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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915120
Clone id YMU001_000066_G01
Library
Length 415
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATATTGAATTGAGTTCAAAAAATTTCAGAACCCCTTTTAAGGGTCTGCTAGTCCTCAGAA
TATAATCACTCTTTTAACCAATCGCCTCCCTGAATCAAACTCAAATCTGCATAACATGCA
TCCTGTGTAATTATACTATAGGACCAGTTGCCCCCCTTTCTTCATAAATGACGGAAAGGA
ATCAAACTCAAATCTGTATAACATACATCCTGGCACTCGCGCCAAGGCACGTGCATGTAA
GGTGATGACTAAAGCTCAAATGTCAGCAGTTGCATGTACTGCAACGGGATATCAGATGTA
CTCCATCTCAGCATCCTCATGAAACTCCGGTACTAGACAATCTTGCGAACTCCAGAATCT
ATCCGCCATCCCAATACAACTTCTGACGAGAAACATAACATACAAGTACCCATCT
■■Homology search results ■■ -
sp_hit_id P44340
Definition sp|P44340|HIS5_HAEIN Imidazole glycerol phosphate synthase subunit hisH OS=Haemophilus influenzae
Align length 56
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915120|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_G01.
         (415 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P44340|HIS5_HAEIN Imidazole glycerol phosphate synthase subun...    30   3.8  
sp|Q4QN71|HIS5_HAEI8 Imidazole glycerol phosphate synthase subun...    30   3.8  
sp|P16940|YIS2_SHISO Insertion element IS600 uncharacterized 31 ...    30   3.8  
sp|Q8QZ73|POLN_MAYAB Non-structural polyprotein OS=Mayaro virus ...    30   4.9  
sp|Q96QU1|PCD15_HUMAN Protocadherin-15 OS=Homo sapiens GN=PCDH15...    30   4.9  
sp|O22925|VSR2_ARATH Vacuolar-sorting receptor 2 OS=Arabidopsis ...    29   6.4  
sp|Q93VD3|CIPKN_ARATH CBL-interacting serine/threonine-protein k...    29   6.4  
sp|Q86M34|HEXB_ENTHI Beta-hexosaminidase subunit beta OS=Entamoe...    29   8.4  

>sp|P44340|HIS5_HAEIN Imidazole glycerol phosphate synthase subunit
           hisH OS=Haemophilus influenzae GN=hisH PE=3 SV=1
          Length = 199

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +2

Query: 41  GSASPQNIITLLTNRLPESNSNLHNMHPV*LYYRTSCPPFFINDGKESNSNLYNIH 208
           G+    N+I+  TNR+P++   L  M    + +  +CP F   DG   NS+ Y +H
Sbjct: 91  GNVPTLNLISGKTNRIPDTGLPLPQMGWNRVQFVKNCPLF---DGIVQNSHFYFVH 143


>sp|Q4QN71|HIS5_HAEI8 Imidazole glycerol phosphate synthase subunit
           hisH OS=Haemophilus influenzae (strain 86-028NP) GN=hisH
           PE=3 SV=1
          Length = 199

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +2

Query: 41  GSASPQNIITLLTNRLPESNSNLHNMHPV*LYYRTSCPPFFINDGKESNSNLYNIH 208
           G+    N+I+  TNR+P++   L  M    + +  +CP F   DG   NS+ Y +H
Sbjct: 91  GNVPTLNLISGKTNRIPDTGLPLPQMGWNRVQFVKNCPLF---DGIVQNSHFYFVH 143


>sp|P16940|YIS2_SHISO Insertion element IS600 uncharacterized 31 kDa
           protein OS=Shigella sonnei PE=4 SV=1
          Length = 272

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +3

Query: 171 TERNQTQICITYILALAPRHVHVR**LKLKCQQLHVLQRDIRCTPSQHPHETPVLDNLAN 350
           T R QT++    I+    R   +R  L+L+C+Q    +R  R T + + H  PV  NL N
Sbjct: 47  TRRLQTELAENGIIVGRDRLARLRKELRLRCKQ----KRKFRATTNSN-HNLPVAPNLLN 101

Query: 351 SRIYP 365
               P
Sbjct: 102 QTFAP 106


>sp|Q8QZ73|POLN_MAYAB Non-structural polyprotein OS=Mayaro virus
            (strain Brazil) PE=2 SV=2
          Length = 2436

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 273  HVLQRDIRCTPSQHPHETPVLDNLANSRIYPP 368
            H+ Q+ +R    QH  E P++D +   ++YPP
Sbjct: 1836 HLQQKSVR----QHDLEVPIMDRVIEEKVYPP 1863


>sp|Q96QU1|PCD15_HUMAN Protocadherin-15 OS=Homo sapiens GN=PCDH15 PE=1
            SV=2
          Length = 1955

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 78   PIASLNQTQ-ICITCILCNYTIGPVAPLSS*MTERNQTQICIT 203
            P AS   T+ +CIT + C   + P   + S MT+ + T +C T
Sbjct: 1831 PSASFLSTECVCITGVKCTTNLMPAEKIKSSMTQLSTTTVCKT 1873


>sp|O22925|VSR2_ARATH Vacuolar-sorting receptor 2 OS=Arabidopsis
           thaliana GN=VSR2 PE=2 SV=1
          Length = 625

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 149 CPPFFINDGKESNSNLYNIHPGTRAKARACKVMTKAQMSAVACTATGYQMY 301
           CPP FI DG +   ++      T  + R CK   K    +  C+ +G  +Y
Sbjct: 502 CPPGFIGDGLKECKDVNECEEKTACQCRDCK--CKNTWGSYECSCSGSLLY 550


>sp|Q93VD3|CIPKN_ARATH CBL-interacting serine/threonine-protein
           kinase 23 OS=Arabidopsis thaliana GN=CIPK23 PE=1 SV=1
          Length = 482

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 62  IITLLTNRLPESNSNLHNMHPV*LYYRTSCPPFFINDGKESNSNLYNIHPGTR 220
           +  L+   LP  +SNL +++        +CPP+F    K+    + + +P TR
Sbjct: 222 LFVLMAGYLPFEDSNLTSLYKKIFKAEFTCPPWFSASAKKLIKRILDPNPATR 274


>sp|Q86M34|HEXB_ENTHI Beta-hexosaminidase subunit beta OS=Entamoeba
           histolytica GN=HEXB PE=1 SV=1
          Length = 565

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 369 MADRFWSSQDCLVPEFHE 316
           +A+RFWSS+D   PE HE
Sbjct: 515 VAERFWSSEDITDPESHE 532
tr_hit_id B4J337
Definition tr|B4J337|B4J337_DROGR GH15398 OS=Drosophila grimshawi
Align length 74
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915120|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_G01.
         (415 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4J337|B4J337_DROGR GH15398 OS=Drosophila grimshawi GN=GH1539...    33   5.4  
tr|Q6LUB5|Q6LUB5_PHOPR Putative uncharacterized protein SA0089 O...    33   9.2  
tr|B3X2S4|B3X2S4_SHIDY ISSd1, transposase orfB OS=Shigella dysen...    33   9.3  

>tr|B4J337|B4J337_DROGR GH15398 OS=Drosophila grimshawi GN=GH15398
           PE=4 SV=1
          Length = 618

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +2

Query: 167 NDGKESNSNLYNIHPGTRAKARACKVMTKAQMSAVACTATGYQMYSISASS*NSGTRQSC 346
           +    +NSN  N +   +++  AC  +T A  +A A TATG    + SA++  S    + 
Sbjct: 130 SSSSNNNSNNNNNNNNNKSQNSACNTLTAASAAATATTATGAGTTTTSAAAAASAAAAAT 189

Query: 347 ELQNLSAIPIQLLT 388
                +A+    LT
Sbjct: 190 AAATAAAVTASTLT 203


>tr|Q6LUB5|Q6LUB5_PHOPR Putative uncharacterized protein SA0089
           OS=Photobacterium profundum GN=SA0089 PE=4 SV=1
          Length = 478

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +2

Query: 173 GKESNSNLYNIHPGTRAKARACKVMTKAQMSAVACTATGYQMYSISASS*NSGTRQSCEL 352
           GKE  + ++ +      K  AC   +KA +  VA T    Q+Y + +    +G    CE 
Sbjct: 389 GKEEKAVIFVLGASEETKGSACWASSKANILNVAVTRAKNQVYVVGSKKVWAGLSYFCEA 448

Query: 353 QNL 361
            NL
Sbjct: 449 SNL 451


>tr|B3X2S4|B3X2S4_SHIDY ISSd1, transposase orfB OS=Shigella
           dysenteriae 1012 GN=Sd1012_4313 PE=4 SV=1
          Length = 272

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = +3

Query: 171 TERNQTQICITYILALAPRHVHVR**LKLKCQQLHVLQRDIRCTPSQHPHETPVLDNLAN 350
           T R QT++    I+    R  H+R  L+L+C+Q    +R  R T + + H  PV  NL N
Sbjct: 47  TRRLQTELAENGIIVGRDRLAHLRKELRLRCKQ----KRKFRATTNPN-HNLPVAPNLLN 101

Query: 351 SRIYP 365
               P
Sbjct: 102 QTFAP 106