| BP915156 |
| Clone id |
YMU001_000067_B09 |
| Library |
YMU01 |
| Length |
512 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000067_B09. |
| Accession |
BP915156 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
GATCAATCAATCATTACTACAGAGCATCATGAAGAGAGTCAGGGAAATAGGGCTATGGCT
TCTATCCCACATTAGTTGGCATGCACGATCTAGGATTTGTTAGAGTGGATGAAGGAGTTC
CAGCTAAGCATAATGGATAGGGGACAACCAAGGGGAGGAAGAGGTAGGCCAAATGTGTGG
AAGTGCTACAACTGCTATGAAGAGGGTCATTAAGTTCCAAATATCCCCATCCTCCTAAGG
AAAGAGGGGGTATATATCCTTTGTTTGGCAAAGGTAGAGGACAAGGATAGTTTAATGGTC
CAAGATAATAGCAAGCTGAAAAATCTATGGATCCAGCTCCACCAAAAAATGAAAAAAGTC
ACTAGGGTCAATATCATCAGTATGGACAAGCATGAGTTGGATTTTTTGGCTAACAAGAGA
GGTCAAGATGTGAAAGAGAAATAGAGCCCGTGAGAGAAACCAGAGCTCACAAGGTAAGGG
GAAGGTATTTGAGGGTAAAGAGAAACTGAAGA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q9R1S4 |
| Definition |
sp|Q9R1S4|XBP1_RAT X-box-binding protein 1 OS=Rattus norvegicus |
| Align length |
55 |
| Score (bit) |
32.7 |
| E-value |
1.0 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915156|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_B09.
(512 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R1S4|XBP1_RAT X-box-binding protein 1 OS=Rattus norvegicus ... 33 1.0
sp|O35426|XBP1_MOUSE X-box-binding protein 1 OS=Mus musculus GN=... 32 1.3
sp|Q2G350|CTAA_NOVAD Heme A synthase OS=Novosphingobium aromatic... 32 1.3
sp|A9IVC8|CTAA_BART1 Heme A synthase OS=Bartonella tribocorum (s... 31 2.9
sp|Q9FF17|ALG6_ARATH Probable dolichyl pyrophosphate Man9GlcNAc2... 31 2.9
sp|Q6G011|CTAA_BARQU Heme A synthase OS=Bartonella quintana GN=c... 31 3.8
sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium ... 30 5.0
sp|Q8G1D1|CTAA_BRUSU Heme A synthase OS=Brucella suis GN=ctaA PE... 30 6.5
sp|B0CLB4|CTAA_BRUSI Heme A synthase OS=Brucella suis (strain AT... 30 6.5
sp|A5VPX0|CTAA_BRUO2 Heme A synthase OS=Brucella ovis (strain AT... 30 6.5
sp|Q8YGI7|CTAA_BRUME Heme A synthase OS=Brucella melitensis GN=c... 30 6.5
sp|A9MAG4|CTAA_BRUC2 Heme A synthase OS=Brucella canis (strain A... 30 6.5
sp|Q57DW5|CTAA_BRUAB Heme A synthase OS=Brucella abortus GN=ctaA... 30 6.5
sp|Q2YNB0|CTAA_BRUA2 Heme A synthase OS=Brucella abortus (strain... 30 6.5
sp|Q6G3L5|CTAA_BARHE Heme A synthase OS=Bartonella henselae GN=c... 30 6.5
sp|Q9M3N0|MATK_SPIOL Maturase K OS=Spinacia oleracea GN=matK PE=... 30 8.5
sp|A6X1W1|CTAA_OCHA4 Heme A synthase OS=Ochrobactrum anthropi (s... 30 8.5
>sp|Q9R1S4|XBP1_RAT X-box-binding protein 1 OS=Rattus norvegicus
GN=Xbp1 PE=2 SV=1
Length = 267
Score = 32.7 bits (73), Expect = 1.0
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = -1
Query: 380 LMILTLVTFFIFWWSWIHRFFSLLLSWTIKLSLSSTFAKQR---IYTPSFLRRMG 225
L IL+L++F+ FW SW FS +L ++ + +S + Q+ Y P FL + G
Sbjct: 191 LQILSLISFWAFWTSWTLSCFSNVLPQSLLIWRNSQRSTQKDLVPYQPPFLCQWG 245
>sp|O35426|XBP1_MOUSE X-box-binding protein 1 OS=Mus musculus
GN=Xbp1 PE=2 SV=2
Length = 267
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = -1
Query: 380 LMILTLVTFFIFWWSWIHRFFSLLLSWTIKLSLSSTFAKQR---IYTPSFLRRMG 225
L IL+L++F+ FW SW FS +L ++ + +S + Q+ Y P FL + G
Sbjct: 191 LQILSLISFWAFWTSWTLSCFSNVLPQSLLVWRNSQRSTQKDLVPYQPPFLCQWG 245
>sp|Q2G350|CTAA_NOVAD Heme A synthase OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=ctaA PE=3 SV=1
Length = 350
Score = 32.3 bits (72), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 371 LTLVTF-FIFWWSWIHRFFSLLLSWTIKLSLSSTFAKQRI 255
+TL T+ FIF+W W+HR + + L+ + K+RI
Sbjct: 86 MTLATYKFIFFWEWVHRLLARTIGLVFAAPLAWFWIKRRI 125
>sp|A9IVC8|CTAA_BART1 Heme A synthase OS=Bartonella tribocorum
(strain CIP 105476 / IBS 506) GN=ctaA PE=3 SV=1
Length = 358
Score = 31.2 bits (69), Expect = 2.9
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 371 LTLVTF-FIFWWSWIHRFFSLLLSWTIKLSLSSTFAKQRI 255
+TL F IFWW W HR L+ L L +A +RI
Sbjct: 90 MTLSAFKVIFWWEWAHRVLGRLVGLVALLGLIWFWATKRI 129
>sp|Q9FF17|ALG6_ARATH Probable dolichyl pyrophosphate Man9GlcNAc2
alpha-1,3-glucosyltransferase OS=Arabidopsis thaliana
GN=At5g38460 PE=2 SV=1
Length = 533
Score = 31.2 bits (69), Expect = 2.9
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = -1
Query: 509 SVSLYPQIPSPYLVSSGFSHGLYFSFTS*PLLLAK---KSNSCLSILM--ILTLVTFFIF 345
S++L + S Y + FSH LL K + + LS++ I +VTF IF
Sbjct: 233 SLALSHKQMSAYFAPAFFSH-----------LLGKCLRRKSPILSVIKLGIAVIVTFVIF 281
Query: 344 WWSWIHRFFSLLL 306
WW ++H L+
Sbjct: 282 WWPYVHSLDDFLM 294
>sp|Q6G011|CTAA_BARQU Heme A synthase OS=Bartonella quintana GN=ctaA
PE=3 SV=1
Length = 358
Score = 30.8 bits (68), Expect = 3.8
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 371 LTLVTF-FIFWWSWIHRFFSLLLSWTIKLSLSSTFAKQRI 255
+TL F IFWW W HR L+ L L +A +RI
Sbjct: 90 MTLNAFKVIFWWEWAHRILGRLVGLLALLGLIWFWATKRI 129
>sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium
discoideum GN=kif4 PE=2 SV=1
Length = 1922
Score = 30.4 bits (67), Expect = 5.0
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 262 CLAKVEDKDSLMVQDNSKLKNLWIQ-LHQKMKKVTRVNIISMDKHELD 402
C ++ +K +LM QDN +L IQ LHQK K I+SM+ + +D
Sbjct: 1550 CKNQLSEKQTLMEQDNIQLNERIIQLLHQKTKHEN--EILSMESNIID 1595
>sp|Q8G1D1|CTAA_BRUSU Heme A synthase OS=Brucella suis GN=ctaA PE=3
SV=1
Length = 358
Score = 30.0 bits (66), Expect = 6.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = -1
Query: 353 FIFWWSWIHRFFSLLLSWTIKLSLSSTFAKQRIYTPSFLRRMGI 222
+IFWW W HR + + + + + L + R+ R +G+
Sbjct: 101 YIFWWEWAHRLLARFVGFLVAVPLGFFWLTGRLKGGLKYRMLGL 144
>sp|B0CLB4|CTAA_BRUSI Heme A synthase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=ctaA PE=3 SV=1
Length = 358
Score = 30.0 bits (66), Expect = 6.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = -1
Query: 353 FIFWWSWIHRFFSLLLSWTIKLSLSSTFAKQRIYTPSFLRRMGI 222
+IFWW W HR + + + + + L + R+ R +G+
Sbjct: 101 YIFWWEWAHRLLARFVGFLVAVPLGFFWLTGRLKGGLKYRMLGL 144
>sp|A5VPX0|CTAA_BRUO2 Heme A synthase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=ctaA PE=3 SV=2
Length = 358
Score = 30.0 bits (66), Expect = 6.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = -1
Query: 353 FIFWWSWIHRFFSLLLSWTIKLSLSSTFAKQRIYTPSFLRRMGI 222
+IFWW W HR + + + + + L + R+ R +G+
Sbjct: 101 YIFWWEWAHRLLARFVGFLVAVPLGFFWLTGRLKGGLKYRMLGL 144
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
Q54XX2 |
| Definition |
tr|Q54XX2|Q54XX2_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum |
| Align length |
58 |
| Score (bit) |
36.2 |
| E-value |
0.96 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP915156|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_B09.
(512 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|Q54XX2|Q54XX2_DICDI Putative uncharacterized protein OS=Dicty... 36 0.96
tr|A9BFV0|A9BFV0_PETMO Glycoside hydrolase family 38 OS=Petrotog... 35 1.6
tr|Q2QP15|Q2QP15_ORYSJ Retrotransposon protein, putative, Ty1-co... 34 3.7
tr|Q8H023|Q8H023_ORYSJ Putative retrovirus-related pol polyprote... 33 6.2
tr|Q7XSZ1|Q7XSZ1_ORYSJ OSJNBb0056F09.5 protein OS=Oryza sativa s... 33 6.2
tr|Q7XEC4|Q7XEC4_ORYSJ Retrotransposon protein, putative, Ty1-co... 33 6.2
tr|Q2QVJ2|Q2QVJ2_ORYSJ Retrotransposon protein, putative, Ty1-co... 33 6.2
tr|Q1YTU7|Q1YTU7_9GAMM Putative uncharacterized protein OS=gamma... 33 8.1
tr|Q23U26|Q23U26_TETTH Putative uncharacterized protein OS=Tetra... 33 8.1
>tr|Q54XX2|Q54XX2_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0205522 PE=4 SV=1
Length = 469
Score = 36.2 bits (82), Expect = 0.96
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -1
Query: 416 LLAKKSNSCLSILMILTLVTFFIFW----WSWIHRFFSLLLSWTIKLSLSSTFAKQRI 255
+L K N+ L +M + L F+ W WSW+H F S L+S+ + + + + + Q I
Sbjct: 31 ILKKLPNANLKHIMNICLGVFYCTWSLGEWSWLHSFISSLISYGLLMVIPNRYKPQLI 88
>tr|A9BFV0|A9BFV0_PETMO Glycoside hydrolase family 38 OS=Petrotoga
mobilis (strain DSM 10674 / SJ95) GN=Pmob_0722 PE=4 SV=1
Length = 1022
Score = 35.4 bits (80), Expect = 1.6
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 199 EEGH*VPNIPILLRKE-GVYILCLAKVEDKDSLMVQ----DNSKLKNLWIQLHQKMKKVT 363
EEG+ N + + V I + K ED DS++++ S+ K + I+ + +KKV
Sbjct: 928 EEGNLPDNFSFIKVNDFDVVIETIKKAEDDDSILIRLFEDKGSRKKEVEIEFFRSLKKVV 987
Query: 364 RVNIISMDKHELDFLANK 417
N+I ++ E+ F NK
Sbjct: 988 ECNLIEEEEKEIAFKDNK 1005
>tr|Q2QP15|Q2QP15_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g36020 PE=4 SV=1
Length = 425
Score = 34.3 bits (77), Expect = 3.7
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +1
Query: 181 KCYNCYEEGH*VPNIPILLRKEGVYILCLAKVEDKDS----LMVQDNSKLKNLWI 333
+CY C+E GH N P+L +++G A+ +D DS + N K W+
Sbjct: 223 RCYKCHEFGHIRRNCPLLKKRKGGIASLAARGDDSDSSSHETLTVSNEKSGEAWM 277
>tr|Q8H023|Q8H023_ORYSJ Putative retrovirus-related pol polyprotein
(Retrotransposon protein, putative, Ty1-copia subclass)
OS=Oryza sativa subsp. japonica GN=OSJNBa0050H14.7 PE=4
SV=1
Length = 556
Score = 33.5 bits (75), Expect = 6.2
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 181 KCYNCYEEGH*VPNIPILLRKEGVYILCLAKVEDKDS----LMVQDNSKLKNLWI 333
+CY C+E GH N P+L +++G A+ ++ DS ++ N K W+
Sbjct: 354 RCYKCHEFGHIRRNCPLLKKRKGGIASLAARGDNSDSSSHEILTVSNEKSGEAWM 408
>tr|Q7XSZ1|Q7XSZ1_ORYSJ OSJNBb0056F09.5 protein OS=Oryza sativa
subsp. japonica GN=OSJNBb0056F09.5 PE=4 SV=2
Length = 371
Score = 33.5 bits (75), Expect = 6.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +1
Query: 181 KCYNCYEEGH*VPNIPIL-LRKEGVYILCLAKVEDKDS----LMVQDNSKLKNLWI 333
+CY C+E GH N P+L RK+G+ L A+ +D DS ++ N K W+
Sbjct: 243 RCYKCHEFGHIRRNCPLLKKRKDGIASLA-ARGDDSDSSSHEILTVSNEKSGEAWM 297
>tr|Q7XEC4|Q7XEC4_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os10g29210 PE=4 SV=2
Length = 415
Score = 33.5 bits (75), Expect = 6.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 181 KCYNCYEEGH*VPNIPILLRKEGVYILCLAKVEDKDS 291
+CY C+E GH N P+L +++G A+ +D DS
Sbjct: 223 RCYKCHEFGHIRRNCPLLKKRKGGIASLAARGDDSDS 259
>tr|Q2QVJ2|Q2QVJ2_ORYSJ Retrotransposon protein, putative, Ty1-copia
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os12g12620 PE=4 SV=1
Length = 424
Score = 33.5 bits (75), Expect = 6.2
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = +1
Query: 181 KCYNCYEEGH*VPNIPIL-LRKEGVYILCLAKVEDKDS----LMVQDNSKLKNLWI 333
+CY C+E GH N P+L RK+G+ L A+ +D DS ++ N K W+
Sbjct: 222 RCYKCHEFGHIRRNCPLLKKRKDGIASLA-ARGDDSDSSSHEILTVSNEKSGEAWM 276
>tr|Q1YTU7|Q1YTU7_9GAMM Putative uncharacterized protein OS=gamma
proteobacterium HTCC2207 GN=GB2207_01262 PE=4 SV=1
Length = 117
Score = 33.1 bits (74), Expect = 8.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 395 SCLSILMILTLVTFFIFWWSWIHRFFSLLLSWTIKLSLSSTF 270
S LS L+ L+L F + WW W+ F+ L + + LSL + F
Sbjct: 25 SILSYLITLSLGVFSVAWWPWLPSFWVSLGLFIVLLSLCAFF 66
>tr|Q23U26|Q23U26_TETTH Putative uncharacterized protein
OS=Tetrahymena thermophila SB210 GN=TTHERM_01197020 PE=4
SV=1
Length = 1251
Score = 33.1 bits (74), Expect = 8.1
Identities = 20/73 (27%), Positives = 40/73 (54%)
Frame = +1
Query: 208 H*VPNIPILLRKEGVYILCLAKVEDKDSLMVQDNSKLKNLWIQLHQKMKKVTRVNIISMD 387
H + IPI L+K+ + L K +++ Q NS +++ Q + ++ K T+ + +
Sbjct: 70 HNIKYIPIKLKKDEQLLQQLLKGSEENKNNEQKNSLKSDIFQQTNSEVFKQTQRSTSNHK 129
Query: 388 KHELDFLANKRGQ 426
K+EL + NK+G+
Sbjct: 130 KYELKRVVNKQGE 142
|