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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915098
Clone id YMU001_000066_E02
Library
Length 480
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGACACCCTCCTCGCTCTCTGCCCCCCTCTCCTAGTCCGCGTTATCTGCACGCCTCCTCC
ATCGCCAAAGCTTCTTAACCTTGTCCAGCCTGCGCTTCGTCTTCTCCCGATCATCCTGCC
TGCTCTTCGTCTCCTCCCGATCGTCCAGCCTGGGCTTCGTCCGTCCTCCCCCACCATCGC
GAATGTTTTAATGGAGTCCTCCGGCAGTGACAGCGATTCCTCCAGCAGTAGTAGTTTCCG
TTACCTGCTCGACCTTCTCTACGGTATTGAAGACGTTCGACCAAACGGAGGCATCGTCAA
GTTCCAGAACGCTGTCTACTCAAACTGCCTAAGGAAGCCATCCTGACATCGCTTCTGAGC
TCAACAGTTAAGGAAACGTTATCTAGTATTATAGTTTTGCAATAAGATTGTATAGTGTTC
TGCCTTTCCTCCACTTCAGTACGCCAGCCATTACCTACAGCAATCAACAATGTCGGTAAT
■■Homology search results ■■ -
sp_hit_id Q8L716
Definition sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
Align length 33
Score (bit) 31.6
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915098|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_E02.
         (480 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Ar...    32   1.9  
sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helic...    32   1.9  
sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=A...    30   7.4  
sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=A...    29   9.6  
sp|Q9R9N1|LPSE_RHIME Lipopolysaccharide core biosynthesis glycos...    29   9.6  

>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B
           OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2
          Length = 589

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 187 NIRDGGGGRTKPRLDDREETKSRQDDREKTKRR 89
           N RD  G + + R  DR+  KSR  DREK++ R
Sbjct: 56  NGRDKDGNKDRDREKDRDREKSRDRDREKSRDR 88


>sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helicase
           prp5 OS=Emericella nidulans GN=prp5 PE=3 SV=1
          Length = 1173

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -3

Query: 163 RTKPRLDDREETKSRQDDREKTKRRLDKVKKLXXXXXRADNAD*ERGAE 17
           R + R  DR+    R D R++ +RR D    L     R D+ D  RGAE
Sbjct: 101 RRRSRSRDRDYRSRRDDSRDRVRRRTDDSADLKRKSRRDDSRDRTRGAE 149


>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21
           OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1
          Length = 733

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 181 RDGGGGRTKPRLDDREETKSRQDDREKTKRRLDK 80
           RD G  R + R  DR+  + R+ DRE+ +R  D+
Sbjct: 92  RDRGRDRDRDRDRDRDRDRERERDRERDRRERDR 125


>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42
           OS=Arabidopsis thaliana GN=RH42 PE=2 SV=2
          Length = 1166

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 151 RLDDREETKSRQDDREKTKRRLDKVKKLXXXXXRADNAD 35
           R DD E  K ++ +RE+ +R  D+VK+       +D+ D
Sbjct: 65  RDDDEEREKRKEKERERRRRDKDRVKRRSERRKSSDSED 103


>sp|Q9R9N1|LPSE_RHIME Lipopolysaccharide core biosynthesis
           glycosyltransferase lpsE OS=Rhizobium meliloti GN=lpsE
           PE=3 SV=1
          Length = 340

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 473 TLLIAVGNGWRTEVEERQNTIQSYCKTIILDNVSLTVELRSDVR 342
           T +I  G GWR ++E      +S+ + + LD + L ++++   R
Sbjct: 33  TAIIRPGRGWRRDIEGAAKIRESHFRNLSLDRILLPLKVKHMAR 76
tr_hit_id A5BJ64
Definition tr|A5BJ64|A5BJ64_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 59
Score (bit) 55.5
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915098|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_E02.
         (480 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BJ64|A5BJ64_VITVI Putative uncharacterized protein OS=Vitis...    55   1e-06
tr|Q6RUQ4|Q6RUQ4_DAUCA S-adenosylmethionine decarboxylase uORF O...    53   7e-06
tr|Q84LA3|Q84LA3_NARPS S-adenosylmethionine decarboxylase leader...    52   1e-05
tr|Q6RUQ6|Q6RUQ6_DAUCA S-adenosylmethionine decarboxylase uORF O...    52   1e-05
tr|Q39569|Q39569_CATRO Catharanthus roseus S-adenosyl-L-methioni...    52   1e-05
tr|Q43625|Q43625_PEA Putative ORF; conserved in 5' leaders of pl...    52   2e-05
tr|Q3ZM65|Q3ZM65_PHAVU Putative SAMDC uORF OS=Phaseolus vulgaris...    52   2e-05
tr|A7Y7H5|A7Y7H5_PRUDU Putative S-adenosylmethionine decarboxyla...    52   2e-05
tr|Q8LLV4|Q8LLV4_IPOBA UORF OS=Ipomoea batatas GN=SAMDC PE=4 SV=1      51   3e-05
tr|Q6KC47|Q6KC47_PRUPE S-adenosylmethionine decarboxylase (Fragm...    51   3e-05
tr|A7PAI3|A7PAI3_VITVI Chromosome chr14 scaffold_9, whole genome...    51   3e-05
tr|Q96526|Q96526_ARATH S-adenosylmethionine decarboxylase OS=Ara...    50   7e-05
tr|O24519|O24519_DIACA Putative uncharacterized protein gcsdc9 O...    49   1e-04
tr|Q1KUN3|Q1KUN3_9ROSI Putative uncharacterized protein OS=Cleom...    48   3e-04
tr|Q9SCW2|Q9SCW2_ARATH Putative uncharacterized protein OS=Arabi...    47   6e-04
tr|Q9LSU5|Q9LSU5_ARATH Genomic DNA, chromosome 3, P1 clone: MWL2...    45   0.001
tr|A6YGP9|A6YGP9_SACOF S-adenosylmethionine decarboxylase uORF O...    43   0.009
tr|B8BFA5|B8BFA5_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.011
tr|A3A8Z3|A3A8Z3_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|A2X741|A2X741_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|A9TD00|A9TD00_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|Q9AD63|Q9AD63_STRCO Putative oxidoreductase OS=Streptomyces c...    33   5.4  
tr|Q5Z617|Q5Z617_ORYSJ Putative uncharacterized protein P0610D01...    33   7.0  
tr|B6K972|B6K972_TOXGO Putative uncharacterized protein OS=Toxop...    33   9.2  

>tr|A5BJ64|A5BJ64_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017166 PE=4 SV=1
          Length = 548

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 28/59 (47%), Positives = 36/59 (61%)
 Frame = +2

Query: 167 SPTIANVLMEXXXXXXXXXXXXXFRYLLDLLYGIEDVRPNGGIVKFQNAVYSNCLRKPS 343
           +P   +V+ME              +Y + L Y IEDVRPNGGI KF++A YSNC+RKPS
Sbjct: 490 APQSVDVVMETKGGKKKSSSSSSLQYEVPLGYIIEDVRPNGGIEKFRSAAYSNCVRKPS 548


>tr|Q6RUQ4|Q6RUQ4_DAUCA S-adenosylmethionine decarboxylase uORF
           OS=Daucus carota PE=4 SV=1
          Length = 53

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +2

Query: 236 FRYLLDLLYGIEDVRPNGGIVKFQNAVYSNCLRKPS 343
           F Y   L Y IEDVRPNGGI KF++A YSNC RKPS
Sbjct: 18  FFYEAPLGYSIEDVRPNGGIKKFRSAAYSNCARKPS 53


>tr|Q84LA3|Q84LA3_NARPS S-adenosylmethionine decarboxylase leader
           OS=Narcissus pseudonarcissus GN=SAMdc PE=4 SV=1
          Length = 51

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 24/35 (68%), Positives = 27/35 (77%)
 Frame = +2

Query: 239 RYLLDLLYGIEDVRPNGGIVKFQNAVYSNCLRKPS 343
           +Y   L Y IEDVRPNGGI KF++A YSNC RKPS
Sbjct: 17  QYEAPLGYSIEDVRPNGGIKKFRSAAYSNCARKPS 51


>tr|Q6RUQ6|Q6RUQ6_DAUCA S-adenosylmethionine decarboxylase uORF
           OS=Daucus carota PE=4 SV=1
          Length = 53

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 24/34 (70%), Positives = 26/34 (76%)
 Frame = +2

Query: 242 YLLDLLYGIEDVRPNGGIVKFQNAVYSNCLRKPS 343
           Y   L Y IEDVRPNGGI KF++A YSNC RKPS
Sbjct: 20  YEAPLGYSIEDVRPNGGIKKFRSAAYSNCARKPS 53


>tr|Q39569|Q39569_CATRO Catharanthus roseus S-adenosyl-L-methionine
           decarboxylase proenzyme OS=Catharanthus roseus PE=4 SV=1
          Length = 51

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 24/34 (70%), Positives = 26/34 (76%)
 Frame = +2

Query: 242 YLLDLLYGIEDVRPNGGIVKFQNAVYSNCLRKPS 343
           Y   L Y IEDVRPNGGI KF++A YSNC RKPS
Sbjct: 18  YEAPLGYSIEDVRPNGGIKKFRSAAYSNCARKPS 51


>tr|Q43625|Q43625_PEA Putative ORF; conserved in 5' leaders of plant
           SAMdC OS=Pisum sativum PE=4 SV=1
          Length = 54

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 23/34 (67%), Positives = 26/34 (76%)
 Frame = +2

Query: 242 YLLDLLYGIEDVRPNGGIVKFQNAVYSNCLRKPS 343
           Y   L Y IED+RPNGGI KF++A YSNC RKPS
Sbjct: 21  YEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 54


>tr|Q3ZM65|Q3ZM65_PHAVU Putative SAMDC uORF OS=Phaseolus vulgaris
           PE=4 SV=1
          Length = 53

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 23/34 (67%), Positives = 26/34 (76%)
 Frame = +2

Query: 242 YLLDLLYGIEDVRPNGGIVKFQNAVYSNCLRKPS 343
           Y   L Y IED+RPNGGI KF++A YSNC RKPS
Sbjct: 20  YEAPLGYSIEDIRPNGGIKKFRSAAYSNCARKPS 53


>tr|A7Y7H5|A7Y7H5_PRUDU Putative S-adenosylmethionine decarboxylase
           (Fragment) OS=Prunus dulcis PE=2 SV=1
          Length = 56

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 27/54 (50%), Positives = 31/54 (57%)
 Frame = +2

Query: 182 NVLMEXXXXXXXXXXXXXFRYLLDLLYGIEDVRPNGGIVKFQNAVYSNCLRKPS 343
           N LME               Y   L Y IEDVRP+GGI KF++A YSNC+RKPS
Sbjct: 3   NELMESKGGKKKSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 56


>tr|Q8LLV4|Q8LLV4_IPOBA UORF OS=Ipomoea batatas GN=SAMDC PE=4 SV=1
          Length = 51

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 23/34 (67%), Positives = 26/34 (76%)
 Frame = +2

Query: 242 YLLDLLYGIEDVRPNGGIVKFQNAVYSNCLRKPS 343
           Y   L Y +EDVRPNGGI KF++A YSNC RKPS
Sbjct: 18  YEAPLGYTVEDVRPNGGIKKFRSAAYSNCARKPS 51


>tr|Q6KC47|Q6KC47_PRUPE S-adenosylmethionine decarboxylase
           (Fragment) OS=Prunus persica GN=samdc PE=4 SV=1
          Length = 309

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 23/34 (67%), Positives = 27/34 (79%)
 Frame = +2

Query: 242 YLLDLLYGIEDVRPNGGIVKFQNAVYSNCLRKPS 343
           Y   L Y IEDVRP+GGI KF++A YSNC+RKPS
Sbjct: 18  YEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 51