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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915105
Clone id YMU001_000066_E09
Library
Length 486
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGCTCTGAAATATCACTGCCCATCAGTCGTGATATTAAATTTGACTACATTCACATCAGC
TGAACATGGGCTACTAAAGAATGCAATTGCTCTGGTCATATTCTGAGTGAGCTTTCTATA
CATGATTGTGTATCTTTCACCAATGCCCCCTTTTATAAGGTCATAAACATTGAGTCAAGT
GAAGTAGATGCTAGGCGGATTTGTGAGTACATGAAGAATGTATCATTCCTTGTTTATTTT
GTACACGGGCCTCACGGCTTCAGTTGATGCATGCCAAGTTTCATCAGCCCCGCAGCTGAT
GCTGCATCCAGTTCCTCCTTTGAAAGAGAATCCAGTGCTTGCTCCTGTAACCGGTGCATT
AGGTATAAGAGGAATGCATGCACAAACAACAGATAAAACAGCACACCAAGCCGTGCCAGA
GGGCGTCGCCAAAGGAATCTACCAGCTGTAACAGCTCCAGTATCCAAAAACTTTGCTGCT
TTCTGT
■■Homology search results ■■ -
sp_hit_id Q5JLY8
Definition sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica
Align length 50
Score (bit) 78.2
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915105|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_E09.
         (486 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica ...    78   2e-14
sp|Q8S8N9|GOGC1_ARATH Golgin candidate 1 OS=Arabidopsis thaliana...    76   7e-14
sp|Q3ZU82|GOGA5_RAT Golgin subfamily A member 5 OS=Rattus norveg...    33   0.52 
sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculu...    33   0.52 
sp|Q8TBA6|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapien...    33   0.52 
sp|Q7SXE4|GOGA5_DANRE Golgin subfamily A member 5 OS=Danio rerio...    33   0.52 
sp|Q6GNT7|GOGA5_XENLA Golgin subfamily A member 5 OS=Xenopus lae...    33   0.88 
sp|Q5NPE5|PYRB_ZYMMO Aspartate carbamoyltransferase OS=Zymomonas...    31   3.4  
sp|Q9P6J5|YHD5_SCHPO Uncharacterized permease C1683.05 OS=Schizo...    30   5.8  
sp|O80977|VSR3_ARATH Vacuolar-sorting receptor 3 OS=Arabidopsis ...    29   9.9  
sp|Q2UH11|MOCOS_ASPOR Molybdenum cofactor sulfurase OS=Aspergill...    29   9.9  

>sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica
           GN=Os01g0744400 PE=2 SV=1
          Length = 709

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 36/50 (72%), Positives = 43/50 (86%)
 Frame = -2

Query: 485 QKAAKFLDTGAVTAGRFLWRRPLARLGVLFYLLFVHAFLLYLMHRLQEQA 336
           QKAAK LD+GAV A RFLWR P+AR+ +LFYL+FVH FL+YLMHRLQ+ A
Sbjct: 643 QKAAKLLDSGAVRATRFLWRHPVARVSLLFYLVFVHLFLMYLMHRLQDFA 692


>sp|Q8S8N9|GOGC1_ARATH Golgin candidate 1 OS=Arabidopsis thaliana
           GN=GC1 PE=2 SV=2
          Length = 707

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 35/50 (70%), Positives = 42/50 (84%)
 Frame = -2

Query: 485 QKAAKFLDTGAVTAGRFLWRRPLARLGVLFYLLFVHAFLLYLMHRLQEQA 336
           Q A K LD+GAV A RFLWR P+AR+ +LFYL+FVH FL+YL+HRLQEQA
Sbjct: 643 QNAVKLLDSGAVRATRFLWRYPIARMFLLFYLVFVHLFLMYLIHRLQEQA 692


>sp|Q3ZU82|GOGA5_RAT Golgin subfamily A member 5 OS=Rattus
           norvegicus GN=Golga5 PE=1 SV=1
          Length = 728

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = -2

Query: 485 QKAAKFLDTGAVTAGRFLWRRPLARLGVLFYLLFVHAFLLYLM 357
           +KAA  +D  ++  G FL R P+AR+ V+ Y+  +H +++ ++
Sbjct: 671 RKAASSIDQFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVL 713


>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus
           GN=Golga5 PE=1 SV=2
          Length = 729

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = -2

Query: 485 QKAAKFLDTGAVTAGRFLWRRPLARLGVLFYLLFVHAFLLYLM 357
           +KAA  +D  ++  G FL R P+AR+ V+ Y+  +H +++ ++
Sbjct: 672 RKAASSIDQFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVL 714


>sp|Q8TBA6|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapiens
           GN=GOLGA5 PE=1 SV=2
          Length = 731

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = -2

Query: 485 QKAAKFLDTGAVTAGRFLWRRPLARLGVLFYLLFVHAFLLYLM 357
           +KAA  +D  ++  G FL R P+AR+ V+ Y+  +H +++ ++
Sbjct: 674 RKAASSIDQFSIRLGIFLRRYPIARVFVIIYMALLHLWVMIVL 716


>sp|Q7SXE4|GOGA5_DANRE Golgin subfamily A member 5 OS=Danio rerio
           GN=golga5 PE=2 SV=1
          Length = 760

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = -2

Query: 485 QKAAKFLDTGAVTAGRFLWRRPLARLGVLFYLLFVHAFLLYLM 357
           +KAA  +D  ++  G FL R P+AR+ V+ Y+  +H +++ ++
Sbjct: 703 RKAASTIDRFSIRLGIFLRRYPMARVFVIIYMALLHLWVMIVL 745


>sp|Q6GNT7|GOGA5_XENLA Golgin subfamily A member 5 OS=Xenopus laevis
           GN=golga5 PE=2 SV=1
          Length = 722

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = -2

Query: 485 QKAAKFLDTGAVTAGRFLWRRPLARLGVLFYLLFVHAFLLYLM 357
           +KAA  +D  ++  G FL R P+AR+ ++ Y+  +H +++ ++
Sbjct: 665 RKAATSIDQFSIRLGIFLRRYPIARVFIIIYMALLHLWVMIVL 707


>sp|Q5NPE5|PYRB_ZYMMO Aspartate carbamoyltransferase OS=Zymomonas
           mobilis GN=pyrB PE=3 SV=1
          Length = 319

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = +2

Query: 176 QVK*MLGGFVST*RMYHSLFILYTGLTASVDACQVSSAPQLMLHPVP 316
           Q + M GGF+ + R YH+LF    GLT  V+  ++++   L++HP P
Sbjct: 230 QTERMAGGFIPSLREYHALF----GLT--VEKLKLAADDVLVMHPGP 270


>sp|Q9P6J5|YHD5_SCHPO Uncharacterized permease C1683.05
           OS=Schizosaccharomyces pombe GN=SPBC1683.05 PE=2 SV=1
          Length = 559

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 417 GTAWCAVLSVVCACIPLIP 361
           G  W A+++ +CAC+PLIP
Sbjct: 461 GLNWRALIAFLCACVPLIP 479


>sp|O80977|VSR3_ARATH Vacuolar-sorting receptor 3 OS=Arabidopsis
           thaliana GN=VSR3 PE=2 SV=1
          Length = 628

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 64  TWATKECNCSGHILSELSIHDCVSFTNA 147
           TW + EC+CSG +L       C+S T A
Sbjct: 537 TWGSYECSCSGDLLYIRDHDTCISKTGA 564
tr_hit_id A7PEI1
Definition tr|A7PEI1|A7PEI1_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera
Align length 57
Score (bit) 79.7
E-value 7.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915105|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_E09.
         (486 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PEI1|A7PEI1_VITVI Chromosome chr11 scaffold_13, whole genom...    80   7e-14
tr|Q0JJD9|Q0JJD9_ORYSJ Os01g0744400 protein OS=Oryza sativa subs...    78   2e-13
tr|B8A9E3|B8A9E3_ORYSI Putative uncharacterized protein OS=Oryza...    78   2e-13
tr|A2ZXQ9|A2ZXQ9_ORYSJ Putative uncharacterized protein OS=Oryza...    78   2e-13
tr|A5ANX1|A5ANX1_VITVI Putative uncharacterized protein OS=Vitis...    49   9e-05
tr|A8J696|A8J696_CHLRE Putative uncharacterized protein OS=Chlam...    42   0.020
tr|Q1WRZ8|Q1WRZ8_LACS1 O-acetyl transferase OS=Lactobacillus sal...    35   1.4  
tr|A7QBV7|A7QBV7_VITVI Chromosome chr1 scaffold_75, whole genome...    35   1.4  
tr|A3WF33|A3WF33_9SPHN Putative uncharacterized protein OS=Eryth...    35   2.4  
tr|Q0C2Q4|Q0C2Q4_HYPNA Lysozyme OS=Hyphomonas neptunium (strain ...    34   3.1  
tr|Q8GXQ6|Q8GXQ6_ARATH Putative uncharacterized protein At1g2446...    34   3.1  
tr|Q4E1R3|Q4E1R3_TRYCR Putative uncharacterized protein OS=Trypa...    34   3.1  
tr|Q4DA62|Q4DA62_TRYCR Putative uncharacterized protein OS=Trypa...    34   3.1  
tr|Q2KZJ7|Q2KZJ7_BORA1 Putative uncharacterized protein OS=Borde...    34   4.1  
tr|Q4C772|Q4C772_CROWT Cell cycle protein OS=Crocosphaera watson...    34   4.2  
tr|B8A4N9|B8A4N9_DANRE Golgi autoantigen, golgin subfamily a, 5 ...    33   5.3  
tr|Q82GX0|Q82GX0_STRAW Putative integral membrane protein OS=Str...    33   5.3  
tr|A5D7A5|A5D7A5_BOVIN GOLGA5 protein OS=Bos taurus GN=GOLGA5 PE...    33   5.3  
tr|Q2TS49|Q2TS49_HUMAN Cell proliferation-inducing gene 31 OS=Ho...    33   5.3  
tr|B4E1D4|B4E1D4_HUMAN cDNA FLJ54399, highly similar to Golgin s...    33   5.3  
tr|A8KAL2|A8KAL2_HUMAN cDNA FLJ76981, highly similar to Homo sap...    33   5.3  
tr|Q0CMU9|Q0CMU9_ASPTN Predicted protein OS=Aspergillus terreus ...    33   5.3  
tr|Q22UV5|Q22UV5_TETTH Hypothetical repeat containing protein OS...    33   7.0  
tr|Q22UV3|Q22UV3_TETTH Putative uncharacterized protein OS=Tetra...    33   7.0  
tr|B0WAT8|B0WAT8_CULQU TFIIH basal transcription factor complex ...    33   7.0  
tr|B7ZTX8|B7ZTX8_XENTR Putative uncharacterized protein LOC54898...    33   9.1  
tr|B3DL98|B3DL98_XENTR Putative uncharacterized protein LOC54898...    33   9.1  
tr|Q12DL5|Q12DL5_POLSJ Putative uncharacterized protein OS=Polar...    33   9.1  
tr|A7AD87|A7AD87_9PORP Putative uncharacterized protein OS=Parab...    33   9.3  
tr|Q4Z781|Q4Z781_PLABE Putative uncharacterized protein OS=Plasm...    33   9.3  

>tr|A7PEI1|A7PEI1_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016674001
           PE=4 SV=1
          Length = 677

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 39/57 (68%), Positives = 46/57 (80%)
 Frame = -2

Query: 485 QKAAKFLDTGAVTAGRFLWRRPLARLGVLFYLLFVHAFLLYLMHRLQEQALDSLSKE 315
           QKAAK LD+GAV A RFLWR P ARL +LFYL+FVH FL+YL+H LQEQA +  S+E
Sbjct: 608 QKAAKLLDSGAVRATRFLWRYPTARLLLLFYLVFVHLFLMYLLHHLQEQADELASRE 664


>tr|Q0JJD9|Q0JJD9_ORYSJ Os01g0744400 protein OS=Oryza sativa subsp.
           japonica GN=Os01g0744400 PE=4 SV=1
          Length = 709

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 36/50 (72%), Positives = 43/50 (86%)
 Frame = -2

Query: 485 QKAAKFLDTGAVTAGRFLWRRPLARLGVLFYLLFVHAFLLYLMHRLQEQA 336
           QKAAK LD+GAV A RFLWR P+AR+ +LFYL+FVH FL+YLMHRLQ+ A
Sbjct: 643 QKAAKLLDSGAVRATRFLWRHPVARVSLLFYLVFVHLFLMYLMHRLQDFA 692


>tr|B8A9E3|B8A9E3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_03707 PE=4 SV=1
          Length = 648

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 36/50 (72%), Positives = 43/50 (86%)
 Frame = -2

Query: 485 QKAAKFLDTGAVTAGRFLWRRPLARLGVLFYLLFVHAFLLYLMHRLQEQA 336
           QKAAK LD+GAV A RFLWR P+AR+ +LFYL+FVH FL+YLMHRLQ+ A
Sbjct: 582 QKAAKLLDSGAVRATRFLWRHPVARVSLLFYLVFVHLFLMYLMHRLQDFA 631


>tr|A2ZXQ9|A2ZXQ9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_003331 PE=4 SV=1
          Length = 132

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 36/50 (72%), Positives = 43/50 (86%)
 Frame = -2

Query: 485 QKAAKFLDTGAVTAGRFLWRRPLARLGVLFYLLFVHAFLLYLMHRLQEQA 336
           QKAAK LD+GAV A RFLWR P+AR+ +LFYL+FVH FL+YLMHRLQ+ A
Sbjct: 66  QKAAKLLDSGAVRATRFLWRHPVARVSLLFYLVFVHLFLMYLMHRLQDFA 115


>tr|A5ANX1|A5ANX1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_042316 PE=4 SV=1
          Length = 1202

 Score = 49.3 bits (116), Expect = 9e-05
 Identities = 24/33 (72%), Positives = 27/33 (81%)
 Frame = -2

Query: 485 QKAAKFLDTGAVTAGRFLWRRPLARLGVLFYLL 387
           QKAAK LD+GAV A RFLWR P ARL +LFYL+
Sbjct: 368 QKAAKLLDSGAVRATRFLWRYPTARLLLLFYLV 400


>tr|A8J696|A8J696_CHLRE Putative uncharacterized protein
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_205573 PE=4
           SV=1
          Length = 774

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = -2

Query: 479 AAKFLDTGAVTAGRFLWRRPLARLGVLFYLLFVHAFLLYLMHRLQEQA 336
           AA FLD+ A T    L + PLARLGV  Y++ +H ++  L+ R+Q  A
Sbjct: 713 AANFLDSTASTTSYVLRQYPLARLGVFAYVVLIHLYVYLLIARMQRIA 760


>tr|Q1WRZ8|Q1WRZ8_LACS1 O-acetyl transferase OS=Lactobacillus
           salivarius subsp. salivarius (strain UCC118) GN=LSL_1527
           PE=4 SV=1
          Length = 352

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +2

Query: 5   LKYHCPSVVILNLTTFTS---AEHGLLKNAIALVIF*VSFLYMIVYLSPMPPFIRS 163
           L +H   +  LN+T+        HG+L   IALVI+ + F Y+ + + P  P IRS
Sbjct: 285 LCFHIIDISTLNITSLIQHVFLPHGMLIFTIALVIYRIIFTYIAIIIIPYIPIIRS 340


>tr|A7QBV7|A7QBV7_VITVI Chromosome chr1 scaffold_75, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035124001
           PE=4 SV=1
          Length = 585

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -2

Query: 452 VTAGRFLWRRPLARLGVLFYLLFVHAFLL 366
           V+ GR L  RP ARLG++ Y LF+H +LL
Sbjct: 553 VSGGRILMSRPRARLGLIAYWLFLHIWLL 581


>tr|A3WF33|A3WF33_9SPHN Putative uncharacterized protein
           OS=Erythrobacter sp. NAP1 GN=NAP1_11843 PE=4 SV=1
          Length = 399

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = -2

Query: 446 AGRFLWRRPLARLGVLFYLLFVHAFLLYLMHRLQEQALDSLS 321
           +G  +WR  LAR+ VLF + FVHA LL     L+  AL  L+
Sbjct: 89  SGENVWRSHLARMAVLFIIGFVHALLLASNDVLRTYALAGLA 130


>tr|Q0C2Q4|Q0C2Q4_HYPNA Lysozyme OS=Hyphomonas neptunium (strain
           ATCC 15444) GN=HNE_1271 PE=3 SV=1
          Length = 421

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +2

Query: 227 SLFILYTGLTASVDACQVSSAPQLMLHPVPPLKENPVLAPVTG---ALGIRGMHAQTTDK 397
           SLF+ +    A+V    +   P+    P PP  E  V+    G    L  RG  A TT K
Sbjct: 146 SLFLTHPSGPAAVPGALIRPIPEDGGQPFPPASERTVIIEARGEGEPLLPRGRTADTTPK 205

Query: 398 TAHQAVPEGVAK 433
            A +AV E +A+
Sbjct: 206 AAARAVSERIAR 217