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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915128
Clone id YMU001_000066_H02
Library
Length 362
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGGTAGCCCTCCCCTTTGTGTGGCATGACGAAGATGTCTACCTCCACTTATGTATTGAAT
GCTTTTACTTTGACCGCATTTACAATGCCTACGCATTTCACTCTTACATTGTTTGCCATC
TTGGCTCGGCAGGGGTGCCGGCCTACTTACCTCTAGACCTAGATGGTGCATCATCTTTTC
ACTCATGACGCATATTTGCATGCCACCATCTATGTAGACTTTTGAAATTCATTGCCCCTT
GATGTGAGTATCCAAGGTTGGCAAGATGTCGTCGAGATCCCTCTCAGAGATAGCCCCAGC
TATCCTGGGTCTTGATTTCCTGGCACTTACCATTTTCGTCCATTGCCTCCTCATTATGGG
TG
■■Homology search results ■■ -
sp_hit_id O30011
Definition sp|O30011|AROD_ARCFU 3-dehydroquinate dehydratase OS=Archaeoglobus fulgidus
Align length 43
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915128|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_H02.
         (362 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O30011|AROD_ARCFU 3-dehydroquinate dehydratase OS=Archaeoglob...    32   0.99 
sp|Q99LB7|SARDH_MOUSE Sarcosine dehydrogenase, mitochondrial OS=...    30   2.9  
sp|Q64380|SARDH_RAT Sarcosine dehydrogenase, mitochondrial OS=Ra...    30   4.9  
sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7 OS=P...    30   4.9  
sp|Q8R1T1|CHMP7_MOUSE Charged multivesicular body protein 7 OS=M...    30   4.9  
sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=H...    30   4.9  
sp|Q9UL12|SARDH_HUMAN Sarcosine dehydrogenase, mitochondrial OS=...    29   8.4  
sp|Q92570|NR4A3_HUMAN Nuclear receptor subfamily 4 group A membe...    29   8.4  
sp|Q88I82|DNAE2_PSEPK Error-prone DNA polymerase OS=Pseudomonas ...    29   8.4  

>sp|O30011|AROD_ARCFU 3-dehydroquinate dehydratase OS=Archaeoglobus
           fulgidus GN=aroD PE=1 SV=1
          Length = 196

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 30  EDVYLHLCIECFYFDRIYNAYAFHSYIVCHLGSAGVPAYLPLD 158
           +DV   L  E F F R+  AY    +I C++GS   P  + LD
Sbjct: 144 DDVVAFLMGERFSFTRVLAAYLGSPFIYCYVGSPKAPGQISLD 186


>sp|Q99LB7|SARDH_MOUSE Sarcosine dehydrogenase, mitochondrial OS=Mus
           musculus GN=Sardh PE=1 SV=1
          Length = 919

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 280 GSRRHLANLGYSHQGAMNFKSLHRWWHANMRHE*KDDAP 164
           G+R  L N GY    +++ +  +R WHA++R    DD+P
Sbjct: 756 GARHGLVNAGYRAIDSLSIEKGYRHWHADLR---PDDSP 791


>sp|Q64380|SARDH_RAT Sarcosine dehydrogenase, mitochondrial
           OS=Rattus norvegicus GN=Sardh PE=1 SV=2
          Length = 919

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 280 GSRRHLANLGYSHQGAMNFKSLHRWWHANMRHE*KDDAP 164
           G++  L N GY    +++ +  +R WHA++R    DD+P
Sbjct: 756 GAKHGLVNAGYRAIDSLSIEKGYRHWHADLR---SDDSP 791


>sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7
           OS=Pongo abelii GN=CHMP7 PE=2 SV=1
          Length = 453

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 213 IDGGMQICVMSEKMMHHLGLEVSRPAPLPSQDGKQCKSEMRRHCKCGQSK 64
           +D G+   + SE+++       SR     SQ+ ++CK E RR C+ G+ +
Sbjct: 237 VDVGVYQLMQSEQLL-------SRKVESLSQEAERCKEEARRACRAGKKQ 279


>sp|Q8R1T1|CHMP7_MOUSE Charged multivesicular body protein 7 OS=Mus
           musculus GN=Chmp7 PE=1 SV=1
          Length = 451

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 213 IDGGMQICVMSEKMMHHLGLEVSRPAPLPSQDGKQCKSEMRRHCKCGQSK 64
           +D G+   + SE+++       SR     SQ+ ++CK E RR C+ G+ +
Sbjct: 237 VDVGVYQLMQSEQLL-------SRKVESLSQESERCKEEARRACRAGKKQ 279


>sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=Homo
           sapiens GN=CHMP7 PE=1 SV=1
          Length = 453

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 213 IDGGMQICVMSEKMMHHLGLEVSRPAPLPSQDGKQCKSEMRRHCKCGQSK 64
           +D G+   + SE+++       SR     SQ+ ++CK E RR C+ G+ +
Sbjct: 237 VDVGVYQLMQSEQLL-------SRKVESLSQEAERCKEEARRACRAGKKQ 279


>sp|Q9UL12|SARDH_HUMAN Sarcosine dehydrogenase, mitochondrial
           OS=Homo sapiens GN=SARDH PE=1 SV=1
          Length = 918

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 280 GSRRHLANLGYSHQGAMNFKSLHRWWHANMRHE*KDDAP 164
           G++  L N GY    +++ +  +R WHA++R    DD+P
Sbjct: 755 GAKHGLINAGYRAIDSLSIEKGYRHWHADLR---PDDSP 790


>sp|Q92570|NR4A3_HUMAN Nuclear receptor subfamily 4 group A member 3
           OS=Homo sapiens GN=NR4A3 PE=2 SV=3
          Length = 626

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 268 VVEIPLRDSPSYPGS*FPGTYHFRPLPPH 354
           +++ P++  P+  G+ FP  +HF+P PPH
Sbjct: 172 LLDPPMKAVPTVAGARFP-LFHFKPSPPH 199


>sp|Q88I82|DNAE2_PSEPK Error-prone DNA polymerase OS=Pseudomonas
           putida (strain KT2440) GN=dnaE2 PE=3 SV=1
          Length = 1033

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 114 KQCKSEMRRHCKCGQSKSIQYISGGRHLRHATQ 16
           + C + +R+HC+  ++    + +G RHLR   Q
Sbjct: 201 QDCMTAIRQHCQVSEAGRFLFANGERHLRSQAQ 233
tr_hit_id B7QN55
Definition tr|B7QN55|B7QN55_IXOSC Putative uncharacterized protein OS=Ixodes scapularis
Align length 32
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915128|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_H02.
         (362 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7QN55|B7QN55_IXOSC Putative uncharacterized protein OS=Ixode...    35   1.9  
tr|Q0HU87|Q0HU87_SHESR Putative uncharacterized protein OS=Shewa...    33   7.2  
tr|Q0HHY7|Q0HHY7_SHESM Putative uncharacterized protein OS=Shewa...    33   9.3  
tr|A9REB0|A9REB0_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.3  

>tr|B7QN55|B7QN55_IXOSC Putative uncharacterized protein OS=Ixodes
           scapularis GN=IscW_ISCW023895 PE=4 SV=1
          Length = 953

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 87  AYAFHSYIVCHLGSAGVPAYLPLDLDGASSFH 182
           A+++H  +V H+  +GVP ++PLD DG    H
Sbjct: 584 AHSYHENMVRHVDESGVPVFVPLDEDGKPRLH 615


>tr|Q0HU87|Q0HU87_SHESR Putative uncharacterized protein
           OS=Shewanella sp. (strain MR-7) GN=Shewmr7_2331 PE=4
           SV=1
          Length = 279

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 168 HHLGLEVSRPAPLPSQDGKQCKSEMRRHCKCGQSKSIQYISGGRHL 31
           H L L +  PAPL  +  +Q K+ M  H     S+ + Y SGG HL
Sbjct: 60  HGLSLSIGSPAPLDLEFVRQVKAFMDLHQIDVYSEHLSYCSGGGHL 105


>tr|Q0HHY7|Q0HHY7_SHESM Putative uncharacterized protein
           OS=Shewanella sp. (strain MR-4) GN=Shewmr4_2259 PE=4
           SV=1
          Length = 279

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 168 HHLGLEVSRPAPLPSQDGKQCKSEMRRHCKCGQSKSIQYISGGRHL 31
           H L L +  PAPL  +  +Q K+ M  H     S+ + Y SGG HL
Sbjct: 60  HGLSLSIGSPAPLDLEFVRQVKAFMDLHQIEVYSEHLSYCSGGGHL 105


>tr|A9REB0|A9REB0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64990 PE=4 SV=1
          Length = 494

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -3

Query: 273 DDILPTLDTHIKGQ*ISKVYIDGGMQICVMSEKMMHHLGLEVSRPAPL 130
           D   PT+D  I G  IS V +DGG  + +M+  +M  L LE   P  L
Sbjct: 420 DPSAPTIDVSIDGIMISDVQVDGGSNVNLMNVDIMDALDLEHLVPMTL 467