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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915121
Clone id YMU001_000066_G02
Library
Length 214
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAACCCATATGGTGTGTATACTGAGAAAGGTTCTCGAAAATGTTGACACTACATACAAGT
TCTAACAATGGTCATTCATACAGGAATTGACAAAATCCTCAGAAGTAGTCCCTCTTGTTG
GTGCTCTTACGAATTAACTTCCTCATCCTCTTCGATCTTCGGCGCCAAGTAAAATCTAAT
ATAGCCCATCTCTGCAATCTTGTACTCAACTACA
■■Homology search results ■■ -
sp_hit_id P24314
Definition sp|P24314|PCNA_CATRO Proliferating cell nuclear antigen OS=Catharanthus roseus
Align length 32
Score (bit) 56.6
E-value 4.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915121|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_G02.
         (214 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24314|PCNA_CATRO Proliferating cell nuclear antigen OS=Catha...    57   4e-08
sp|P17070|PCNA_ORYSJ Proliferating cell nuclear antigen OS=Oryza...    56   6e-08
sp|O82797|PCNA_TOBAC Proliferating cell nuclear antigen OS=Nicot...    54   2e-07
sp|P22177|PCNA_SOYBN Proliferating cell nuclear antigen (Fragmen...    54   3e-07
sp|O82134|PCNA_PEA Proliferating cell nuclear antigen OS=Pisum s...    54   3e-07
sp|Q43266|PCNA_MAIZE Proliferating cell nuclear antigen OS=Zea m...    53   4e-07
sp|Q43124|PCNA_BRANA Proliferating cell nuclear antigen OS=Brass...    52   7e-07
sp|Q9M7Q7|PCNA1_ARATH Proliferating cellular nuclear antigen 1 O...    52   9e-07
sp|Q00268|PCNA1_DAUCA Proliferating cell nuclear antigen OS=Dauc...    51   2e-06
sp|Q9MAY3|PCNA_POPNI Proliferating cell nuclear antigen OS=Popul...    50   3e-06
sp|Q00265|PCNA2_DAUCA Proliferating cell nuclear antigen large f...    50   3e-06
sp|Q9ZW35|PCNA2_ARATH Proliferating cell nuclear antigen 2 OS=Ar...    50   5e-06
sp|P53358|PCNA_STYCL Proliferating cell nuclear antigen OS=Styel...    45   1e-04
sp|P04961|PCNA_RAT Proliferating cell nuclear antigen OS=Rattus ...    43   4e-04
sp|P17918|PCNA_MOUSE Proliferating cell nuclear antigen OS=Mus m...    43   4e-04
sp|P61258|PCNA_MACFA Proliferating cell nuclear antigen OS=Macac...    43   4e-04
sp|P12004|PCNA_HUMAN Proliferating cell nuclear antigen OS=Homo ...    43   4e-04
sp|Q9DEA3|PCNA_CHICK Proliferating cell nuclear antigen OS=Gallu...    43   4e-04
sp|Q3ZBW4|PCNA_BOVIN Proliferating cell nuclear antigen OS=Bos t...    43   4e-04
sp|O02115|PCNA_CAEEL Proliferating cell nuclear antigen OS=Caeno...    43   6e-04
sp|O16852|PCNA_SARCR Proliferating cell nuclear antigen OS=Sarco...    42   7e-04
sp|Q6B6N4|PCNA_HAPBU Proliferating cell nuclear antigen OS=Haplo...    42   0.001
sp|P57761|PCNA_CRIGR Proliferating cell nuclear antigen OS=Crice...    42   0.001
sp|Q9DDF1|PCNA_COTJA Proliferating cell nuclear antigen OS=Cotur...    42   0.001
sp|Q9PTP1|PCNA_DANRE Proliferating cell nuclear antigen OS=Danio...    42   0.001
sp|Q9W644|PCNA_ANGJA Proliferating cell nuclear antigen OS=Angui...    42   0.001
sp|P18248|PCNA_XENLA Proliferating cell nuclear antigen OS=Xenop...    40   0.003
sp|O01377|PCNA_BOMMO Proliferating cell nuclear antigen OS=Bomby...    40   0.003
sp|P17917|PCNA_DROME Proliferating cell nuclear antigen OS=Droso...    39   0.006
sp|Q03392|PCNA_SCHPO Proliferating cell nuclear antigen OS=Schiz...    36   0.052

>sp|P24314|PCNA_CATRO Proliferating cell nuclear antigen
           OS=Catharanthus roseus PE=2 SV=1
          Length = 268

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEEVNS*EHQ 118
           VVEYKIAEMGYIRFYLAPKIEED+E  S E+Q
Sbjct: 236 VVEYKIAEMGYIRFYLAPKIEEDDEEQSLEYQ 267


>sp|P17070|PCNA_ORYSJ Proliferating cell nuclear antigen OS=Oryza
           sativa subsp. japonica GN=Os02g0805200 PE=2 SV=2
          Length = 263

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEEVNS 130
           VVEYKIAEMGYIRFYLAPKIEEDEE+ S
Sbjct: 236 VVEYKIAEMGYIRFYLAPKIEEDEEMKS 263


>sp|O82797|PCNA_TOBAC Proliferating cell nuclear antigen
           OS=Nicotiana tabacum GN=PCNA PE=2 SV=1
          Length = 264

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEE 139
           VVEYKIAEMGYIRFYLAPKIEEDEE
Sbjct: 236 VVEYKIAEMGYIRFYLAPKIEEDEE 260


>sp|P22177|PCNA_SOYBN Proliferating cell nuclear antigen (Fragment)
           OS=Glycine max PE=2 SV=1
          Length = 236

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEE 139
           VVEYKIAEMGY+RFYLAPKIEEDEE
Sbjct: 206 VVEYKIAEMGYVRFYLAPKIEEDEE 230


>sp|O82134|PCNA_PEA Proliferating cell nuclear antigen OS=Pisum
           sativum GN=PCNA PE=2 SV=1
          Length = 266

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEE 139
           VVEYKIAEMGY+RFYLAPKIEEDEE
Sbjct: 236 VVEYKIAEMGYVRFYLAPKIEEDEE 260


>sp|Q43266|PCNA_MAIZE Proliferating cell nuclear antigen OS=Zea mays
           GN=PCNA PE=2 SV=1
          Length = 263

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 24/26 (92%), Positives = 26/26 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEEV 136
           VVEYKIAEMGYIRFYLAPKIE+DEE+
Sbjct: 236 VVEYKIAEMGYIRFYLAPKIEDDEEM 261


>sp|Q43124|PCNA_BRANA Proliferating cell nuclear antigen OS=Brassica
           napus PE=2 SV=1
          Length = 263

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 23/25 (92%), Positives = 25/25 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEE 139
           VVEYK+AEMGYIR+YLAPKIEEDEE
Sbjct: 236 VVEYKVAEMGYIRYYLAPKIEEDEE 260


>sp|Q9M7Q7|PCNA1_ARATH Proliferating cellular nuclear antigen 1
           OS=Arabidopsis thaliana GN=PCNA PE=1 SV=2
          Length = 263

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 22/27 (81%), Positives = 26/27 (96%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEEVN 133
           VVEYK+AEMGYIR+YLAPKIEE+E+ N
Sbjct: 236 VVEYKVAEMGYIRYYLAPKIEEEEDTN 262


>sp|Q00268|PCNA1_DAUCA Proliferating cell nuclear antigen OS=Daucus
           carota PE=3 SV=1
          Length = 264

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 23/25 (92%), Positives = 25/25 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEE 139
           VVEYKIAEMGYIRFYLAPKIEE+E+
Sbjct: 236 VVEYKIAEMGYIRFYLAPKIEEEED 260


>sp|Q9MAY3|PCNA_POPNI Proliferating cell nuclear antigen OS=Populus
           nigra GN=PCNA PE=2 SV=1
          Length = 264

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDE 142
           VVEYKIAEMGY+RFYLAPK+EEDE
Sbjct: 236 VVEYKIAEMGYVRFYLAPKMEEDE 259
tr_hit_id Q0DWN6
Definition tr|Q0DWN6|Q0DWN6_ORYSJ Proliferating cell nuclear antigen OS=Oryza sativa subsp. japonica
Align length 28
Score (bit) 55.8
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915121|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_G02.
         (214 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0DWN6|Q0DWN6_ORYSJ Proliferating cell nuclear antigen OS=Ory...    56   1e-06
tr|A2XAR1|A2XAR1_ORYSI Proliferating cell nuclear antigen OS=Ory...    56   1e-06
tr|Q9ZPK8|Q9ZPK8_TOBAC Proliferating cell nuclear antigen OS=Nic...    54   4e-06
tr|Q9SB90|Q9SB90_TOBAC Proliferating cell nuclear antigen OS=Nic...    54   4e-06
tr|Q9FUI4|Q9FUI4_NICBE Proliferating cell nuclear antigen OS=Nic...    54   4e-06
tr|Q7DLP8|Q7DLP8_TOBAC Proliferating cell nuclear antigen OS=Nic...    54   5e-06
tr|B8A1C0|B8A1C0_MAIZE Putative uncharacterized protein OS=Zea m...    53   7e-06
tr|A5B6U5|A5B6U5_VITVI Proliferating cell nuclear antigen OS=Vit...    53   9e-06
tr|Q8H0Q1|Q8H0Q1_SOLLC Proliferating cell nuclear antigen OS=Sol...    52   1e-05
tr|Q9SAQ3|Q9SAQ3_MAIZE Proliferating cell nuclear antigen OS=Zea...    52   2e-05
tr|A5Z0S0|A5Z0S0_PHACN Proliferating cell nuclear antigen OS=Pha...    52   2e-05
tr|A1XCU7|A1XCU7_PHAVU Proliferating cell nuclear antigen OS=Pha...    52   2e-05
tr|A9TGV8|A9TGV8_PHYPA Proliferating cell nuclear antigen OS=Phy...    50   4e-05
tr|A9S3Y9|A9S3Y9_PHYPA Proliferating cell nuclear antigen OS=Phy...    50   4e-05
tr|A0PH64|A0PH64_POPTO Proliferating cell nuclear antigen OS=Pop...    49   1e-04
tr|A9P175|A9P175_PICSI Proliferating cell nuclear antigen OS=Pic...    49   2e-04
tr|O22396|O22396_9CHLO Proliferating cell nuclear antigen (Fragm...    45   0.002
tr|Q9I893|Q9I893_XENLA Proliferating cell nuclear antigen OS=Xen...    44   0.005
tr|Q6PF20|Q6PF20_XENLA Proliferating cell nuclear antigen OS=Xen...    44   0.005
tr|Q66KJ8|Q66KJ8_XENTR Proliferating cell nuclear antigen OS=Xen...    44   0.005
tr|B2L5B1|B2L5B1_XENBO Proliferating cell nuclear antigen (Fragm...    44   0.005
tr|Q6Y858|Q6Y858_SKECO Proliferating cell nuclear antigen (Fragm...    44   0.005
tr|Q4PKD8|Q4PKD8_AEDAL Proliferating cell nuclear antigen OS=Aed...    44   0.005
tr|Q4PKD7|Q4PKD7_AEDAE Proliferating cell nuclear antigen OS=Aed...    44   0.005
tr|B7QFN6|B7QFN6_IXOSC DNA polymerase delta processivity factor,...    44   0.005
tr|B0WPF0|B0WPF0_CULQU Proliferating cell nuclear antigen OS=Cul...    44   0.005
tr|Q9CZD6|Q9CZD6_MOUSE Proliferating cell nuclear antigen OS=Mus...    43   0.007
tr|Q91ZH2|Q91ZH2_MOUSE Proliferating cell nuclear antigen OS=Mus...    43   0.007
tr|Q542J9|Q542J9_MOUSE Proliferating cell nuclear antigen OS=Mus...    43   0.007
tr|O22665|O22665_DUNTE Proliferating cell nuclear antigen (Fragm...    43   0.007

>tr|Q0DWN6|Q0DWN6_ORYSJ Proliferating cell nuclear antigen OS=Oryza
           sativa subsp. japonica GN=Os02g0805200 PE=2 SV=1
          Length = 263

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEEVNS 130
           VVEYKIAEMGYIRFYLAPKIEEDEE+ S
Sbjct: 236 VVEYKIAEMGYIRFYLAPKIEEDEEMKS 263


>tr|A2XAR1|A2XAR1_ORYSI Proliferating cell nuclear antigen OS=Oryza
           sativa subsp. indica GN=OsI_09344 PE=3 SV=1
          Length = 263

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEEVNS 130
           VVEYKIAEMGYIRFYLAPKIEEDEE+ S
Sbjct: 236 VVEYKIAEMGYIRFYLAPKIEEDEEMKS 263


>tr|Q9ZPK8|Q9ZPK8_TOBAC Proliferating cell nuclear antigen
           OS=Nicotiana tabacum GN=PCNA-II PE=2 SV=1
          Length = 264

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEE 139
           VVEYKIAEMGYIRFYLAPKIEEDEE
Sbjct: 236 VVEYKIAEMGYIRFYLAPKIEEDEE 260


>tr|Q9SB90|Q9SB90_TOBAC Proliferating cell nuclear antigen
           OS=Nicotiana tabacum GN=PCNA PE=2 SV=1
          Length = 264

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEE 139
           VVEYKIAEMGYIRFYLAPKIEEDEE
Sbjct: 236 VVEYKIAEMGYIRFYLAPKIEEDEE 260


>tr|Q9FUI4|Q9FUI4_NICBE Proliferating cell nuclear antigen
           OS=Nicotiana benthamiana GN=PCNA PE=2 SV=1
          Length = 264

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEE 139
           VVEYKIAEMGYIRFYLAPKIEEDEE
Sbjct: 236 VVEYKIAEMGYIRFYLAPKIEEDEE 260


>tr|Q7DLP8|Q7DLP8_TOBAC Proliferating cell nuclear antigen
           OS=Nicotiana tabacum GN=PCNA1 PE=2 SV=1
          Length = 266

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEE 139
           VVEYKIAEMGY+RFYLAPKIEEDEE
Sbjct: 236 VVEYKIAEMGYVRFYLAPKIEEDEE 260


>tr|B8A1C0|B8A1C0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 263

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 24/26 (92%), Positives = 26/26 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEEV 136
           VVEYKIAEMGYIRFYLAPKIE+DEE+
Sbjct: 236 VVEYKIAEMGYIRFYLAPKIEDDEEM 261


>tr|A5B6U5|A5B6U5_VITVI Proliferating cell nuclear antigen OS=Vitis
           vinifera GN=GSVIVT00024178001 PE=3 SV=1
          Length = 266

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 24/25 (96%), Positives = 25/25 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEE 139
           VVEYKIAEMGYIRFYLAPKIEEDE+
Sbjct: 236 VVEYKIAEMGYIRFYLAPKIEEDED 260


>tr|Q8H0Q1|Q8H0Q1_SOLLC Proliferating cell nuclear antigen
           OS=Solanum lycopersicum GN=pcna PE=2 SV=1
          Length = 264

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 23/25 (92%), Positives = 25/25 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEE 139
           VVEYKIAEMGY+R+YLAPKIEEDEE
Sbjct: 236 VVEYKIAEMGYVRYYLAPKIEEDEE 260


>tr|Q9SAQ3|Q9SAQ3_MAIZE Proliferating cell nuclear antigen OS=Zea
           mays GN=ZmPCNA2 PE=2 SV=1
          Length = 263

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 23/26 (88%), Positives = 26/26 (100%)
 Frame = -2

Query: 213 VVEYKIAEMGYIRFYLAPKIEEDEEV 136
           VVEYKIAEMGYIRFYLAPKI++DEE+
Sbjct: 236 VVEYKIAEMGYIRFYLAPKIDDDEEM 261