BP915142
Clone id YMU001_000067_A05
Library
Length 579
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000067_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CAAACAAAAATTATGAGTTAGTAAGCCCTAGGCAAAACAGTGTGCCAGTTCTCGCAGACG
ACAACCCAACTTTCTATAGATATCTAAGGGCTTACTGTTCAAGGTCCATGGTATCATGCT
CTCTTCATAGGATCATGCACCAAGTGTGAAGCCCAAAGATTTCTTCAAACGATGATCTAA
TCCCCTTACTTTTGTGATGAAACTCTCTCCTCAAGCCGGCGTATTGCATCACCGACTGCA
TCATGATCTGAAATACTCTCTTGTTGCTCATGCTCAGCATCTGGCTCGTCTGTTACCACA
AATTTATCAACAGTAGACTGAAGCACACCTAGAGGTATTCCAAATGTTACACCAATTATT
GAACCTAACAAAGCTGATCGCAATCGCCATTTTATAGAACCAGGCAGCATTAAGCCACCA
GTGGCCGCTGTCACGCCTCCAGCTGCCGCAACATTGAGATAGTCACGTGTGTTGCGTCTA
AGTGCCATATACTGTTCAGTGGCACAATATAAACCGGTAAATACTCCAAGTTTAGCACCC
CCCATGACAGTCCCTCGAGCTACCCTTAAAACCTTCTCC
■■Homology search results ■■ -
sp_hit_id P72752
Definition sp|P72752|Y2009_SYNY3 Thylakoid membrane protein ssl2009 OS=Synechocystis sp. (strain PCC 6803)
Align length 61
Score (bit) 31.2
E-value 3.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915142|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_A05.
(579 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P72752|Y2009_SYNY3 Thylakoid membrane protein ssl2009 OS=Syne... 31 3.9
sp|Q8R307|VPS18_MOUSE Vacuolar protein sorting-associated protei... 31 3.9
sp|Q9P253|VPS18_HUMAN Vacuolar protein sorting-associated protei... 31 3.9
sp|Q7VFN1|NHAA1_HELHP Na(+)/H(+) antiporter nhaA 1 OS=Helicobact... 30 6.7
sp|Q8KD63|HSLU_CHLTE ATP-dependent hsl protease ATP-binding subu... 30 6.7
sp|Q8BUY5|CC001_MOUSE Transmembrane protein C3orf1 homolog OS=Mu... 30 6.7

>sp|P72752|Y2009_SYNY3 Thylakoid membrane protein ssl2009
OS=Synechocystis sp. (strain PCC 6803) GN=ssl2009 PE=4
SV=1
Length = 99

Score = 31.2 bits (69), Expect = 3.9
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -2

Query: 371 LLGSIIGVTFGIPLGVLQSTVDKFVVTDEPDAEHEQQESISDHDA---VGDAIRRLEERV 201
LLG++IG G+ G+L S + T PD E E + + D+ + A RRLE+++
Sbjct: 12 LLGTVIG---GVVGGILGSVLANRAATQSPDREKLDTEGVGNLDSEENIELARRRLEDKI 68

Query: 200 S 198
+
Sbjct: 69 A 69


>sp|Q8R307|VPS18_MOUSE Vacuolar protein sorting-associated protein
18 homolog OS=Mus musculus GN=Vps18 PE=1 SV=2
Length = 973

Score = 31.2 bits (69), Expect = 3.9
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2

Query: 212 QAGVLHHRLHHDLKYSLVAHAQH 280
QAG HR+H+DLKY+L A+H
Sbjct: 685 QAGASPHRVHYDLKYALRLCAEH 707


>sp|Q9P253|VPS18_HUMAN Vacuolar protein sorting-associated protein
18 homolog OS=Homo sapiens GN=VPS18 PE=1 SV=2
Length = 973

Score = 31.2 bits (69), Expect = 3.9
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2

Query: 212 QAGVLHHRLHHDLKYSLVAHAQH 280
QAG HR+H+DLKY+L A+H
Sbjct: 685 QAGASPHRVHYDLKYALRLCAEH 707


>sp|Q7VFN1|NHAA1_HELHP Na(+)/H(+) antiporter nhaA 1 OS=Helicobacter
hepaticus GN=nhaA1 PE=3 SV=2
Length = 503

Score = 30.4 bits (67), Expect = 6.7
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2

Query: 407 LPGSIKWRLRSALLGSIIGVTFGIPLGVL 321
L G+I L S +LG+I+G+ G P+GVL
Sbjct: 371 LEGNIDISLNSVMLGTILGLVVGKPVGVL 399


>sp|Q8KD63|HSLU_CHLTE ATP-dependent hsl protease ATP-binding subunit
hslU OS=Chlorobium tepidum GN=hslU PE=3 SV=1
Length = 491

Score = 30.4 bits (67), Expect = 6.7
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -2

Query: 386 RLRSALLGSIIGVTFGIPLGVLQSTVDKFVVTDEPDAEHEQQESISDHD 240
RL + L + + FGIP V+ T+D+ +V D+ + + ++D D
Sbjct: 437 RLHTILTNLLEELMFGIPEMVMDGTIDRNIVIDDNQVREKLGKLVADRD 485


>sp|Q8BUY5|CC001_MOUSE Transmembrane protein C3orf1 homolog OS=Mus
musculus PE=2 SV=1
Length = 285

Score = 30.4 bits (67), Expect = 6.7
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = -2

Query: 383 LRSALLGSIIGVTFGIPLGVLQSTVDKFVVTDEPDAEHEQQESISDHDAVGDAIRRLEER 204
+R + GSIIG G P+G L ++K+ + E E Q+E + H+ +RLEE
Sbjct: 185 VRGLVAGSIIGALLGAPMGSLLMALEKY--SGETVQERRQKEWKALHE------QRLEEW 236

Query: 203 VSS 195
SS
Sbjct: 237 RSS 239


tr_hit_id A9T6F5
Definition tr|A9T6F5|A9T6F5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 132
Score (bit) 79.0
E-value 2.0e-13
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP915142|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_A05.
(579 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9T6F5|A9T6F5_PHYPA Predicted protein OS=Physcomitrella paten... 79 2e-13
tr|A7PCX7|A7PCX7_VITVI Chromosome chr17 scaffold_12, whole genom... 78 4e-13
tr|B7FJT8|B7FJT8_MEDTR Putative uncharacterized protein OS=Medic... 75 3e-12
tr|Q84K84|Q84K84_ARATH Putative uncharacterized protein At5g6300... 74 8e-12
tr|B6T3A5|B6T3A5_MAIZE Putative uncharacterized protein OS=Zea m... 65 4e-09
tr|Q5NBF6|Q5NBF6_ORYSJ Putative uncharacterized protein P0693B08... 64 8e-09
tr|B8AC97|B8AC97_ORYSI Putative uncharacterized protein OS=Oryza... 64 8e-09
tr|A2ZRN4|A2ZRN4_ORYSJ Putative uncharacterized protein OS=Oryza... 64 8e-09
tr|Q9FM52|Q9FM52_ARATH Similarity to unknown protein OS=Arabidop... 57 6e-07
tr|Q00TI9|Q00TI9_OSTTA [S] KOG4608 Uncharacterized conserved pro... 43 0.011
tr|A4S920|A4S920_OSTLU Predicted protein OS=Ostreococcus lucimar... 43 0.011

>tr|A9T6F5|A9T6F5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_168337 PE=4 SV=1
Length = 354

Score = 79.0 bits (193), Expect = 2e-13
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Frame = -2

Query: 575 KVLRVARGTVMGGAKLGVFTGLYCATEQYMALRRNTRDYLNXXXXXXXXXXXXGLMLPGS 396
KVLR+ARGTV+GGAKLG F L+ + +A+ R D LN L LPGS
Sbjct: 80 KVLRIARGTVLGGAKLGAFVALFSGIQHGLAVHRGNHDALNTVAAGGVTGGTFSLTLPGS 139

Query: 395 IKWRLRSALLGSIIGVTFGIPLGVLQSTVDKFVVTDEPDAEHE--------QQESISDHD 240
+ R+ SA +G+++G +PLG+LQS ++ + + E QQ +
Sbjct: 140 LLTRISSAAVGTLLGGFLALPLGLLQSNLEAELKPVQEQEAREPQLIDGGIQQLKYKEGV 199

Query: 239 AVGDAIRRLEER 204
V IRRLE R
Sbjct: 200 GVDAVIRRLESR 211


>tr|A7PCX7|A7PCX7_VITVI Chromosome chr17 scaffold_12, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00016053001
PE=4 SV=1
Length = 169

Score = 77.8 bits (190), Expect = 4e-13
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Frame = -2

Query: 578 EKVLRVARGTVMGGAKLGVFTGLYCATEQYMALRRNTRDYLNXXXXXXXXXXXXGLMLPG 399
++ +RV RG+++GG +LG+FT + + + A +R D N GL++PG
Sbjct: 42 KRFIRVTRGSIVGGVRLGMFTAAFYTLQNFFAEKRGVHDVFNIAGAGSLTAATFGLIMPG 101

Query: 398 SIKWRLRSALLGSIIGVTFGIPLG----VLQSTVDKFVVTDEPDAEHEQQESISDHDAVG 231
SI+WR R+ LLGS++G G PLG L T ++ + PD++ Q VG
Sbjct: 102 SIRWRARNVLLGSVLGAALGFPLGWAHLKLLETANEGRLAAYPDSDQIGQAK----GGVG 157

Query: 230 DAIRRLEERVS 198
AI RLE +++
Sbjct: 158 AAIDRLEGKLN 168


>tr|B7FJT8|B7FJT8_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 203

Score = 74.7 bits (182), Expect = 3e-12
Identities = 41/129 (31%), Positives = 67/129 (51%)
Frame = -2

Query: 578 EKVLRVARGTVMGGAKLGVFTGLYCATEQYMALRRNTRDYLNXXXXXXXXXXXXGLMLPG 399
++ +RV RG ++GG +LG+FT + + +A +R D N GL++PG
Sbjct: 78 KRFIRVTRGALVGGVRLGMFTAAFYNIQNLLAEKRGVHDVFNVVGAGSATASAFGLIMPG 137

Query: 398 SIKWRLRSALLGSIIGVTFGIPLGVLQSTVDKFVVTDEPDAEHEQQESISDHDAVGDAIR 219
S +WR R+ LGS++G F PLG + + + + +E A H Q + V AI
Sbjct: 138 SFRWRARNMALGSVLGAAFCFPLGWIHLKMVE-IANEENLAAHSDQREVK--GGVSAAIE 194

Query: 218 RLEERVSSQ 192
RLEE ++ +
Sbjct: 195 RLEENLNKK 203


>tr|Q84K84|Q84K84_ARATH Putative uncharacterized protein At5g63000
OS=Arabidopsis thaliana GN=At5g63000 PE=2 SV=1
Length = 201

Score = 73.6 bits (179), Expect = 8e-12
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Frame = -2

Query: 578 EKVLRVARGTVMGGAKLGVFTGLYCATEQYMALRRNTRDYLNXXXXXXXXXXXXGLMLPG 399
++ +RV RG+++GG +LG+FT + + + ++A R D N GL++PG
Sbjct: 77 KRFIRVTRGSLIGGMRLGMFTASFFSLQNFLAETRGVHDVFNVVGAGSATAAVFGLIMPG 136

Query: 398 SIKWRLRSALLGSIIGVTFGIPLGVLQ-STVDKFVVTDEPDAEHEQQESISDHDAVGDAI 222
S+ WR R+ LLGS++G T PLG +Q + K + D H + + VG AI
Sbjct: 137 SLAWRARNVLLGSVLGATVCFPLGWVQLKLMKKANEGNNVDTGHHGEVT----SGVGAAI 192

Query: 221 RRLEERV 201
RLE+++
Sbjct: 193 ERLEQQL 199


>tr|B6T3A5|B6T3A5_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 229

Score = 64.7 bits (156), Expect = 4e-09
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Frame = -2

Query: 578 EKVLRVARGTVMGGAKLGVFTGLYCATEQYMALRRNTRDYLNXXXXXXXXXXXXGLMLPG 399
++ +RVA+G+++GG +LG+FT + + + R D N GL+LPG
Sbjct: 100 KRFIRVAKGSLVGGVRLGMFTATFFGIQNLLIDTRGVHDVFNIAAAGSATAAAFGLILPG 159

Query: 398 SIKWRLRSALLGSIIGVTFGIPLGVLQ----STVDKFVVTDEPDAEHEQQESISDHDAVG 231
S+ WR R+ L+GS +G PLG +Q + + +P + + E + VG
Sbjct: 160 SMMWRARNVLVGSALGAGICYPLGWVQLKLAEKANLEIANSKPSS--DLTEGKENQSRVG 217

Query: 230 DAIRRLE 210
AI RLE
Sbjct: 218 AAIERLE 224


>tr|Q5NBF6|Q5NBF6_ORYSJ Putative uncharacterized protein P0693B08.11
(Os01g0271000 protein) (Putative uncharacterized protein
P0667A10.31) OS=Oryza sativa subsp. japonica
GN=P0693B08.11 PE=4 SV=1
Length = 223

Score = 63.5 bits (153), Expect = 8e-09
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Frame = -2

Query: 578 EKVLRVARGTVMGGAKLGVFTGLYCATEQYMALRRNTRDYLNXXXXXXXXXXXXGLMLPG 399
++ +RVA+G+++GG +LG+FT + + + +R D N GL+LPG
Sbjct: 95 KRFIRVAKGSLVGGVRLGMFTATFFGIQNLLIEKRGVHDVFNIAGAGSATAAAFGLILPG 154

Query: 398 SIKWRLRSALLGSIIGVTFGIPLGVLQ-STVDKFVVTDEPDAEHEQQESISDHDAVGDAI 222
S WR R+ L+GS +G PLG +Q +K + + E + VG AI
Sbjct: 155 SPMWRARNVLVGSALGAGVCFPLGWIQLKLAEKANLEMASSKPTDLVEEQGNQSGVGAAI 214

Query: 221 RRL 213
RL
Sbjct: 215 ERL 217


>tr|B8AC97|B8AC97_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_01342 PE=4 SV=1
Length = 223

Score = 63.5 bits (153), Expect = 8e-09
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Frame = -2

Query: 578 EKVLRVARGTVMGGAKLGVFTGLYCATEQYMALRRNTRDYLNXXXXXXXXXXXXGLMLPG 399
++ +RVA+G+++GG +LG+FT + + + +R D N GL+LPG
Sbjct: 95 KRFIRVAKGSLVGGVRLGMFTATFFGIQNLLIEKRGVHDVFNIAGAGSATAAAFGLILPG 154

Query: 398 SIKWRLRSALLGSIIGVTFGIPLGVLQ-STVDKFVVTDEPDAEHEQQESISDHDAVGDAI 222
S WR R+ L+GS +G PLG +Q +K + + E + VG AI
Sbjct: 155 SPMWRARNVLVGSALGAGVCFPLGWIQLKLAEKANLEMASSKPTDLVEEQGNQSGVGAAI 214

Query: 221 RRL 213
RL
Sbjct: 215 ERL 217


>tr|A2ZRN4|A2ZRN4_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_001206 PE=4 SV=1
Length = 235

Score = 63.5 bits (153), Expect = 8e-09
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Frame = -2

Query: 578 EKVLRVARGTVMGGAKLGVFTGLYCATEQYMALRRNTRDYLNXXXXXXXXXXXXGLMLPG 399
++ +RVA+G+++GG +LG+FT + + + +R D N GL+LPG
Sbjct: 107 KRFIRVAKGSLVGGVRLGMFTATFFGIQNLLIEKRGVHDVFNIAGAGSATAAAFGLILPG 166

Query: 398 SIKWRLRSALLGSIIGVTFGIPLGVLQ-STVDKFVVTDEPDAEHEQQESISDHDAVGDAI 222
S WR R+ L+GS +G PLG +Q +K + + E + VG AI
Sbjct: 167 SPMWRARNVLVGSALGAGVCFPLGWIQLKLAEKANLEMASSKPTDLVEEQGNQSGVGAAI 226

Query: 221 RRL 213
RL
Sbjct: 227 ERL 229


>tr|Q9FM52|Q9FM52_ARATH Similarity to unknown protein OS=Arabidopsis
thaliana PE=4 SV=1
Length = 263

Score = 57.4 bits (137), Expect = 6e-07
Identities = 30/87 (34%), Positives = 49/87 (56%)
Frame = -2

Query: 578 EKVLRVARGTVMGGAKLGVFTGLYCATEQYMALRRNTRDYLNXXXXXXXXXXXXGLMLPG 399
++ +RV RG+++GG +LG+FT + + + ++A R D N GL+
Sbjct: 109 KRFIRVTRGSLIGGMRLGMFTASFFSLQNFLAETRGVHDVFNVVGAGSATAAVFGLI--R 166

Query: 398 SIKWRLRSALLGSIIGVTFGIPLGVLQ 318
S+ WR R+ LLGS++G T PLG +Q
Sbjct: 167 SLAWRARNVLLGSVLGATVCFPLGWVQ 193


>tr|Q00TI9|Q00TI9_OSTTA [S] KOG4608 Uncharacterized conserved
protein OS=Ostreococcus tauri GN=Ot17g01000 PE=4 SV=1
Length = 211

Score = 43.1 bits (100), Expect = 0.011
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = -2

Query: 566 RVARGTVMGGAKLGVFTGLYCATEQYMALRRNTRDYLNXXXXXXXXXXXXGLMLPGSIKW 387
R T + G +LG F ++ AT + R RD N G+ +PG +
Sbjct: 68 RAISDTTLHGVRLGSFVSVFSATRLALESTREIRDMWNVVGAGVVTSSLTGMAIPGPLSV 127

Query: 386 RLRSALLGSIIGVTFGIPLGVLQSTVDKFV 297
RLR A LG +G +PLG +++ +
Sbjct: 128 RLRGAALGVAVGGAATLPLGYCLQELERLL 157