BP915128
Clone id YMU001_000066_H02
Library
Length 362
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GGGTAGCCCTCCCCTTTGTGTGGCATGACGAAGATGTCTACCTCCACTTATGTATTGAAT
GCTTTTACTTTGACCGCATTTACAATGCCTACGCATTTCACTCTTACATTGTTTGCCATC
TTGGCTCGGCAGGGGTGCCGGCCTACTTACCTCTAGACCTAGATGGTGCATCATCTTTTC
ACTCATGACGCATATTTGCATGCCACCATCTATGTAGACTTTTGAAATTCATTGCCCCTT
GATGTGAGTATCCAAGGTTGGCAAGATGTCGTCGAGATCCCTCTCAGAGATAGCCCCAGC
TATCCTGGGTCTTGATTTCCTGGCACTTACCATTTTCGTCCATTGCCTCCTCATTATGGG
TG
■■Homology search results ■■ -
sp_hit_id O30011
Definition sp|O30011|AROD_ARCFU 3-dehydroquinate dehydratase OS=Archaeoglobus fulgidus
Align length 43
Score (bit) 32.0
E-value 0.99
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915128|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_H02.
(362 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O30011|AROD_ARCFU 3-dehydroquinate dehydratase OS=Archaeoglob... 32 0.99
sp|Q99LB7|SARDH_MOUSE Sarcosine dehydrogenase, mitochondrial OS=... 30 2.9
sp|Q64380|SARDH_RAT Sarcosine dehydrogenase, mitochondrial OS=Ra... 30 4.9
sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7 OS=P... 30 4.9
sp|Q8R1T1|CHMP7_MOUSE Charged multivesicular body protein 7 OS=M... 30 4.9
sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=H... 30 4.9
sp|Q9UL12|SARDH_HUMAN Sarcosine dehydrogenase, mitochondrial OS=... 29 8.4
sp|Q92570|NR4A3_HUMAN Nuclear receptor subfamily 4 group A membe... 29 8.4
sp|Q88I82|DNAE2_PSEPK Error-prone DNA polymerase OS=Pseudomonas ... 29 8.4

>sp|O30011|AROD_ARCFU 3-dehydroquinate dehydratase OS=Archaeoglobus
fulgidus GN=aroD PE=1 SV=1
Length = 196

Score = 32.0 bits (71), Expect = 0.99
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3

Query: 30 EDVYLHLCIECFYFDRIYNAYAFHSYIVCHLGSAGVPAYLPLD 158
+DV L E F F R+ AY +I C++GS P + LD
Sbjct: 144 DDVVAFLMGERFSFTRVLAAYLGSPFIYCYVGSPKAPGQISLD 186


>sp|Q99LB7|SARDH_MOUSE Sarcosine dehydrogenase, mitochondrial OS=Mus
musculus GN=Sardh PE=1 SV=1
Length = 919

Score = 30.4 bits (67), Expect = 2.9
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2

Query: 280 GSRRHLANLGYSHQGAMNFKSLHRWWHANMRHE*KDDAP 164
G+R L N GY +++ + +R WHA++R DD+P
Sbjct: 756 GARHGLVNAGYRAIDSLSIEKGYRHWHADLR---PDDSP 791


>sp|Q64380|SARDH_RAT Sarcosine dehydrogenase, mitochondrial
OS=Rattus norvegicus GN=Sardh PE=1 SV=2
Length = 919

Score = 29.6 bits (65), Expect = 4.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2

Query: 280 GSRRHLANLGYSHQGAMNFKSLHRWWHANMRHE*KDDAP 164
G++ L N GY +++ + +R WHA++R DD+P
Sbjct: 756 GAKHGLVNAGYRAIDSLSIEKGYRHWHADLR---SDDSP 791


>sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7
OS=Pongo abelii GN=CHMP7 PE=2 SV=1
Length = 453

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3

Query: 213 IDGGMQICVMSEKMMHHLGLEVSRPAPLPSQDGKQCKSEMRRHCKCGQSK 64
+D G+ + SE+++ SR SQ+ ++CK E RR C+ G+ +
Sbjct: 237 VDVGVYQLMQSEQLL-------SRKVESLSQEAERCKEEARRACRAGKKQ 279


>sp|Q8R1T1|CHMP7_MOUSE Charged multivesicular body protein 7 OS=Mus
musculus GN=Chmp7 PE=1 SV=1
Length = 451

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3

Query: 213 IDGGMQICVMSEKMMHHLGLEVSRPAPLPSQDGKQCKSEMRRHCKCGQSK 64
+D G+ + SE+++ SR SQ+ ++CK E RR C+ G+ +
Sbjct: 237 VDVGVYQLMQSEQLL-------SRKVESLSQESERCKEEARRACRAGKKQ 279


>sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=Homo
sapiens GN=CHMP7 PE=1 SV=1
Length = 453

Score = 29.6 bits (65), Expect = 4.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3

Query: 213 IDGGMQICVMSEKMMHHLGLEVSRPAPLPSQDGKQCKSEMRRHCKCGQSK 64
+D G+ + SE+++ SR SQ+ ++CK E RR C+ G+ +
Sbjct: 237 VDVGVYQLMQSEQLL-------SRKVESLSQEAERCKEEARRACRAGKKQ 279


>sp|Q9UL12|SARDH_HUMAN Sarcosine dehydrogenase, mitochondrial
OS=Homo sapiens GN=SARDH PE=1 SV=1
Length = 918

Score = 28.9 bits (63), Expect = 8.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2

Query: 280 GSRRHLANLGYSHQGAMNFKSLHRWWHANMRHE*KDDAP 164
G++ L N GY +++ + +R WHA++R DD+P
Sbjct: 755 GAKHGLINAGYRAIDSLSIEKGYRHWHADLR---PDDSP 790


>sp|Q92570|NR4A3_HUMAN Nuclear receptor subfamily 4 group A member 3
OS=Homo sapiens GN=NR4A3 PE=2 SV=3
Length = 626

Score = 28.9 bits (63), Expect = 8.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1

Query: 268 VVEIPLRDSPSYPGS*FPGTYHFRPLPPH 354
+++ P++ P+ G+ FP +HF+P PPH
Sbjct: 172 LLDPPMKAVPTVAGARFP-LFHFKPSPPH 199


>sp|Q88I82|DNAE2_PSEPK Error-prone DNA polymerase OS=Pseudomonas
putida (strain KT2440) GN=dnaE2 PE=3 SV=1
Length = 1033

Score = 28.9 bits (63), Expect = 8.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3

Query: 114 KQCKSEMRRHCKCGQSKSIQYISGGRHLRHATQ 16
+ C + +R+HC+ ++ + +G RHLR Q
Sbjct: 201 QDCMTAIRQHCQVSEAGRFLFANGERHLRSQAQ 233


tr_hit_id B7QN55
Definition tr|B7QN55|B7QN55_IXOSC Putative uncharacterized protein OS=Ixodes scapularis
Align length 32
Score (bit) 35.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915128|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_H02.
(362 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7QN55|B7QN55_IXOSC Putative uncharacterized protein OS=Ixode... 35 1.9
tr|Q0HU87|Q0HU87_SHESR Putative uncharacterized protein OS=Shewa... 33 7.2
tr|Q0HHY7|Q0HHY7_SHESM Putative uncharacterized protein OS=Shewa... 33 9.3
tr|A9REB0|A9REB0_PHYPA Predicted protein OS=Physcomitrella paten... 33 9.3

>tr|B7QN55|B7QN55_IXOSC Putative uncharacterized protein OS=Ixodes
scapularis GN=IscW_ISCW023895 PE=4 SV=1
Length = 953

Score = 35.0 bits (79), Expect = 1.9
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3

Query: 87 AYAFHSYIVCHLGSAGVPAYLPLDLDGASSFH 182
A+++H +V H+ +GVP ++PLD DG H
Sbjct: 584 AHSYHENMVRHVDESGVPVFVPLDEDGKPRLH 615


>tr|Q0HU87|Q0HU87_SHESR Putative uncharacterized protein
OS=Shewanella sp. (strain MR-7) GN=Shewmr7_2331 PE=4
SV=1
Length = 279

Score = 33.1 bits (74), Expect = 7.2
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3

Query: 168 HHLGLEVSRPAPLPSQDGKQCKSEMRRHCKCGQSKSIQYISGGRHL 31
H L L + PAPL + +Q K+ M H S+ + Y SGG HL
Sbjct: 60 HGLSLSIGSPAPLDLEFVRQVKAFMDLHQIDVYSEHLSYCSGGGHL 105


>tr|Q0HHY7|Q0HHY7_SHESM Putative uncharacterized protein
OS=Shewanella sp. (strain MR-4) GN=Shewmr4_2259 PE=4
SV=1
Length = 279

Score = 32.7 bits (73), Expect = 9.3
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3

Query: 168 HHLGLEVSRPAPLPSQDGKQCKSEMRRHCKCGQSKSIQYISGGRHL 31
H L L + PAPL + +Q K+ M H S+ + Y SGG HL
Sbjct: 60 HGLSLSIGSPAPLDLEFVRQVKAFMDLHQIEVYSEHLSYCSGGGHL 105


>tr|A9REB0|A9REB0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_64990 PE=4 SV=1
Length = 494

Score = 32.7 bits (73), Expect = 9.3
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3

Query: 273 DDILPTLDTHIKGQ*ISKVYIDGGMQICVMSEKMMHHLGLEVSRPAPL 130
D PT+D I G IS V +DGG + +M+ +M L LE P L
Sbjct: 420 DPSAPTIDVSIDGIMISDVQVDGGSNVNLMNVDIMDALDLEHLVPMTL 467