BP915136
Clone id YMU001_000066_H10
Library
Length 496
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000066_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AACCCGTCCAACCATGTCTATGCCTCCAGCAGCTATGCCTCCAGCAGCGCAAGGATATAG
TCCTCGCCAGAATTTTGGACATGTTTTGCCCTCTCCAAGTACTCCATACGGGCACAATTT
TGCAGGCGCGCAAGGAAGACCAAGTACGCCTCTCCCTCCTCAATATCGGGGCCCTACAGC
GGATCCTCAGTATAGAGGGCCGTAGGCCTACTGACATACAGTAGCATTGAATTAGTGTAG
TTTTAGCTTCGGTGTTCTTGTTGTATCAACGGGTTGGAGCTCTTTGCAGTCTGCTATATT
GGGTATTTGAAGAAGCGTTAGCGATGGTTTGGCATTGATCCATTGTTCGCTGGGATCTTC
AATTGGTACGAGGTTTACTCTCATATACAGTAGTGGAAGATATATTTGTTTTGAATATGT
AGTGAAATATTAGACATTTTGGTAAACAAAGCATGTGGAATTGGTCAAAAGCCGCAGTTT
TGATGCAACAATTGCT
■■Homology search results ■■ -
sp_hit_id Q63870
Definition sp|Q63870|CO7A1_MOUSE Collagen alpha-1(VII) chain OS=Mus musculus
Align length 31
Score (bit) 33.1
E-value 0.73
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915136|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_H10.
(496 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q63870|CO7A1_MOUSE Collagen alpha-1(VII) chain OS=Mus musculu... 33 0.73
sp|Q5XIA0|DZI1L_RAT Zinc finger protein DZIP1L OS=Rattus norvegi... 32 1.2
sp|P98180|TFE2_MESAU Transcription factor E2-alpha OS=Mesocricet... 32 1.6
sp|Q9JI03|CO5A1_RAT Collagen alpha-1(V) chain OS=Rattus norvegic... 32 1.6
sp|O88207|CO5A1_MOUSE Collagen alpha-1(V) chain OS=Mus musculus ... 32 1.6
sp|P20908|CO5A1_HUMAN Collagen alpha-1(V) chain OS=Homo sapiens ... 32 1.6
sp|Q60467|CO5A1_CRILO Collagen alpha-1(V) chain OS=Cricetulus lo... 32 1.6
sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subs... 32 2.1
sp|P13941|CO3A1_RAT Collagen alpha-1(III) chain OS=Rattus norveg... 32 2.1
sp|P08121|CO3A1_MOUSE Collagen alpha-1(III) chain OS=Mus musculu... 32 2.1
sp|Q10163|RSMB_SCHPO Small nuclear ribonucleoprotein-associated ... 31 2.8
sp|Q29442|CO4A4_BOVIN Collagen alpha-4(IV) chain (Fragment) OS=B... 31 2.8
sp|P02461|CO3A1_HUMAN Collagen alpha-1(III) chain OS=Homo sapien... 31 2.8
sp|P21677|TFE2_RAT Transcription factor E2-alpha OS=Rattus norve... 31 3.6
sp|P15806|TFE2_MOUSE Transcription factor E2-alpha OS=Mus muscul... 31 3.6
sp|Q641Z8|PEF1_RAT Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1 31 3.6
sp|P04258|CO3A1_BOVIN Collagen alpha-1(III) chain OS=Bos taurus ... 31 3.6
sp|Q9Y3S1|WNK2_HUMAN Serine/threonine-protein kinase WNK2 OS=Hom... 30 4.7
sp|P55053|FABP5_RAT Fatty acid-binding protein, epidermal OS=Rat... 30 4.7
sp|P32017|CO9A3_CHICK Collagen alpha-3(IX) chain OS=Gallus gallu... 30 4.7
sp|Q8CFE5|BTBD7_MOUSE BTB/POZ domain-containing protein 7 OS=Mus... 30 4.7
sp|Q8J140|MCA1_EMENI Metacaspase-1 OS=Emericella nidulans GN=cas... 30 6.1
sp|Q02388|CO7A1_HUMAN Collagen alpha-1(VII) chain OS=Homo sapien... 30 6.1
sp|P55787|CO4A4_RABIT Collagen alpha-4(IV) chain (Fragment) OS=O... 30 6.1
sp|P53420|CO4A4_HUMAN Collagen alpha-4(IV) chain OS=Homo sapiens... 30 6.1
sp|P02463|CO4A1_MOUSE Collagen alpha-1(IV) chain OS=Mus musculus... 30 6.1
sp|Q6C5Y8|VAC8_YARLI Vacuolar protein 8 OS=Yarrowia lipolytica G... 30 7.9
sp|Q96EV2|RBM33_HUMAN RNA-binding protein 33 OS=Homo sapiens GN=... 30 8.0
sp|Q2J728|IF2_FRASC Translation initiation factor IF-2 OS=Franki... 30 8.0
sp|P39061|COIA1_MOUSE Collagen alpha-1(XVIII) chain OS=Mus muscu... 30 8.0

>sp|Q63870|CO7A1_MOUSE Collagen alpha-1(VII) chain OS=Mus musculus
GN=Col7a1 PE=2 SV=3
Length = 2944

Score = 33.1 bits (74), Expect = 0.73
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +2

Query: 110 GHNFAGAQGRPSTPLPPQYRGPTADPQYRGP 202
G F G +G P PP RGP DP RGP
Sbjct: 1358 GPGFPGKKGDPGPSGPPGSRGPVGDPGPRGP 1388


>sp|Q5XIA0|DZI1L_RAT Zinc finger protein DZIP1L OS=Rattus norvegicus
GN=Dzip1l PE=2 SV=1
Length = 776

Score = 32.3 bits (72), Expect = 1.2
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2

Query: 89 PSPSTPYGHNFAG-AQGRPSTPLP-PQYRGPTADPQYRGP 202
PS STP GH+ G + STP+P P+ GP++ P GP
Sbjct: 571 PSTSTPRGHSSHGPGLTQVSTPIPRPRVHGPSSTPVSPGP 610


>sp|P98180|TFE2_MESAU Transcription factor E2-alpha OS=Mesocricetus
auratus GN=TCF3 PE=3 SV=1
Length = 649

Score = 32.0 bits (71), Expect = 1.6
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2

Query: 56 YSPRQNFGHVLPSPSTPYGHNFAGAQGRPSTPLPPQYRGPTA-DPQYRG 199
YSP + + PSPSTP G QG P T P+ P+A P Y G
Sbjct: 336 YSPDHSSNNFSPSPSTPVG----SPQGLPGTSQWPRAGAPSALSPTYDG 380


>sp|Q9JI03|CO5A1_RAT Collagen alpha-1(V) chain OS=Rattus norvegicus
GN=Col5a1 PE=1 SV=1
Length = 1840

Score = 32.0 bits (71), Expect = 1.6
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +2

Query: 53 GYSPRQNFGHVLPSPSTPYGHNFAGAQGRPSTPLPPQYRGPTADPQYRGP 202
GY RQ + P P + G +G P P P RGPT RGP
Sbjct: 876 GYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGP 925


>sp|O88207|CO5A1_MOUSE Collagen alpha-1(V) chain OS=Mus musculus
GN=Col5a1 PE=2 SV=2
Length = 1838

Score = 32.0 bits (71), Expect = 1.6
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +2

Query: 53 GYSPRQNFGHVLPSPSTPYGHNFAGAQGRPSTPLPPQYRGPTADPQYRGP 202
GY RQ + P P + G +G P P P RGPT RGP
Sbjct: 874 GYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGP 923


>sp|P20908|CO5A1_HUMAN Collagen alpha-1(V) chain OS=Homo sapiens
GN=COL5A1 PE=1 SV=3
Length = 1838

Score = 32.0 bits (71), Expect = 1.6
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +2

Query: 53 GYSPRQNFGHVLPSPSTPYGHNFAGAQGRPSTPLPPQYRGPTADPQYRGP 202
GY RQ + P P + G +G P P P RGPT RGP
Sbjct: 874 GYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGP 923


>sp|Q60467|CO5A1_CRILO Collagen alpha-1(V) chain OS=Cricetulus
longicaudatus GN=COL5A1 PE=2 SV=1
Length = 1840

Score = 32.0 bits (71), Expect = 1.6
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +2

Query: 53 GYSPRQNFGHVLPSPSTPYGHNFAGAQGRPSTPLPPQYRGPTADPQYRGP 202
GY RQ + P P + G +G P P P RGPT RGP
Sbjct: 876 GYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGP 925


>sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subsp.
japonica GN=FH12 PE=3 SV=3
Length = 1669

Score = 31.6 bits (70), Expect = 2.1
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = +2

Query: 53 GYSPRQNFGHVLPSPSTPYGHNFAGA----QGRPSTPLPPQY-RGPTADPQYRG 199
G P G V P P P GH G G P+ P+PP GP P RG
Sbjct: 1172 GTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRG 1225


>sp|P13941|CO3A1_RAT Collagen alpha-1(III) chain OS=Rattus
norvegicus GN=Col3a1 PE=2 SV=3
Length = 1463

Score = 31.6 bits (70), Expect = 2.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2

Query: 89 PSPSTPYGH-NFAGAQGRPSTPLPPQYRGPTADPQYRGP 202
P P+ P G G+ G P +P P Y+GP +P GP
Sbjct: 172 PGPAGPPGPPGPPGSSGHPGSPGSPGYQGPPGEPGQAGP 210


>sp|P08121|CO3A1_MOUSE Collagen alpha-1(III) chain OS=Mus musculus
GN=Col3a1 PE=2 SV=4
Length = 1464

Score = 31.6 bits (70), Expect = 2.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2

Query: 89 PSPSTPYGH-NFAGAQGRPSTPLPPQYRGPTADPQYRGP 202
P P+ P G G+ G P +P P Y+GP +P GP
Sbjct: 172 PGPAGPPGPPGPPGSSGHPGSPGSPGYQGPPGEPGQAGP 210


tr_hit_id B6HF15
Definition tr|B6HF15|B6HF15_PENCH Pc20g09120 protein OS=Penicillium chrysogenum Wisconsin 54-1255
Align length 49
Score (bit) 38.5
E-value 0.18
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915136|Adiantum capillus-veneris mRNA, clone:
YMU001_000066_H10.
(496 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6HF15|B6HF15_PENCH Pc20g09120 protein OS=Penicillium chrysog... 39 0.18
tr|B2HNB7|B2HNB7_MYCMM Proline and glycine rich transmembrane pr... 38 0.30
tr|Q5SDR1|Q5SDR1_MYCMR Putative membrane protein OS=Mycobacteriu... 35 1.5
tr|Q9LYP6|Q9LYP6_ARATH Embryo-specific protein 3 (ATS3) OS=Arabi... 35 2.0
tr|Q94K23|Q94K23_ARATH Embryo-specific protein 3; ATS3 (Embryo-s... 35 2.0
tr|Q2V394|Q2V394_ARATH Uncharacterized protein At5g07190.2 OS=Ar... 35 2.0
tr|O81271|O81271_ARATH Embryo-specific protein 3 OS=Arabidopsis ... 35 2.0
tr|A0PPG2|A0PPG2_MYCUA Proline and glycine rich transmembrane pr... 35 2.6
tr|Q9TV72|Q9TV72_BOVIN Collagen type XVIII (Fragment) OS=Bos tau... 34 3.4
tr|Q2PBM9|Q2PBM9_DANRE Short form of collagen XVIII alpha 1 chai... 34 4.4
tr|Q2PBM8|Q2PBM8_DANRE Intermediate form of collagen XVIII alpha... 34 4.4
tr|Q2PBM7|Q2PBM7_DANRE Long form of collagen XVIII alpha 1 chain... 34 4.4
tr|B0S8G5|B0S8G5_DANRE Col18a1 protein OS=Danio rerio GN=col18a1... 34 4.4
tr|B0S8G4|B0S8G4_DANRE Collagen type XVIII alpha 1 OS=Danio reri... 34 4.4
tr|B0S8G3|B0S8G3_DANRE Collagen type XVIII alpha 1 OS=Danio reri... 34 4.4
tr|A8E654|A8E654_BOVIN COL18A1 protein OS=Bos taurus GN=COL18A1 ... 34 4.4
tr|A4FV05|A4FV05_BOVIN COL18A1 protein OS=Bos taurus GN=COL18A1 ... 34 4.4
tr|Q5K8G5|Q5K8G5_CRYNE Putative uncharacterized protein OS=Crypt... 34 4.4
tr|Q55MA7|Q55MA7_CRYNE Putative uncharacterized protein OS=Crypt... 34 4.4
tr|A5KZ45|A5KZ45_9GAMM Putative uncharacterized protein OS=Vibri... 33 5.6
tr|Q2Q1J8|Q2Q1J8_9NEOP NADH-ubiquinone oxidoreductase chain 6 OS... 33 5.7
tr|B6LUR1|B6LUR1_BRAFL Putative uncharacterized protein (Fragmen... 33 5.7
tr|A8XGN4|A8XGN4_CAEBR CBR-PSA-1 protein OS=Caenorhabditis brigg... 33 5.7
tr|B8JMA9|B8JMA9_DANRE WD repeat domain 33 (Fragment) OS=Danio r... 33 7.5
tr|B6LB26|B6LB26_BRAFL Putative uncharacterized protein OS=Branc... 33 7.5
tr|Q0C9R0|Q0C9R0_ASPTN Predicted protein OS=Aspergillus terreus ... 33 7.5
tr|B2WCE8|B2WCE8_PYRTR Predicted protein OS=Pyrenophora tritici-... 33 7.5
tr|B2VLF2|B2VLF2_PODAN Predicted CDS Pa_5_5940 OS=Podospora anse... 33 7.5
tr|A1CR72|A1CR72_ASPCL Putative uncharacterized protein OS=Asper... 33 7.5
tr|Q6DE50|Q6DE50_XENLA Col9a3-prov protein OS=Xenopus laevis GN=... 33 9.8

>tr|B6HF15|B6HF15_PENCH Pc20g09120 protein OS=Penicillium
chrysogenum Wisconsin 54-1255 GN=Pc20g09120 PE=4 SV=1
Length = 611

Score = 38.5 bits (88), Expect = 0.18
Identities = 21/49 (42%), Positives = 22/49 (44%)
Frame = +2

Query: 56 YSPRQNFGHVLPSPSTPYGHNFAGAQGRPSTPLPPQYRGPTADPQYRGP 202
Y Q G + P P PYGHN G G P PP A PQY GP
Sbjct: 75 YPAVQGQGTMYPMPMAPYGHNPGGMYGMPYPVYPPY-----AIPQYPGP 118


>tr|B2HNB7|B2HNB7_MYCMM Proline and glycine rich transmembrane
protein OS=Mycobacterium marinum (strain ATCC BAA-535 /
M) GN=MMAR_2166 PE=4 SV=1
Length = 377

Score = 37.7 bits (86), Expect = 0.30
Identities = 20/50 (40%), Positives = 22/50 (44%)
Frame = +2

Query: 53 GYSPRQNFGHVLPSPSTPYGHNFAGAQGRPSTPLPPQYRGPTADPQYRGP 202
GY P N+G P P YG AG G + P PP Y P P Y P
Sbjct: 23 GYPPPPNYGTPPPPPPPGYGAPPAGPPGYGAPPPPPGYGTPPPPPGYGTP 72


>tr|Q5SDR1|Q5SDR1_MYCMR Putative membrane protein OS=Mycobacterium
marinum GN=melA PE=4 SV=1
Length = 377

Score = 35.4 bits (80), Expect = 1.5
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = +2

Query: 53 GYSPRQNFGHVLPSPSTPYGHNFAGAQGRPSTPLPPQYRGPTADPQYRGP 202
GY P +G P P YG AG G + P PP Y P P Y P
Sbjct: 23 GYPPPPKYGTPPPPPPPGYGAPPAGPPGYGAPPPPPGYGTPPPPPGYGTP 72


>tr|Q9LYP6|Q9LYP6_ARATH Embryo-specific protein 3 (ATS3)
OS=Arabidopsis thaliana GN=T28J14_130 PE=4 SV=1
Length = 213

Score = 35.0 bits (79), Expect = 2.0
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2

Query: 59 SPRQNFGHVLPSPSTPYGHNFAGAQGRPSTP-LPPQYRGPTADPQ 190
S + +F +P +T YGHN GRPS+P LPP + P P+
Sbjct: 127 SVKFDFSKSVPQLNTWYGHNNCNTTGRPSSPDLPPPHFPPEFPPE 171


>tr|Q94K23|Q94K23_ARATH Embryo-specific protein 3; ATS3
(Embryo-specific protein 3) (ATS3) OS=Arabidopsis
thaliana GN=T28J14_130 PE=2 SV=1
Length = 213

Score = 35.0 bits (79), Expect = 2.0
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2

Query: 59 SPRQNFGHVLPSPSTPYGHNFAGAQGRPSTP-LPPQYRGPTADPQ 190
S + +F +P +T YGHN GRPS+P LPP + P P+
Sbjct: 127 SVKFDFSKSVPQLNTWYGHNNCNTTGRPSSPDLPPPHFPPEFPPE 171


>tr|Q2V394|Q2V394_ARATH Uncharacterized protein At5g07190.2
OS=Arabidopsis thaliana GN=At5g07190 PE=4 SV=1
Length = 185

Score = 35.0 bits (79), Expect = 2.0
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2

Query: 59 SPRQNFGHVLPSPSTPYGHNFAGAQGRPSTP-LPPQYRGPTADPQ 190
S + +F +P +T YGHN GRPS+P LPP + P P+
Sbjct: 99 SVKFDFSKSVPQLNTWYGHNNCNTTGRPSSPDLPPPHFPPEFPPE 143


>tr|O81271|O81271_ARATH Embryo-specific protein 3 OS=Arabidopsis
thaliana GN=ATS3 PE=4 SV=1
Length = 213

Score = 35.0 bits (79), Expect = 2.0
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2

Query: 59 SPRQNFGHVLPSPSTPYGHNFAGAQGRPSTP-LPPQYRGPTADPQ 190
S + +F +P +T YGHN GRPS+P LPP + P P+
Sbjct: 127 SVKFDFSKSVPQLNTWYGHNNCNTTGRPSSPDLPPPHFPPEFPPE 171


>tr|A0PPG2|A0PPG2_MYCUA Proline and glycine rich transmembrane
protein OS=Mycobacterium ulcerans (strain Agy99)
GN=MUL_1750 PE=4 SV=1
Length = 368

Score = 34.7 bits (78), Expect = 2.6
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +2

Query: 53 GYSPRQNFGHVLPSPSTPYGHNFAGAQGRPSTPLPPQYRGPTADP 187
GY P N+G P P YG AG G + P PP Y P P
Sbjct: 23 GYPPPPNYGTPPPPPPPGYGAPPAGPPGYGAPPPPPGYGTPPPPP 67


>tr|Q9TV72|Q9TV72_BOVIN Collagen type XVIII (Fragment) OS=Bos taurus
PE=2 SV=1
Length = 99

Score = 34.3 bits (77), Expect = 3.4
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2

Query: 89 PSPSTPYGHNFAGAQGRPSTPLPPQYRGPTADPQYRGP 202
P+P P G + G QG P P PP GP P + GP
Sbjct: 4 PAPQGPPGIGYEGPQGPPGPPGPP---GPPGPPSFPGP 38


>tr|Q2PBM9|Q2PBM9_DANRE Short form of collagen XVIII alpha 1 chain
OS=Danio rerio GN=col18a1 PE=2 SV=1
Length = 1100

Score = 33.9 bits (76), Expect = 4.4
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +2

Query: 89 PSPSTPYGHNFAGAQGRPSTPLPPQYRGPTADPQYRGP 202
P P P G G GRP P PP GP P GP
Sbjct: 697 PGPQGPPGTPGVGYDGRPGNPGPPGPPGPPGSPSLPGP 734