NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915113
Clone id YMU001_000066_F06
Library
Length 287
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCAAAGCCTTACAGGTTATAAGACATGAAGATGTGTCACTATGGCAAGGTTTGTTGTCGA
AACTTGTGGAGCTGTCAGCAGTGAGCCCCGCATATGCAGAGCTGGTTCTTATGGTGTTGA
GGTGGCTCCCTGAAGACATAACGGTTTATAATGAGGATTTGGAAGGTTTATCCTTAAATT
GGTTCCCACATGTATCGTCCAGTTTGACATGGCGAAAGTCGACCTTTTAATTTTTCGCTG
GTGCAGGGGACAGGCGTCGACAATTGGTTCACTGCCTTACACAAGCT
■■Homology search results ■■ -
sp_hit_id Q54PQ8
Definition sp|Q54PQ8|XPO5_DICDI Exportin-5 OS=Dictyostelium discoideum
Align length 44
Score (bit) 35.4
E-value 0.088
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915113|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_F06.
         (287 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54PQ8|XPO5_DICDI Exportin-5 OS=Dictyostelium discoideum GN=x...    35   0.088
sp|Q2V3N5|FB211_ARATH F-box protein At3g59000 OS=Arabidopsis tha...    33   0.44 
sp|O70458|OSMR_MOUSE Oncostatin-M specific receptor subunit beta...    33   0.57 
sp|A9KV86|FDHE_SHEB9 Protein fdhE homolog OS=Shewanella baltica ...    30   3.7  
sp|Q54U87|DHKA_DICDI Hybrid signal transduction histidine kinase...    30   3.7  
sp|Q54X25|INT5_DICDI Integrator complex subunit 5-like protein O...    30   4.8  
sp|Q9SSR7|FBL31_ARATH F-box/LRR-repeat protein At1g52650 OS=Arab...    29   6.3  
sp|A6WHI5|FDHE_SHEB8 Protein fdhE homolog OS=Shewanella baltica ...    29   8.3  

>sp|Q54PQ8|XPO5_DICDI Exportin-5 OS=Dictyostelium discoideum GN=xpo5
           PE=3 SV=1
          Length = 1135

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 9   LQVIRHEDVSLWQGLLSKLVELSAVSPAYAELVLMVLRWLPEDI 140
           + VI+ +    W  LL+ L+E+S +S    ELVL     LP DI
Sbjct: 116 VDVIKRDWPQRWMNLLTSLIEISKISDTQTELVLSTFGLLPHDI 159


>sp|Q2V3N5|FB211_ARATH F-box protein At3g59000 OS=Arabidopsis
           thaliana GN=At3g59000 PE=2 SV=2
          Length = 491

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 54  LSKLVELSAVSPAYAELVLMVLRWLPEDITVYNEDLEGLSLNWFPHVSS 200
           + K   L    PA  ELVL+ + WL  D+T+ N  L+ L+++   H+ +
Sbjct: 176 VDKFETLLLALPALEELVLVDVNWLDSDVTISNASLKTLTIDSDGHLGT 224


>sp|O70458|OSMR_MOUSE Oncostatin-M specific receptor subunit beta
           OS=Mus musculus GN=Osmr PE=1 SV=1
          Length = 971

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 129 PEDITVYNEDLEGLSLNWFPHVSSSLTWRKSTF 227
           P++++    D + L  +W P V ++LTWRK  F
Sbjct: 237 PKNVSCETRDFKTLDCSWEPGVDTTLTWRKQRF 269


>sp|A9KV86|FDHE_SHEB9 Protein fdhE homolog OS=Shewanella baltica
           (strain OS195) GN=fdhE PE=3 SV=1
          Length = 301

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 9   LQVIRHEDVSLWQGLLSKLVE--LSAVSPAYAELVLMVLRWLPEDITVYNEDLEGLSLNW 182
           L ++  E  S WQGLL +L+   L  V  + A +V ++++  PE ++ +   L    ++ 
Sbjct: 84  LSLLGSEADSYWQGLLQQLLSDLLPQVDESIARVVRLLMQQSPEQLSSWGRSLRQGHVSE 143

Query: 183 FPHVSSSLTW 212
            P   S   W
Sbjct: 144 VPAHFSLFIW 153


>sp|Q54U87|DHKA_DICDI Hybrid signal transduction histidine kinase A
           OS=Dictyostelium discoideum GN=dhkA PE=1 SV=1
          Length = 2150

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = -2

Query: 184 NQFKDKPSKSSL*TVMSS--GSHLNTIRTSSAYAGLTADSSTSFDNKPCHSDTSSCLITC 11
           N   D P+KS   +   +  GSH       S  A     S +   NKP  S T S + TC
Sbjct: 242 NNITDSPTKSKRHSTYETNIGSHQRRKSIQSLIANSAIHSFSKLKNKPLSSSTPSTVNTC 301

Query: 10  KAL 2
            A+
Sbjct: 302 GAV 304


>sp|Q54X25|INT5_DICDI Integrator complex subunit 5-like protein
            OS=Dictyostelium discoideum GN=DDB_G0279251 PE=3 SV=1
          Length = 1563

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = +3

Query: 3    KALQVIRHEDVSLWQGLLSKLVELSAVSPAYAELVLMVLRWLPEDITVYNEDLEGLSLNW 182
            K++    H+D+     LL+ L+EL  ++P  +          P ++++YNE L+ +S NW
Sbjct: 937  KSIDSFSHDDLIT---LLNNLLELVKITPPPSSSS-------PSNLSIYNETLKCISSNW 986


>sp|Q9SSR7|FBL31_ARATH F-box/LRR-repeat protein At1g52650
           OS=Arabidopsis thaliana GN=At1g52650 PE=2 SV=1
          Length = 465

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 87  PAYAELVLMVLRWLPEDITVYNEDLEGLSLNW 182
           PA  ELVL  + W   D+TV N  ++ L++ +
Sbjct: 182 PALEELVLFAVSWRDRDVTVSNASIKTLTIKF 213


>sp|A6WHI5|FDHE_SHEB8 Protein fdhE homolog OS=Shewanella baltica
           (strain OS185) GN=fdhE PE=3 SV=1
          Length = 301

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 9   LQVIRHEDVSLWQGLLSKLVE--LSAVSPAYAELVLMVLRWLPEDITVYNEDLEGLSLNW 182
           L ++  E  S WQGLL +L+   L  V  + A ++ ++++  PE ++ +   L    ++ 
Sbjct: 84  LSLLGSEADSYWQGLLQQLLSDLLPQVDESIARVMRLLMQQSPEQLSSWGRSLRQGHVSE 143

Query: 183 FPHVSSSLTW 212
            P   S   W
Sbjct: 144 VPAHFSLFIW 153
tr_hit_id A5ARV6
Definition tr|A5ARV6|A5ARV6_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 53
Score (bit) 72.4
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915113|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_F06.
         (287 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5ARV6|A5ARV6_VITVI Putative uncharacterized protein OS=Vitis...    72   1e-11
tr|A7Q5S1|A7Q5S1_VITVI Chromosome chr14 scaffold_54, whole genom...    72   2e-11
tr|Q5ZDB2|Q5ZDB2_ORYSJ cDNA clone:J013151I23, full insert sequen...    70   7e-11
tr|B8A8A0|B8A8A0_ORYSI Putative uncharacterized protein OS=Oryza...    70   7e-11
tr|A2ZT42|A2ZT42_ORYSJ Putative uncharacterized protein OS=Oryza...    70   7e-11
tr|Q84UC4|Q84UC4_ARATH HASTY OS=Arabidopsis thaliana GN=HASTY PE...    67   3e-10
tr|Q0WP44|Q0WP44_ARATH Putative uncharacterized protein At3g0504...    67   3e-10
tr|A9SY55|A9SY55_PHYPA Predicted protein OS=Physcomitrella paten...    57   4e-07
tr|A9TV45|A9TV45_PHYPA Predicted protein OS=Physcomitrella paten...    57   5e-07
tr|A4RVL3|A4RVL3_OSTLU Predicted protein OS=Ostreococcus lucimar...    42   0.012
tr|B6MY33|B6MY33_BRAFL Putative uncharacterized protein OS=Branc...    36   1.1  
tr|Q01BE3|Q01BE3_OSTTA Putative HASTY (ISS) (Fragment) OS=Ostreo...    33   7.1  
tr|B8A5N6|B8A5N6_DANRE Novel protein similar to vertebrate expor...    33   9.3  
tr|B0WF36|B0WF36_CULQU Reticulon/nogo receptor OS=Culex quinquef...    33   9.3  

>tr|A5ARV6|A5ARV6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038842 PE=4 SV=1
          Length = 170

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 34/53 (64%), Positives = 41/53 (77%)
 Frame = +3

Query: 12  QVIRHEDVSLWQGLLSKLVELSAVSPAYAELVLMVLRWLPEDITVYNEDLEGL 170
           +++R E +SLWQ LL  LV LS   P  AELV M+LRWLPEDITV+NEDLEG+
Sbjct: 118 EIVRREGLSLWQELLPSLVSLSNNGPIQAELVAMMLRWLPEDITVHNEDLEGM 170


>tr|A7Q5S1|A7Q5S1_VITVI Chromosome chr14 scaffold_54, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00031073001
           PE=4 SV=1
          Length = 1207

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/52 (65%), Positives = 40/52 (76%)
 Frame = +3

Query: 12  QVIRHEDVSLWQGLLSKLVELSAVSPAYAELVLMVLRWLPEDITVYNEDLEG 167
           +++R E +SLWQ LL  LV LS   P  AELV M+LRWLPEDITV+NEDLEG
Sbjct: 118 EIVRREGLSLWQELLPSLVSLSNNGPIQAELVAMMLRWLPEDITVHNEDLEG 169


>tr|Q5ZDB2|Q5ZDB2_ORYSJ cDNA clone:J013151I23, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0503E05.14 PE=2 SV=1
          Length = 1198

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 33/52 (63%), Positives = 39/52 (75%)
 Frame = +3

Query: 12  QVIRHEDVSLWQGLLSKLVELSAVSPAYAELVLMVLRWLPEDITVYNEDLEG 167
           +V+R E V+LW  LL  +V LS   P  AELV M+LRWLPEDITV+NEDLEG
Sbjct: 118 EVVRREGVALWNTLLPSIVSLSNNGPIEAELVAMILRWLPEDITVHNEDLEG 169


>tr|B8A8A0|B8A8A0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_01918 PE=4 SV=1
          Length = 1153

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 33/52 (63%), Positives = 39/52 (75%)
 Frame = +3

Query: 12  QVIRHEDVSLWQGLLSKLVELSAVSPAYAELVLMVLRWLPEDITVYNEDLEG 167
           +V+R E V+LW  LL  +V LS   P  AELV M+LRWLPEDITV+NEDLEG
Sbjct: 118 EVVRREGVALWNTLLPSIVSLSNNGPIEAELVAMILRWLPEDITVHNEDLEG 169


>tr|A2ZT42|A2ZT42_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_001714 PE=4 SV=1
          Length = 1861

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 33/52 (63%), Positives = 39/52 (75%)
 Frame = +3

Query: 12  QVIRHEDVSLWQGLLSKLVELSAVSPAYAELVLMVLRWLPEDITVYNEDLEG 167
           +V+R E V+LW  LL  +V LS   P  AELV M+LRWLPEDITV+NEDLEG
Sbjct: 118 EVVRREGVALWNTLLPSIVSLSNNGPIEAELVAMILRWLPEDITVHNEDLEG 169


>tr|Q84UC4|Q84UC4_ARATH HASTY OS=Arabidopsis thaliana GN=HASTY PE=1
           SV=1
          Length = 1202

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 30/52 (57%), Positives = 37/52 (71%)
 Frame = +3

Query: 12  QVIRHEDVSLWQGLLSKLVELSAVSPAYAELVLMVLRWLPEDITVYNEDLEG 167
           +++R E    WQ + + L  LSA  P  AELVLM LRWLPEDIT+YN+DLEG
Sbjct: 119 EIVRREGPDRWQEIFTLLTSLSAQGPLQAELVLMTLRWLPEDITIYNDDLEG 170


>tr|Q0WP44|Q0WP44_ARATH Putative uncharacterized protein At3g05040
           OS=Arabidopsis thaliana GN=At3g05040 PE=2 SV=1
          Length = 1202

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 30/52 (57%), Positives = 37/52 (71%)
 Frame = +3

Query: 12  QVIRHEDVSLWQGLLSKLVELSAVSPAYAELVLMVLRWLPEDITVYNEDLEG 167
           +++R E    WQ + + L  LSA  P  AELVLM LRWLPEDIT+YN+DLEG
Sbjct: 119 EIVRREGPDRWQEIFTLLTSLSAQGPLQAELVLMTLRWLPEDITIYNDDLEG 170


>tr|A9SY55|A9SY55_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_137344 PE=4 SV=1
          Length = 1205

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 26/52 (50%), Positives = 34/52 (65%)
 Frame = +3

Query: 12  QVIRHEDVSLWQGLLSKLVELSAVSPAYAELVLMVLRWLPEDITVYNEDLEG 167
           +V R E  SLW  +L  L  L + S  +AELV    RWLPED+T++NEDL+G
Sbjct: 121 EVTRREGPSLWNDILPALYTLGSSSALHAELVATFFRWLPEDVTIHNEDLDG 172


>tr|A9TV45|A9TV45_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_151199 PE=4 SV=1
          Length = 1201

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 24/52 (46%), Positives = 35/52 (67%)
 Frame = +3

Query: 12  QVIRHEDVSLWQGLLSKLVELSAVSPAYAELVLMVLRWLPEDITVYNEDLEG 167
           +V R E   LW+ +L  L  + ++S  +AELV    RWLPED+T++NEDL+G
Sbjct: 121 EVARREGPPLWKDMLPALYAMGSISALHAELVATFFRWLPEDVTIHNEDLDG 172


>tr|A4RVL3|A4RVL3_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_31015 PE=4 SV=1
          Length = 1196

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +3

Query: 12  QVIRHEDVSLWQGLLSKLVELSAVSPAY-AELVLMVLRWLPEDITVYNEDLEG 167
           + +R E  SLW  L+  LV ++    A  AE+ + V+R++ ED+ VYNED+ G
Sbjct: 75  ETVRQEGASLWTRLVPDLVSMTTGDEAQRAEMGVNVIRYVAEDVAVYNEDMIG 127