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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915104
Clone id YMU001_000066_E08
Library
Length 429
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTACAAACTGAGCTACTGCCAGATATTTTTTGATTAACTCAATTCG
GCCATGAAATACATGAAAGTTATTGTCCTGAACAATATTTACAAGACCATCCGTCCCCTT
CCAGGAAAACTATTAGCTACAAATTGGTAGTGTCATACATTGGTTTGAAAAGTTTGAGTT
TTTACCAACTCACCCATAACTTGGGTATGTAAAACCGTGTTGGCCTCCCACTCTTTCCCA
CTTTAAATCCTCACTGTATTGGGAAAACGCTTTCTTAATATCACCACCTGCCATTGCCAA
GTAGTAATGTATTGTTGCATCATCCAACTGCAAACTCCTCTTCAAAGAGTCAATGACTCC
TTTTCTAAACCTTTCTGCAACGATTGCCTCGGTCCCTACTGGCTTAGGCGGTTTGTCATC
CCCCAAATA
■■Homology search results ■■ -
sp_hit_id Q9FZ32
Definition sp|Q9FZ32|FB60_ARATH F-box protein At1g55000 OS=Arabidopsis thaliana
Align length 48
Score (bit) 57.8
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915104|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_E08.
         (413 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FZ32|FB60_ARATH F-box protein At1g55000 OS=Arabidopsis thal...    58   2e-08
sp|Q495N2|S36A3_HUMAN Proton-coupled amino acid transporter 3 OS...    31   1.7  
sp|Q15139|KPCD1_HUMAN Serine/threonine-protein kinase D1 OS=Homo...    30   4.9  
sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydro...    29   8.4  

>sp|Q9FZ32|FB60_ARATH F-box protein At1g55000 OS=Arabidopsis
           thaliana GN=At1g55000 PE=2 SV=1
          Length = 221

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 25/48 (52%), Positives = 37/48 (77%)
 Frame = -1

Query: 350 RKGVIDSLKRSLQLDDATIHYYLAMAGGDIKKAFSQYSEDLKWERVGG 207
           ++ +I+SL+RS+Q+DD T  YYLA+A GD + A S++S DL+WER  G
Sbjct: 172 KRRLIESLRRSMQVDDGTALYYLAIAEGDPRSALSEFSADLRWERQAG 219


>sp|Q495N2|S36A3_HUMAN Proton-coupled amino acid transporter 3
           OS=Homo sapiens GN=SLC36A3 PE=1 SV=2
          Length = 470

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 68  CPEQYLQDHPSPSRKTISYKLVVSYIGLKSLSFYQLTHNL 187
           CP  +L+ H    R T+S+ LV++ +G  S+ F  +  NL
Sbjct: 122 CPNTWLRAHAVWGRYTVSFLLVITQLGFCSVYFMFMADNL 161


>sp|Q15139|KPCD1_HUMAN Serine/threonine-protein kinase D1 OS=Homo
           sapiens GN=PRKD1 PE=1 SV=2
          Length = 912

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 239 SEDLKWERVGGQHGFTYPSY 180
           S+DL+WE+  G+ G  YP++
Sbjct: 864 SDDLRWEKYAGEQGLQYPTH 883


>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase
            54 OS=Homo sapiens GN=USP54 PE=1 SV=4
          Length = 1684

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +2

Query: 47   HEIHESYCPEQYLQDHPSPSRKTISYKLVVSYIGLKSLSFYQLTHNLGM*NRVGLPLFP 223
            HE H S  PE     H SPSR  +     V    ++  +F+          R GLP  P
Sbjct: 930  HESHSSLSPESSAPQHSSPSRSALKLLTSVEVDNIEPSAFH----------RQGLPKAP 978
tr_hit_id A7PS82
Definition tr|A7PS82|A7PS82_VITVI Chromosome chr14 scaffold_27, whole genome shotgun sequence OS=Vitis vinifera
Align length 54
Score (bit) 64.7
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915104|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_E08.
         (413 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PS82|A7PS82_VITVI Chromosome chr14 scaffold_27, whole genom...    65   2e-09
tr|A9RLI2|A9RLI2_PHYPA Predicted protein OS=Physcomitrella paten...    64   3e-09
tr|Q851T1|Q851T1_ORYSJ Os03g0699600 protein OS=Oryza sativa subs...    58   2e-07
tr|Q53RA5|Q53RA5_ORYSJ Putative uncharacterized protein (Fragmen...    58   2e-07
tr|A3ALR9|A3ALR9_ORYSJ Putative uncharacterized protein OS=Oryza...    58   2e-07
tr|B6TTS5|B6TTS5_MAIZE LysM domain containing protein OS=Zea may...    57   4e-07
tr|A8ISH4|A8ISH4_CHLRE Predicted protein OS=Chlamydomonas reinha...    41   0.026
tr|Q8VWW0|Q8VWW0_GOSHI Polyphosphoinositide binding protein OS=G...    35   2.4  
tr|Q2R3L0|Q2R3L0_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    35   2.4  
tr|B8BKQ8|B8BKQ8_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|Q1ZCB5|Q1ZCB5_9GAMM Putative carboxynorspermidine decarboxyla...    34   4.2  
tr|A8Q8H1|A8Q8H1_BRUMA Hsp20/alpha crystallin family protein OS=...    33   9.3  

>tr|A7PS82|A7PS82_VITVI Chromosome chr14 scaffold_27, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022802001
           PE=4 SV=1
          Length = 223

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 28/54 (51%), Positives = 42/54 (77%)
 Frame = -1

Query: 368 IVAERFRKGVIDSLKRSLQLDDATIHYYLAMAGGDIKKAFSQYSEDLKWERVGG 207
           + +E+ R+ VI+SLKRS+Q+DD T  YYL+++ GD + A S++SEDL+WER  G
Sbjct: 168 VSSEQGRRRVIESLKRSMQIDDGTAQYYLSISNGDPRAAISEFSEDLRWERHAG 221


>tr|A9RLI2|A9RLI2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_116069 PE=4 SV=1
          Length = 261

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
 Frame = -1

Query: 413 YLGDDKPPKP--VGTEAIVAERFRKGVIDSLKRSLQLDDATIHYYLAMAGGDIKKAFSQY 240
           YL   KP +      EA    R +  V++SLKRS+++DD+T  YYLA+A GD++ A  ++
Sbjct: 191 YLDGSKPNRKDAARAEARAQRRLKTEVMESLKRSMRVDDSTAQYYLALAEGDVRGALQEF 250

Query: 239 SEDLKWER 216
           SEDL+WER
Sbjct: 251 SEDLQWER 258


>tr|Q851T1|Q851T1_ORYSJ Os03g0699600 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0017F17.11 PE=2 SV=1
          Length = 222

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 26/54 (48%), Positives = 36/54 (66%)
 Frame = -1

Query: 377 TEAIVAERFRKGVIDSLKRSLQLDDATIHYYLAMAGGDIKKAFSQYSEDLKWER 216
           T    AER  + +++S+KRSL  DD T  YYL++  GD + A  +YSEDL+WER
Sbjct: 164 TNTAAAERRSRRILESVKRSLHTDDRTAAYYLSVTDGDPRAAMMEYSEDLRWER 217


>tr|Q53RA5|Q53RA5_ORYSJ Putative uncharacterized protein (Fragment)
           OS=Oryza sativa subsp. japonica PE=4 SV=1
          Length = 124

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 26/54 (48%), Positives = 36/54 (66%)
 Frame = -1

Query: 377 TEAIVAERFRKGVIDSLKRSLQLDDATIHYYLAMAGGDIKKAFSQYSEDLKWER 216
           T    AER  + +++S+KRSL  DD T  YYL++  GD + A  +YSEDL+WER
Sbjct: 66  TNTAAAERRSRRILESVKRSLHTDDRTAAYYLSVTDGDPRAAMMEYSEDLRWER 119


>tr|A3ALR9|A3ALR9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011741 PE=4 SV=1
          Length = 149

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 26/54 (48%), Positives = 36/54 (66%)
 Frame = -1

Query: 377 TEAIVAERFRKGVIDSLKRSLQLDDATIHYYLAMAGGDIKKAFSQYSEDLKWER 216
           T    AER  + +++S+KRSL  DD T  YYL++  GD + A  +YSEDL+WER
Sbjct: 91  TNTAAAERRSRRILESVKRSLHTDDRTAAYYLSVTDGDPRAAMMEYSEDLRWER 144


>tr|B6TTS5|B6TTS5_MAIZE LysM domain containing protein OS=Zea mays
           PE=2 SV=1
          Length = 251

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 24/51 (47%), Positives = 38/51 (74%)
 Frame = -1

Query: 368 IVAERFRKGVIDSLKRSLQLDDATIHYYLAMAGGDIKKAFSQYSEDLKWER 216
           + AER  K +++S++RSL +DD T  YYL++  GD + A ++YSEDL+WE+
Sbjct: 196 VSAERRNKRILESVRRSLHVDDGTAAYYLSVTEGDPRAAMTEYSEDLRWEQ 246


>tr|A8ISH4|A8ISH4_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=LMR3 PE=4 SV=1
          Length = 254

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 21/48 (43%), Positives = 28/48 (58%)
 Frame = -1

Query: 362 AERFRKGVIDSLKRSLQLDDATIHYYLAMAGGDIKKAFSQYSEDLKWE 219
           A + R  ++  L RSL +D+ T  YYLA AG   KKA +   +DL WE
Sbjct: 188 ASKLRDKLVALLGRSLHVDEHTARYYLAEAGWCPKKAVAMCEQDLAWE 235


>tr|Q8VWW0|Q8VWW0_GOSHI Polyphosphoinositide binding protein
           OS=Gossypium hirsutum GN=Ssh2 PE=2 SV=1
          Length = 247

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -1

Query: 320 SLQLDDATIHYYLAMAGGDIKKAFSQYSEDLKWERVGGQHGFTYPS 183
           S ++DD TI  +L     D++KA S + + LKW R    +GF  PS
Sbjct: 37  SKEVDDMTIRRFLRARELDVEKASSMFLKYLKWRRSFVPNGFISPS 82


>tr|Q2R3L0|Q2R3L0_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=Os11g0514800 PE=2 SV=1
          Length = 424

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -1

Query: 383 VGTEAIVAERFRKGVIDSLKRSLQLDDATIHYYLAMAGGDIKKAFSQYSEDLKWERVGGQ 204
           VG E  V+E  +K V+DSL R+    D  +H  L      +KK+F  Y ++   E +  Q
Sbjct: 156 VGGERKVSEDAKKDVVDSLLRASGCLDYCVHRILVQMPAQVKKSFPSYFQEGMLEAISIQ 215


>tr|B8BKQ8|B8BKQ8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36259 PE=4 SV=1
          Length = 424

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -1

Query: 383 VGTEAIVAERFRKGVIDSLKRSLQLDDATIHYYLAMAGGDIKKAFSQYSEDLKWERVGGQ 204
           VG E  V+E  +K V+DSL R+    D  +H  L      +KK+F  Y ++   E +  Q
Sbjct: 156 VGGERKVSEDAKKDVVDSLLRASGCLDYCVHRILVQIPAQVKKSFPSYFQEGMLEAISIQ 215