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NBDC - LSDB Archive
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BP915154
Clone id YMU001_000067_B07
Library
Length 539
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000067_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCCGTCTCTCATGAGTCATTGTCCTAGACTCGAAAGTCTCACGCATATTGACTACTATAA
GTGAATGTAAAAAATAACCAAGAGCTGTAACTCTACTCTAGGTACGGTAGCAATGAAATG
CACTCAACTAATCCAAAAGAAGCAACTTGCAACGAGAAAATGCGTCTAAAAAAAAGAGCT
CACCAGCACCTACAATGCTCATGCGAATCCGCGCATAAAATCTCTCGCAATAGTGTAACC
ACACTGTGCTCCACAAATGGCAATGATGCAAATCCCAAATACCAAGTGGACGAGGCTCTT
GTAGAATAAACCAAGCTCCTGTATGGCTATAAAATATGGTTGCAAATCAGTCCCAAAATT
CAGCTCTTAAACAACTGCATAAACAAGTCACAAACGTGTCCCAGATCAGCCTACAACTGA
GACATACATGGACACCTGCAAAGAGAAAACAATGGCTAAAAATTCAGCGCCCAAATAAGC
TCTCAAAGCTGCCTGTAAACTTGTAAACATGTAGCTAAAACCTGCTGAAAAACCTCAAG
■■Homology search results ■■ -
sp_hit_id P98158
Definition sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus
Align length 100
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915154|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_B07.
         (539 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related prot...    32   1.5  
sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related pr...    32   2.0  
sp|Q7TSY8|SGOL2_MOUSE Shugoshin-like 2 OS=Mus musculus GN=Sgol2 ...    32   2.6  
sp|P65559|YFCD_SALTY Uncharacterized Nudix hydrolase yfcD OS=Sal...    31   3.4  
sp|P65560|YFCD_SALTI Uncharacterized Nudix hydrolase yfcD OS=Sal...    31   3.4  
sp|Q6P2B1|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=...    31   4.4  
sp|Q9Y5L0|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=...    31   4.4  
sp|Q59XY0|CWC22_CANAL Pre-mRNA-splicing factor CWC22 OS=Candida ...    30   5.7  
sp|Q63ZY6|NSN5C_HUMAN Putative methyltransferase NSUN5C OS=Homo ...    30   7.5  
sp|Q69Z38|SG269_MOUSE Tyrosine-protein kinase-protein kinase SgK...    30   9.8  
sp|Q9H792|SG269_HUMAN Tyrosine-protein kinase SgK269 OS=Homo sap...    30   9.8  
sp|O74889|SAC31_SCHPO SAC3 family protein 1 OS=Schizosaccharomyc...    30   9.8  
sp|Q96ET8|F18B2_HUMAN Protein FAM18B2 OS=Homo sapiens GN=FAM18B2...    30   9.8  

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2
            OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1
          Length = 4660

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
 Frame = +1

Query: 76   NQEL*LYSRYGSNEMHSTNP-KEATCNEKMRLKKRAHQHLQCSCESAHKISRNSVTT--- 243
            +Q L + + + S +  S NP   A+C+    L  +A +H  C+C S   +S +SV     
Sbjct: 1685 HQPLGITAIHPSRQPPSRNPCASASCSHLCLLSAQAPRHYSCACPSGWNLSDDSVNCVRG 1744

Query: 244  ----LCSTNGN-----DANPKYQVDEALVE*TKLLYGYKI 336
                L S   N       +P+ + ++A+V  + + +GY +
Sbjct: 1745 DQPFLMSVRDNIIFGISLDPEVKSNDAMVPISGIQHGYDV 1784


>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein
            2 OS=Mus musculus GN=Lrp2 PE=1 SV=1
          Length = 4660

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
 Frame = +1

Query: 79   QEL*LYSRYGSNEMHSTNP-KEATCNEKMRLKKRAHQHLQCSCESAHKISRNSVTTLCST 255
            Q L + + + S +  S NP   ATC+    L  +  +H  C+C S   +S +SV  +   
Sbjct: 1686 QPLGIIAIHPSRQPSSPNPCASATCSHLCLLSAQEPRHYSCACPSGWNLSDDSVNCVRGD 1745

Query: 256  N------------GNDANPKYQVDEALVE*TKLLYGYKI 336
                         G   +P+ + ++A+V  + + +GY +
Sbjct: 1746 QPFLISVRENVIFGISLDPEVKSNDAMVPISGIQHGYDV 1784


>sp|Q7TSY8|SGOL2_MOUSE Shugoshin-like 2 OS=Mus musculus GN=Sgol2
           PE=1 SV=1
          Length = 1164

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
 Frame = +1

Query: 148 CNEKMRLKKRAHQHLQCSCESAHKISRNSVTTLCSTNGNDANPKYQVDEALVE*T----- 312
           CN K    K  +Q    +C S H    +SV  L + + +D +PK  + E     +     
Sbjct: 202 CNLKAFPPKEDNQK---TCGSGHLEHTSSVDILPNESHSDQSPKSSLSEMKTAPSPSLRR 258

Query: 313 -KLLYGY----KIWLQISPKIQLLNNCINKSQTCPRSAYN*DIHGHLQRENNG*KFSAQ 474
            KL +G     K  +  +P I  + +  ++  + P S +N +IHGH    +N  + +A+
Sbjct: 259 EKLSHGNVTMRKKCVSSTPDILYVTDLDHQPTSSPGSNWNNEIHGHTNETSNNTQRNAE 317


>sp|P65559|YFCD_SALTY Uncharacterized Nudix hydrolase yfcD
           OS=Salmonella typhimurium GN=yfcD PE=3 SV=1
          Length = 184

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 314 LVYSTRASSTWYLGFASLPFVEHSVVTLLREILCADSHEHCRCW*ALF 171
           L+ S R  +   LG A +PF EH +             +HCR W ALF
Sbjct: 82  LLESARREAEEELGIAGVPFAEHGLFYF--------EDQHCRVWGALF 121


>sp|P65560|YFCD_SALTI Uncharacterized Nudix hydrolase yfcD
           OS=Salmonella typhi GN=yfcD PE=3 SV=1
          Length = 184

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 314 LVYSTRASSTWYLGFASLPFVEHSVVTLLREILCADSHEHCRCW*ALF 171
           L+ S R  +   LG A +PF EH +             +HCR W ALF
Sbjct: 82  LLESARREAEEELGIAGVPFAEHGLFYF--------EDQHCRVWGALF 121


>sp|Q6P2B1|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1
            SV=1
          Length = 923

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 14/67 (20%), Positives = 30/67 (44%)
 Frame = +2

Query: 245  CAPQMAMMQIPNTKWTRLL*NKPSSCMAIKYGCKSVPKFSS*TTA*TSHKRVPDQPTTET 424
            C P   +  +    W  +  ++P+ C  ++   K +PK ++      +HK++ D     T
Sbjct: 844  CLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHKQVT 903

Query: 425  YMDTCKE 445
              + CK+
Sbjct: 904  SAEECKQ 910


>sp|Q9Y5L0|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1
            SV=3
          Length = 923

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 14/67 (20%), Positives = 30/67 (44%)
 Frame = +2

Query: 245  CAPQMAMMQIPNTKWTRLL*NKPSSCMAIKYGCKSVPKFSS*TTA*TSHKRVPDQPTTET 424
            C P   +  +    W  +  ++P+ C  ++   K +PK ++      +HK++ D     T
Sbjct: 844  CLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHKQVT 903

Query: 425  YMDTCKE 445
              + CK+
Sbjct: 904  SAEECKQ 910


>sp|Q59XY0|CWC22_CANAL Pre-mRNA-splicing factor CWC22 OS=Candida
           albicans GN=CWC22 PE=3 SV=1
          Length = 648

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 94  YSRYGSNEMHSTNPKEATCNEKMRLKKRAHQHLQCSCESAHKISRNSVTTLCSTNGNDAN 273
           YSR  S    S NP+      + R K + H H +    S   + R    ++   NGN+ N
Sbjct: 580 YSRSQSRSSRSPNPRG-----RQRFKTKKHNHNESRTPSRENLKRKRSESVTDRNGNNNN 634


>sp|Q63ZY6|NSN5C_HUMAN Putative methyltransferase NSUN5C OS=Homo
           sapiens GN=NSUN5C PE=1 SV=2
          Length = 315

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 141 SNLQRENASKKKSSPAPTMLMRIRA*NLSQ*CNHTVLHKWQ*CKSQIPSGRGSC 302
           ++  +  AS  + +P+P    + RA + S+ C HT LH  +   S +P G+G C
Sbjct: 245 TSASQAKASAPERTPSPAPKRKKRAKSCSR-CLHTALHIAEAPGSLLPGGKGRC 297


>sp|Q69Z38|SG269_MOUSE Tyrosine-protein kinase-protein kinase SgK269
           OS=Mus musculus GN=Sgk269 PE=1 SV=3
          Length = 1735

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +1

Query: 346 ISPKIQLLNNCINKSQTCPRSAYN 417
           ++ K+Q  NNC+N+ Q+ P+ +Y+
Sbjct: 699 VAQKVQEFNNCLNRGQSSPQRSYS 722
tr_hit_id A4VDB8
Definition tr|A4VDB8|A4VDB8_TETTH Phosphatidylinositol 4-kinase OS=Tetrahymena thermophila SB210
Align length 124
Score (bit) 34.7
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915154|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_B07.
         (539 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4VDB8|A4VDB8_TETTH Phosphatidylinositol 4-kinase OS=Tetrahym...    35   3.3  
tr|Q6DCG8|Q6DCG8_XENLA Tnpo3-prov protein OS=Xenopus laevis GN=t...    34   4.3  
tr|Q9YAW3|Q9YAW3_AERPE Acylamino-acid-releasing enzyme OS=Aeropy...    34   4.3  

>tr|A4VDB8|A4VDB8_TETTH Phosphatidylinositol 4-kinase OS=Tetrahymena
            thermophila SB210 GN=TTHERM_00219449 PE=4 SV=1
          Length = 1748

 Score = 34.7 bits (78), Expect = 3.3
 Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
 Frame = +3

Query: 147  LQRENASKKKSSPAPTMLMRIRA*NLSQ*CNHTVLHKWQ*CKSQIPSGRGSCRINQAPVW 326
            L   + S K ++P+P + +  +  + +   NH +  K+Q C S I     S  +N     
Sbjct: 792  LNLNSLSSKDTNPSPKLFITPQKNSFN---NHQI-QKYQPCSSPILLQNASSILN----- 842

Query: 327  L*NMVANQSQNSALKQLHK-----QVTNVSQISLQLRHTWTPAKRKQWLKIQRPNKLSKL 491
              N +  Q++    +Q HK      +T  ++ + +L         K+ ++ +RP   SKL
Sbjct: 843  --NKIKTQNETLVSQQEHKIFLKTVITKFNKFNSKLASIMNKRPVKETVEQKRPTWFSKL 900

Query: 492  PVNL 503
            PVN+
Sbjct: 901  PVNI 904


>tr|Q6DCG8|Q6DCG8_XENLA Tnpo3-prov protein OS=Xenopus laevis GN=tnpo3
            PE=2 SV=1
          Length = 922

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +2

Query: 245  CAPQMAMMQIPNTKWTRLL*NKPSSCMAIKYGCKSVPKFSS*TTA*TSHKRVPDQPTTET 424
            C P   +  +    W  ++ ++P+ C  ++   KS+PK  S      +HK++ D     T
Sbjct: 843  CLPPYTLPDVAEVFWEAMIFDRPTFCRWLESSLKSLPKEISGGAVTVTHKQLTDFHKQVT 902

Query: 425  YMDTCKE 445
              + CK+
Sbjct: 903  SAEECKQ 909


>tr|Q9YAW3|Q9YAW3_AERPE Acylamino-acid-releasing enzyme OS=Aeropyrum
           pernix GN=APE1832 PE=4 SV=1
          Length = 659

 Score = 34.3 bits (77), Expect = 4.3
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
 Frame = -2

Query: 469 R*IFSHCFLF-----AGVHVCLSCRLIWDTFVTCLC-----SCLRAEFWD*FATIFYS-H 323
           R +FSH  +F     +   VCL+C L  +T  T        SCLR  +WD    ++Y  H
Sbjct: 258 RGLFSHYKIFVYDLNSEEFVCLTCDLDLNTLNTVNSDARGPSCLRGMYWDDNGHLYYGVH 317

Query: 322 TGAWFILQEPRPLG 281
                ++ + RPLG
Sbjct: 318 NAGRMVVMKSRPLG 331