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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915153
Clone id YMU001_000067_B05
Library
Length 590
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000067_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TAGCCTTCGTAGTCAGCATGGACTGCGAAATGAATTTAGCATTGGCACTTCAAGCCTGTG
GCACAGGCTATGAGTCATTGTGGCAATGGCTTATCATCAAAATGCAAACCATATGCACAT
AGACCCTTGTGGCAAGGTCACGATTGTCCCTCGTTCAGAAAATGCAGTCAAAGCATTTAT
CGAGCTTAAAGGGTAAATGGAATGAAGAATGTACAGGGAGTGGGATCCTTGACACGAACA
TCGACAGCAAGTGTAGATTGTCCAGTAGGGCATGGGAACCCGAATGGCAAACAAGTTTGG
ACGGCATTATCAACTCAAGTATTCACAGGTAGGAAAGAAAAGCAACACAATTCAGCGGCC
TAGGCCTGGAAACCTTTGTCGTCATAACAGTGGAGCTAAGTGGAGCTCACCAGAATTCCA
GAGGAAGCCCCATGAGAAATCAGAACATCAGTTTGCGCCTTGGATGGAGGGCGTGTGGGG
AGTACTCCACCCTCATGGTTGGGAATGGAAGGACTGGATTACAGAGCCACTTGAGAGGAA
AACGAATCAACAGGTACAAGGATGCTACCATCAAAATGTATCATCATCAA
■■Homology search results ■■ -
sp_hit_id P92485
Definition sp|P92485|NU5M_EQUAS NADH-ubiquinone oxidoreductase chain 5 OS=Equus asinus
Align length 97
Score (bit) 33.5
E-value 0.81
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915153|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_B05.
         (590 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P92485|NU5M_EQUAS NADH-ubiquinone oxidoreductase chain 5 OS=E...    33   0.81 
sp|A1BER1|AROK_CHLPD Shikimate kinase OS=Chlorobium phaeobactero...    31   5.3  
sp|O03205|NU5M_CERSI NADH-ubiquinone oxidoreductase chain 5 OS=C...    30   6.9  
sp|P48656|NU5M_HORSE NADH-ubiquinone oxidoreductase chain 5 OS=E...    30   9.0  
sp|P15173|MYOG_HUMAN Myogenin OS=Homo sapiens GN=MYOG PE=2 SV=2        30   9.0  
sp|Q5QWQ5|HIS6_IDILO Imidazole glycerol phosphate synthase subun...    30   9.0  

>sp|P92485|NU5M_EQUAS NADH-ubiquinone oxidoreductase chain 5
           OS=Equus asinus GN=MT-ND5 PE=3 SV=1
          Length = 606

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 28/97 (28%), Positives = 44/97 (45%)
 Frame = -2

Query: 448 MF*FLMGLPLEFW*APLSSTVMTTKVSRPRPLNCVAFLSYL*ILELIMPSKLVCHSGSHA 269
           MF  LM   L     P+ S+++ T  +   P +    +SY  I  LI P+ +  HSG   
Sbjct: 3   MFSSLMLASLSVLTLPIMSSILNTHKNSTYPHHVKNIISYAFITSLI-PTMMFIHSGQET 61

Query: 268 LLDNLHLLSMFVSRIPLPVHSSFHLPFKLDKCFDCIF 158
           ++ N H +++   ++         L FKLD  F  IF
Sbjct: 62  IISNWHWMTIQTLKL--------SLSFKLD-YFSMIF 89


>sp|A1BER1|AROK_CHLPD Shikimate kinase OS=Chlorobium
           phaeobacteroides (strain DSM 266) GN=aroK PE=3 SV=1
          Length = 190

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -3

Query: 189 LSSINALTAFSERGTIVTLPQGSMCIWFAF***AIATMTHSLCHRLEVPMLNS 31
           L S    T   E+GT+V L  GS             T+T  LCH+ + P+L S
Sbjct: 85  LESNECYTLIKEKGTLVYLKSGS------------GTLTKRLCHKTDRPLLKS 125


>sp|O03205|NU5M_CERSI NADH-ubiquinone oxidoreductase chain 5
           OS=Ceratotherium simum GN=MT-ND5 PE=3 SV=1
          Length = 606

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 28/97 (28%), Positives = 42/97 (43%)
 Frame = -2

Query: 448 MF*FLMGLPLEFW*APLSSTVMTTKVSRPRPLNCVAFLSYL*ILELIMPSKLVCHSGSHA 269
           MF  LM   L     P+ +T + T  +   P      +SY  I  LI P+ +  HSG   
Sbjct: 3   MFPSLMLTSLLMLTLPIITTTINTHKNSTYPYYVKNIISYAFITSLI-PTMMFIHSGQEM 61

Query: 268 LLDNLHLLSMFVSRIPLPVHSSFHLPFKLDKCFDCIF 158
           ++ N H +++   ++         L FKLD  F  IF
Sbjct: 62  IISNWHWMTIQTLKL--------SLSFKLD-YFSMIF 89


>sp|P48656|NU5M_HORSE NADH-ubiquinone oxidoreductase chain 5
           OS=Equus caballus GN=MT-ND5 PE=3 SV=1
          Length = 604

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 28/97 (28%), Positives = 43/97 (44%)
 Frame = -2

Query: 448 MF*FLMGLPLEFW*APLSSTVMTTKVSRPRPLNCVAFLSYL*ILELIMPSKLVCHSGSHA 269
           MF  LM + L     P+  ++  T  +   P +    +SY  I  LI P+ +  HSG   
Sbjct: 1   MFSSLMLVSLLVLTLPIMLSIFNTYKNSTFPHHVKNTISYAFITSLI-PTMMFIHSGQET 59

Query: 268 LLDNLHLLSMFVSRIPLPVHSSFHLPFKLDKCFDCIF 158
           ++ N H ++M   ++         L FKLD  F  IF
Sbjct: 60  IISNWHWMTMQTLKL--------SLSFKLD-YFSMIF 87


>sp|P15173|MYOG_HUMAN Myogenin OS=Homo sapiens GN=MYOG PE=2 SV=2
          Length = 224

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = +3

Query: 129 VARSRLSLVQKMQSKHLSSLKGKWNE-ECTGSGILDTNIDSKCRLSSRAWEPEWQTSLDG 305
           + RS +  ++++Q+  LSSL  +  +    G G     + S+C   S +  PEW ++L+ 
Sbjct: 121 ILRSAIQYIERLQAL-LSSLNQEERDLRYRGGGGPQPGVPSECSSHSASCSPEWGSALEF 179

Query: 306 IINSSIHR*ERKATQFSGLGLETFVV--ITVE 395
             N   H      T    L   T +V  ITVE
Sbjct: 180 SANPGDHLLTADPTDAHNLHSLTSIVDSITVE 211


>sp|Q5QWQ5|HIS6_IDILO Imidazole glycerol phosphate synthase subunit
           hisF OS=Idiomarina loihiensis GN=hisF PE=3 SV=1
          Length = 265

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 416 FQRKPHEKSEHQFAPWMEGVWGVLHPHGWEWKDWITEPLERKTNQQVQGCYHQN 577
           +  +  E   HQF     G     H   W+ KDW+ E + R   + V  C +Q+
Sbjct: 133 YNEQSGEYEVHQFT----GDESKSHKSAWQTKDWLQEVISRGAGEIVLNCMNQD 182
tr_hit_id Q3IHA6
Definition tr|Q3IHA6|Q3IHA6_PSEHT Putative uncharacterized protein OS=Pseudoalteromonas haloplanktis (strain TAC 125)
Align length 86
Score (bit) 35.4
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915153|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_B05.
         (590 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3IHA6|Q3IHA6_PSEHT Putative uncharacterized protein OS=Pseud...    35   2.4  
tr|B6LB34|B6LB34_BRAFL Putative uncharacterized protein OS=Branc...    35   3.2  
tr|B6LB29|B6LB29_BRAFL Putative uncharacterized protein (Fragmen...    35   3.2  
tr|Q9AC40|Q9AC40_CAUCR Sensor protein OS=Caulobacter crescentus ...    33   9.2  
tr|Q5LMA6|Q5LMA6_SILPO Hydrolase, haloacid delahogenase-like fam...    33   9.2  
tr|Q3XYJ2|Q3XYJ2_ENTFC YdjC-like protein OS=Enterococcus faecium...    33   9.2  
tr|B8GWY3|B8GWY3_CAUCR PAS-family sensor histidine kinase OS=Cau...    33   9.2  

>tr|Q3IHA6|Q3IHA6_PSEHT Putative uncharacterized protein
           OS=Pseudoalteromonas haloplanktis (strain TAC 125)
           GN=PSHAa1795 PE=4 SV=1
          Length = 668

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
 Frame = +3

Query: 138 SRLSLVQKMQSKHLSSLKGKWNEECT-GSGILDTNIDSKCRLSSRAWEPEWQTSLDGIIN 314
           +RL+ +   +S  LS L    + +CT G   +D NID+K   S      EWQ  +  IIN
Sbjct: 364 ARLASINVEKSLTLSHLLSSLDTKCTIGESTIDANIDNKIVFSVE----EWQKIIQSIIN 419

Query: 315 S-----SIHR*ERKATQFSGLGLETF 377
           S     S+   ++  T+F+    E F
Sbjct: 420 SGEVSFSVQPVKKSNTEFTQCYFEVF 445


>tr|B6LB34|B6LB34_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_68380 PE=4 SV=1
          Length = 2221

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 118 HRPLWQGHDCPSFRKCSQ-SIYRA*RVNGMKNVQGVGSLTRTSTASVDCPVGHGNPNGKQ 294
           +RP+ Q   CP+       S+Y +  +        +   T +  +S+ C    G PNG+ 
Sbjct: 55  NRPICQRSSCPALPVVQHGSMYGSMTIGSTMTFSCLDGYTLSGPSSITCT---GAPNGQG 111

Query: 295 VWTALSTQVFTGRKEKQHNSA 357
           VW+A S      RKEK  +++
Sbjct: 112 VWSAQSPTCTVTRKEKSASTS 132


>tr|B6LB29|B6LB29_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_68373 PE=4 SV=1
          Length = 629

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +1

Query: 118 HRPLWQGHDCPSFRKCSQ-SIYRA*RVNGMKNVQGVGSLTRTSTASVDCPVGHGNPNGKQ 294
           +RP+ Q   CP+       S+Y +  +        +   T +  +S+ C    G PNG+ 
Sbjct: 170 NRPICQRSSCPALPVVQHGSMYGSMTIGSTMTFSCLDGYTLSGPSSITCT---GAPNGQG 226

Query: 295 VWTALSTQVFTGRKEKQHNSA 357
           VW+A S      RKEK  +++
Sbjct: 227 VWSAQSPTCTVTRKEKSASTS 247


>tr|Q9AC40|Q9AC40_CAUCR Sensor protein OS=Caulobacter crescentus
           GN=CC_0026 PE=4 SV=1
          Length = 900

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 383 HNSGAKWSSPEFQRKPHEKSEHQFAPWMEGVWGVLHP 493
           H   A W SPEF R    + E+Q     EG+W ++HP
Sbjct: 408 HEKQAFWGSPEFHRMMGRRIEYQDV--REGIWPMVHP 442


>tr|Q5LMA6|Q5LMA6_SILPO Hydrolase, haloacid delahogenase-like family
           OS=Silicibacter pomeroyi GN=SPO3657 PE=4 SV=1
          Length = 242

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 455 APWMEGVWGVLHPHGWEWKDWITEPLERKT 544
           AP + G WGV  PHG EW+    +P E +T
Sbjct: 194 APILAGAWGVYVPHGLEWEIEKADPPEDRT 223


>tr|Q3XYJ2|Q3XYJ2_ENTFC YdjC-like protein OS=Enterococcus faecium DO
           GN=EfaeDRAFT_0821 PE=4 SV=1
          Length = 254

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
 Frame = -2

Query: 310 IMPSKLVCHSGSHALLDNLHLLSMFVSRIPLPVHSSF-------HLPFKLDKCFDCIF*T 152
           I+P+ L  H  +H L +N  ++     +  LPV S+F       H+ +  + CFD +  T
Sbjct: 115 IIPTHLDSHHHTHTLDENQEVVVTLAKKYDLPVRSNFERKDEVRHVDY-FEPCFDVVGET 173

Query: 151 RD-NRDLATRVYVHMVCILMI 92
            +  R + T V  ++  +LMI
Sbjct: 174 DEKKRQINTSVEEYLASLLMI 194


>tr|B8GWY3|B8GWY3_CAUCR PAS-family sensor histidine kinase
           OS=Caulobacter crescentus NA1000 GN=CCNA_00026 PE=4 SV=1
          Length = 900

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 383 HNSGAKWSSPEFQRKPHEKSEHQFAPWMEGVWGVLHP 493
           H   A W SPEF R    + E+Q     EG+W ++HP
Sbjct: 408 HEKQAFWGSPEFHRMMGRRIEYQDV--REGIWPMVHP 442