 98


>sp|Q8C708|CP054_MOUSE Transmembrane protein C16orf54 homolog OS=Mus
           musculus PE=2 SV=1
          Length = 225

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 377 P*ENPSFHLPWMVWRPHFEL---PTTSATQCHSLWRG 276
           P  +PS   P +VWRP  EL   PT+SA +    W G
Sbjct: 62  PQPDPSQRAPTLVWRPGGELWIEPTSSARERSEDWYG 98


>sp|Q9N289|A4GAT_PONPY Lactosylceramide
           4-alpha-galactosyltransferase (Fragment) OS=Pongo
           pygmaeus GN=A4GALT PE=3 SV=1
          Length = 218

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = -3

Query: 395 RGSTGEP*ENPSFHLPWMVWRPHF------ELP-TTSATQCHSLWRGKKRAHPFVSECRS 237
           RG T  P E   + +PW  W+ +F      ELP   +AT    +W  K +   F +  R+
Sbjct: 139 RGVTTLPPE-AFYPIPWQDWKKYFEDISPEELPRLLNATYAVHVWNKKSQGTRFEATSRA 197

Query: 236 RLATLATR 213
            LA L  R
Sbjct: 198 LLAQLHAR 205


>sp|P22648|FAS2_SCHAM Fasciclin-2 OS=Schistocerca americana GN=FAS2
           PE=1 SV=2
          Length = 898

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -1

Query: 271 KGHTLLFPNAVVDWLP*PPERCF*LTALQGKKRWLNAYQQPCTIFQSN 128
           K  TLL P+  VDWLP P E+   LT +  + R  +     C+   SN
Sbjct: 74  KNPTLLKPHIFVDWLPPPGEKV--LTLMIPELREADTGTYTCSALYSN 119
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915093|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_D08.
         (430 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******