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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915130
Clone id YMU001_000066_H04
Library
Length 368
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATGTGGAGCTTTGCTCCTATACAACGATTTTATCGTGGTCTCTTGCATGTCTTTGCCGT
CATAAAAATGGCTCTCTATCTATTGGCATTGTTATGACAAGTGTCTCCCTATCTATCTCC
CATTAAGCTCTACTACTTTCATGCTTGATCTGCTGTGGCAAATACAAAGCTAAAAAACAT
TTGCAAGTACACATCATTGGGACTAACATCTTGCTTGTATATTATGTCATACTCTGGTTG
AATTCGACCATATTCGTCTCCAAACTCGAAGTCTGGATCCAATTTCTCCAACTCAGCTGT
GTGGAGCCCAGTGGAGTCAAAAGGGCTTCTAAAGCCTTGATGTCAGTGAGACTCATTCCC
TCGCTCAT
■■Homology search results ■■ -
sp_hit_id Q8RH70
Definition sp|Q8RH70|SYN_FUSNN Asparaginyl-tRNA synthetase OS=Fusobacterium nucleatum subsp. nucleatum
Align length 62
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915130|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_H04.
         (368 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8RH70|SYN_FUSNN Asparaginyl-tRNA synthetase OS=Fusobacterium...    32   0.99 
sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavi...    31   2.2  
sp|Q8P1K0|SYFB_STRP8 Phenylalanyl-tRNA synthetase beta chain OS=...    30   2.9  
sp|Q5XCX3|SYFB_STRP6 Phenylalanyl-tRNA synthetase beta chain OS=...    30   2.9  
sp|Q8K820|SYFB_STRP3 Phenylalanyl-tRNA synthetase beta chain OS=...    30   2.9  
sp|Q48UC5|SYFB_STRPM Phenylalanyl-tRNA synthetase beta chain OS=...    30   3.7  
sp|Q9A0I0|SYFB_STRP1 Phenylalanyl-tRNA synthetase beta chain OS=...    30   3.7  
sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidem...    29   6.4  
sp|Q5M3S7|SYFB_STRT2 Phenylalanyl-tRNA synthetase beta chain OS=...    29   8.3  
sp|Q5LZ72|SYFB_STRT1 Phenylalanyl-tRNA synthetase beta chain OS=...    29   8.3  
sp|P0C6W0|R1AB_BC512 Replicase polyprotein 1ab OS=Bat coronaviru...    29   8.3  

>sp|Q8RH70|SYN_FUSNN Asparaginyl-tRNA synthetase OS=Fusobacterium
           nucleatum subsp. nucleatum GN=asnS PE=3 SV=1
          Length = 461

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -3

Query: 333 FRSPFDSTGLHTAELEKLDPDFEFGD-----EYGRIQPEYDIIYKQDVSPNDVYLQMFFS 169
           FR+ + +T  H +E   ++P+  FGD     E      +Y I Y  D  P +  ++ F S
Sbjct: 228 FRAEYSNTARHASEFWMVEPEIAFGDIFALMELAEAMVKYIIKYVMDNCPEE--MEFFNS 285

Query: 168 FV 163
           F+
Sbjct: 286 FI 287


>sp|P0C6X5|R1AB_CVHNL Replicase polyprotein 1ab OS=Human coronavirus
            NL63 GN=rep PE=3 SV=1
          Length = 6729

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -3

Query: 351  SH*HQGFRSPFDSTGLHTAELEKLDPDFEFGDEYGRIQPEYDIIYKQDVS 202
            SH  Q  R+P  +     + + KL P F   D Y  + P Y +I KQ ++
Sbjct: 5200 SHNVQPLRAPTIANQEKYSSIYKLHPAFNVSDAYANLVPYYQLIGKQKIT 5249


>sp|Q8P1K0|SYFB_STRP8 Phenylalanyl-tRNA synthetase beta chain
           OS=Streptococcus pyogenes serotype M18 GN=pheT PE=3 SV=1
          Length = 801

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
 Frame = -1

Query: 368 MSEGMSLTDI---------KALEALLTPLGSTQLSWRNWIQTSSLETNMV 246
           ++EG+ LT+I         KA+E  + P   T+L W   ++ S+L  NMV
Sbjct: 506 LAEGLGLTEIISYALTTPEKAIEFAVAPSHLTELMWPMSVERSALRQNMV 555


>sp|Q5XCX3|SYFB_STRP6 Phenylalanyl-tRNA synthetase beta chain
           OS=Streptococcus pyogenes serotype M6 GN=pheT PE=1 SV=2
          Length = 801

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
 Frame = -1

Query: 368 MSEGMSLTDI---------KALEALLTPLGSTQLSWRNWIQTSSLETNMV 246
           ++EG+ LT+I         KA+E  + P   T+L W   ++ S+L  NMV
Sbjct: 506 LAEGLGLTEIISYALTTPEKAIEFAVAPSHLTELMWPMSVERSALRQNMV 555


>sp|Q8K820|SYFB_STRP3 Phenylalanyl-tRNA synthetase beta chain
           OS=Streptococcus pyogenes serotype M3 GN=pheT PE=3 SV=2
          Length = 801

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
 Frame = -1

Query: 368 MSEGMSLTDI---------KALEALLTPLGSTQLSWRNWIQTSSLETNMV 246
           ++EG+ LT+I         KA+E  + P   T+L W   ++ S+L  NMV
Sbjct: 506 LAEGLGLTEIISYALTTPEKAIEFAVAPSHLTELMWPMSVERSALRQNMV 555


>sp|Q48UC5|SYFB_STRPM Phenylalanyl-tRNA synthetase beta chain
           OS=Streptococcus pyogenes serotype M28 GN=pheT PE=3 SV=1
          Length = 806

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
 Frame = -1

Query: 368 MSEGMSLTDI---------KALEALLTPLGSTQLSWRNWIQTSSLETNMV 246
           ++EG+ LT+I         KA+E  + P   T+L W   ++ S+L  NMV
Sbjct: 511 LAEGLGLTEIISYALTTPEKAVEFAVAPSHLTELMWPMSVERSALRQNMV 560


>sp|Q9A0I0|SYFB_STRP1 Phenylalanyl-tRNA synthetase beta chain
           OS=Streptococcus pyogenes serotype M1 GN=pheT PE=3 SV=1
          Length = 801

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
 Frame = -1

Query: 368 MSEGMSLTDI---------KALEALLTPLGSTQLSWRNWIQTSSLETNMV 246
           ++EG+ LT+I         KA+E  + P   T+L W   ++ S+L  NMV
Sbjct: 506 LAEGLGLTEIISYALTTPEKAVEFAVAPSHLTELMWPMSVERSALRQNMV 555


>sp|P0C6Y4|R1AB_PEDV7 Replicase polyprotein 1ab OS=Porcine epidemic
            diarrhea virus (strain CV777) GN=rep PE=3 SV=1
          Length = 6781

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 351  SH*HQGFRSPFDSTGLHTAELEKLDPDFEFGDEYGRIQPEYDIIYKQDVS 202
            SH  Q  R+P  +     + + KL P F   + Y  + P Y +I KQ ++
Sbjct: 5257 SHNVQPLRAPTIANQERYSTIHKLHPAFNIPEAYSSLVPYYQLIGKQKIT 5306


>sp|Q5M3S7|SYFB_STRT2 Phenylalanyl-tRNA synthetase beta chain
           OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG
           18311) GN=pheT PE=3 SV=2
          Length = 802

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
 Frame = -1

Query: 368 MSEGMSLTDI---------KALEALLTPLGSTQLSWRNWIQTSSLETNMV 246
           ++EG  LT+I         KA+E   TP   T+L W   +  S+L  N+V
Sbjct: 507 IAEGAGLTEIISYTLTTPEKAVEFAATPSNLTELMWPMTVDRSALRQNLV 556


>sp|Q5LZ72|SYFB_STRT1 Phenylalanyl-tRNA synthetase beta chain
           OS=Streptococcus thermophilus (strain CNRZ 1066) GN=pheT
           PE=3 SV=2
          Length = 802

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
 Frame = -1

Query: 368 MSEGMSLTDI---------KALEALLTPLGSTQLSWRNWIQTSSLETNMV 246
           ++EG  LT+I         KA+E   TP   T+L W   +  S+L  N+V
Sbjct: 507 IAEGAGLTEIISYTLTTPEKAVEFAATPSNLTELMWPMTVDRSALRQNLV 556
tr_hit_id B6LEI8
Definition tr|B6LEI8|B6LEI8_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 23
Score (bit) 34.3
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915130|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_H04.
         (368 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6LEI8|B6LEI8_BRAFL Putative uncharacterized protein OS=Branc...    34   3e-04
tr|B6LEG7|B6LEG7_BRAFL Putative uncharacterized protein OS=Branc...    34   0.001
tr|A9SEU5|A9SEU5_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.13 
tr|A9JTY1|A9JTY1_XENTR LOC100127880 protein (Fragment) OS=Xenopu...    30   0.19 
tr|A9SPQ7|A9SPQ7_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.4  
tr|A7RVM5|A7RVM5_NEMVE Predicted protein OS=Nematostella vectens...    35   1.9  
tr|B3RXV7|B3RXV7_TRIAD Putative uncharacterized protein OS=Trich...    34   3.2  
tr|Q5C4M2|Q5C4M2_SCHJA SJCHGC08782 protein (Fragment) OS=Schisto...    33   5.4  
tr|Q79VI1|Q79VI1_CORGL RNA polymerase sigma factor OS=Corynebact...    33   9.3  
tr|A4QCA2|A4QCA2_CORGB RNA polymerase sigma factor OS=Corynebact...    33   9.3  
tr|A7QUN3|A7QUN3_VITVI Chromosome chr10 scaffold_179, whole geno...    33   9.3  
tr|A5AW52|A5AW52_VITVI Putative uncharacterized protein OS=Vitis...    33   9.3  
tr|A9V0Y4|A9V0Y4_MONBE Predicted protein OS=Monosiga brevicollis...    33   9.3  

>tr|B6LEI8|B6LEI8_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_119155 PE=4 SV=1
          Length = 192

 Score = 34.3 bits (77), Expect(2) = 3e-04
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = -3

Query: 246 RIQPEYDIIYKQDVSPNDVYLQM 178
           R QPEYD+++KQ V+  D++LQM
Sbjct: 86  RPQPEYDVVFKQAVTSEDMFLQM 108



 Score = 33.1 bits (74), Expect(2) = 3e-04
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = -1

Query: 188 TCKCFLALYLPQQIKHESSRA*WEIDRETLVITMPIDRE 72
           T K  L L+LP  +  ++ RA W  D+ETLV+T+ + R+
Sbjct: 148 TPKYKLGLHLPHPVDSKNGRAQWVQDQETLVVTLRMVRD 186


>tr|B6LEG7|B6LEG7_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_119143 PE=4 SV=1
          Length = 192

 Score = 34.3 bits (77), Expect(2) = 0.001
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = -3

Query: 246 RIQPEYDIIYKQDVSPNDVYLQM 178
           R QPEYD+++KQ V+  D++LQM
Sbjct: 86  RPQPEYDVVFKQAVTSEDMFLQM 108



 Score = 30.8 bits (68), Expect(2) = 0.001
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 188 TCKCFLALYLPQQIKHESSRA*WEIDRETLVITMPIDRE 72
           T K  L L+LP  +  ++ RA W  D+E LV+T+ + R+
Sbjct: 148 TPKYKLGLHLPHPVDSKNGRAQWVQDQEMLVVTLRMVRD 186


>tr|A9SEU5|A9SEU5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_229100 PE=4 SV=1
          Length = 122

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 20/38 (52%), Positives = 23/38 (60%)
 Frame = -3

Query: 282 LDPDFEFGDEYGRIQPEYDIIYKQDVSPNDVYLQMFFS 169
           +D D E      R  PEY  +YKQ VS NDVY+QM FS
Sbjct: 67  IDKDAELHGR-ARFTPEYAFVYKQAVSCNDVYMQMVFS 103


>tr|A9JTY1|A9JTY1_XENTR LOC100127880 protein (Fragment) OS=Xenopus
           tropicalis GN=LOC100127880 PE=2 SV=1
          Length = 201

 Score = 30.4 bits (67), Expect(2) = 0.19
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 246 RIQPEYDIIYKQDVSPNDVYLQM 178
           R QPEY+I++KQ V   D++L M
Sbjct: 94  REQPEYEILFKQQVGTEDMFLGM 116



 Score = 27.3 bits (59), Expect(2) = 0.19
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 188 TCKCFLALYLPQQIKHESSRA*WEIDRETLVITMPIDRE 72
           T K  LAL+LP  +  ++ +A +  D E+L +T+ + RE
Sbjct: 156 TPKHKLALHLPYPVDSDNGKAKFVSDTESLEVTLTMTRE 194


>tr|A9SPQ7|A9SPQ7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_82265 PE=4 SV=1
          Length = 213

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = -3

Query: 282 LDPDFEFGDEYGRIQPEYDIIYKQDVSPNDVYLQM 178
           +D D E      R  PEY  +YKQ VS NDVY+QM
Sbjct: 95  IDKDAELHGR-ARFTPEYAFVYKQAVSCNDVYMQM 128


>tr|A7RVM5|A7RVM5_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g182461 PE=4 SV=1
          Length = 187

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -3

Query: 294 ELEKLDPDFEFGDEYG-RIQPEYDIIYKQDVSPNDVYLQM 178
           E E++       DE+  R  PEYD+++KQ +SP +++LQM
Sbjct: 64  EPEEIPDSAHAEDEFDPRPSPEYDMVFKQAISPEEMFLQM 103


>tr|B3RXV7|B3RXV7_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_63939 PE=4 SV=1
          Length = 190

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = -3

Query: 246 RIQPEYDIIYKQDVSPNDVYLQM 178
           R QPEYD+ + Q VS  DVYLQM
Sbjct: 84  REQPEYDLKFSQSVSSEDVYLQM 106



 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -1

Query: 173 LALYLPQQIKHESSRA*WEIDRETLVITMPIDRE 72
           LALYLP ++  ++ +A W+  +E L IT+ + RE
Sbjct: 151 LALYLPHKVDSKNGKAQWDKAKEELNITLRVQRE 184


>tr|Q5C4M2|Q5C4M2_SCHJA SJCHGC08782 protein (Fragment)
           OS=Schistosoma japonicum PE=2 SV=2
          Length = 188

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = -3

Query: 246 RIQPEYDIIYKQDVSPNDVYLQM 178
           R QP+Y+I+Y+Q V+  DVYLQ+
Sbjct: 86  RPQPKYEIVYRQAVTAEDVYLQL 108



 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -1

Query: 173 LALYLPQQIKHESSRA*WEIDRETLVITMPIDRE 72
           LAL+LP  ++ +SS+A W  D+E L +T+   RE
Sbjct: 153 LALHLPNPVEPDSSKAAWNKDKEMLEVTLRNKRE 186


>tr|Q79VI1|Q79VI1_CORGL RNA polymerase sigma factor
           OS=Corynebacterium glutamicum GN=sigH PE=3 SV=1
          Length = 206

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -3

Query: 315 STGLHTAELEKLD--PDFEFGDEYGRIQPEYD-IIYKQDV 205
           STGL +AE+E L   PD + GD   ++ PEY  ++Y  DV
Sbjct: 111 STGLESAEVEALKNLPDGKIGDAMNQLSPEYRMVVYYADV 150


>tr|A4QCA2|A4QCA2_CORGB RNA polymerase sigma factor
           OS=Corynebacterium glutamicum (strain R) GN=cgR_0876
           PE=3 SV=1
          Length = 206

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -3

Query: 315 STGLHTAELEKLD--PDFEFGDEYGRIQPEYD-IIYKQDV 205
           STGL +AE+E L   PD + GD   ++ PEY  ++Y  DV
Sbjct: 111 STGLESAEVEALKNLPDGKIGDAMNQLSPEYRMVVYYADV 150