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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915160
Clone id YMU001_000067_C02
Library
Length 547
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000067_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCTAGATTGGGCATATACATTAATTTGACAAAACCAGATGGCACACATACGATACCATCA
AGGGGAAAGGCTTAACACTATTTTTGTTTGGCTCAAGGGTTAAAGGAGAAAGGTCCACAC
GATTTAGCATGCCTTGCATTATAGGCACACATCATCCTCCAAATGAAAAGAAGTTGCCGT
TCTGGACTTCCGAGTCCCAAATACTCCATTGCCTTCAATATCTCAGTAAGGGACATACCT
TCGTTCAACAATCAATTGATTGAGCATCTACCTTCTCAATTTTATTGCACAATTTCCATC
AAATATTTGATTGGAGTGTGTCATATTCTACCTCATTCAGGTCCAAGCACACTCTTCTCG
AGCACCAAATCCAAAGATTGTCCCACTTACATCCTTCAATTCCCCAAATACACCCCGGCT
ACCTTCTCCGGAGTCCATGATTCTCATATGCATCCCTCACATCTTCGCTCCGTGAAGCGT
ACCGGTGCAATGGGTACACGAGACCACCATTGTCTTAACCTACTGATATAACATACAGAA
TTCTCCT
■■Homology search results ■■ -
sp_hit_id Q8DRN4
Definition sp|Q8DRN4|RECO_STRR6 DNA repair protein recO OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Align length 44
Score (bit) 32.0
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915160|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_C02.
         (547 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8DRN4|RECO_STRR6 DNA repair protein recO OS=Streptococcus pn...    32   2.0  
sp|Q04N32|RECO_STRP2 DNA repair protein recO OS=Streptococcus pn...    32   2.0  
sp|Q62178|SEM4A_MOUSE Semaphorin-4A OS=Mus musculus GN=Sema4a PE...    31   3.4  
sp|Q8T2Q0|ZDHC6_DICDI Putative ZDHHC-type palmitoyltransferase 6...    31   3.4  
sp|Q22910|HM31_CAEEL Homeobox protein ceh-31 OS=Caenorhabditis e...    31   4.5  
sp|Q9H3S1|SEM4A_HUMAN Semaphorin-4A OS=Homo sapiens GN=SEMA4A PE...    30   9.9  
sp|Q97TA7|RECO_STRPN DNA repair protein recO OS=Streptococcus pn...    30   9.9  

>sp|Q8DRN4|RECO_STRR6 DNA repair protein recO OS=Streptococcus
           pneumoniae (strain ATCC BAA-255 / R6) GN=recO PE=3 SV=1
          Length = 256

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 279 ILLHNFHQIFDWSVSYSTSFRSKHTLLEHQIQRLSHLHPSIPQI 410
           +  H   Q FD+S  Y T    +H    H+ +R  HL+P+IP +
Sbjct: 154 VFCHRVGQAFDFSFKYGTCLCPEHY---HEDERRCHLNPNIPYL 194


>sp|Q04N32|RECO_STRP2 DNA repair protein recO OS=Streptococcus
           pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=recO
           PE=3 SV=1
          Length = 256

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 279 ILLHNFHQIFDWSVSYSTSFRSKHTLLEHQIQRLSHLHPSIPQI 410
           +  H   Q FD+S  Y T    +H    H+ +R  HL+P+IP +
Sbjct: 154 VFCHRVGQAFDFSFKYGTCLCPEHY---HEDERRCHLNPNIPYL 194


>sp|Q62178|SEM4A_MOUSE Semaphorin-4A OS=Mus musculus GN=Sema4a PE=1
           SV=1
          Length = 760

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 188 SPERQLLFIWRMMCAYNARHAKSCGPFSFNP 96
           S E Q     R++ +YNA H  +CG F+F+P
Sbjct: 119 SNETQCFNFIRVLVSYNATHLYACGTFAFSP 149


>sp|Q8T2Q0|ZDHC6_DICDI Putative ZDHHC-type palmitoyltransferase 6
           OS=Dictyostelium discoideum GN=DDB_G0275149 PE=2 SV=1
          Length = 698

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
 Frame = +1

Query: 202 YSIAFNISVRDI-PSFNNQLIEHL------PSQFYCTISIKYLIGVCHILPHSGPSTLFS 360
           ++++F   VR + P+F N ++ H        S +YC   + +          S P T+ S
Sbjct: 324 FTVSFVYYVRYVVPAFPNIILTHTITLFVYSSYYYCAFKLFF----------SDPGTVSS 373

Query: 361 STKSKDCPTYI------LQFPKYTPATFSGVHDSHMHPSHLRSVKRTGAMGTRDHHC 513
           ST S+D   +I      L+ P+        + +  +   H R+ KR   +   DHHC
Sbjct: 374 STTSQDSKDFINAVEKELEIPEVCSTC---LINKPIRAKHCRTCKR--CVARFDHHC 425


>sp|Q22910|HM31_CAEEL Homeobox protein ceh-31 OS=Caenorhabditis
           elegans GN=ceh-31 PE=2 SV=2
          Length = 260

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 332 LIQVQAHSSRAPNPKIVPLTSFNSPNTPRLPSPES 436
           L+   +HS+  P+P    + S  SP++PR+ SP +
Sbjct: 44  LLDPTSHSTNEPDPSPTSINSSESPSSPRIGSPNT 78


>sp|Q9H3S1|SEM4A_HUMAN Semaphorin-4A OS=Homo sapiens GN=SEMA4A PE=1
           SV=2
          Length = 761

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 188 SPERQLLFIWRMMCAYNARHAKSCGPFSFNP 96
           S E Q     R++ +YN  H  +CG F+F+P
Sbjct: 119 SNETQCFNFIRVLVSYNVTHLYTCGTFAFSP 149


>sp|Q97TA7|RECO_STRPN DNA repair protein recO OS=Streptococcus
           pneumoniae GN=recO PE=3 SV=1
          Length = 256

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 279 ILLHNFHQIFDWSVSYSTSFRSKHTLLEHQIQRLSHLHPSIPQI 410
           +  H   Q FD+S  Y      +H    H+ +R  HL+P+IP +
Sbjct: 154 VFCHRVGQAFDFSFKYGACLCPEHY---HEDKRRCHLNPNIPYL 194
tr_hit_id Q9HF12
Definition tr|Q9HF12|Q9HF12_9EURO Vacuolar serine protease OS=Penicillium oxalicum
Align length 49
Score (bit) 33.9
E-value 5.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915160|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_C02.
         (547 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9HF12|Q9HF12_9EURO Vacuolar serine protease OS=Penicillium o...    34   5.8  
tr|Q4UBD0|Q4UBD0_THEAN Chl1 protein, putative OS=Theileria annul...    34   5.8  
tr|A8DSW4|A8DSW4_HAPBU Hoxa2b OS=Haplochromis burtoni GN=hoxa2b ...    33   9.8  

>tr|Q9HF12|Q9HF12_9EURO Vacuolar serine protease OS=Penicillium
           oxalicum PE=2 SV=1
          Length = 503

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 334 HSGPSTLFSSTKSKDCP-TYILQFPKYTPATFSGVHDSHMHPSHLRSVK 477
           H+G + L SST +K+ P +YI+ F K+  A+ +  H S +   H  +V+
Sbjct: 25  HNGAAPLISSTSAKEIPDSYIVVFKKHVGASAASAHHSWVQDIHSDNVR 73


>tr|Q4UBD0|Q4UBD0_THEAN Chl1 protein, putative OS=Theileria annulata
           GN=TA18790 PE=4 SV=1
          Length = 829

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +3

Query: 24  FDKTRWHTYDTIKGKGLTLFLFGSRVKGERSTRF-SMPCIIGTHHPPNEKKLPFWTSESQ 200
           FD++ +  +++  G G TL +  S +   ++ R  +M C +G   P N++K+P W SE  
Sbjct: 33  FDESSFGLFESPTGSGKTLSILCSALTWIKNNRSKTMMCDLGLE-PSNDEKVPKWVSEIS 91

Query: 201 ILH 209
           + H
Sbjct: 92  LNH 94


>tr|A8DSW4|A8DSW4_HAPBU Hoxa2b OS=Haplochromis burtoni GN=hoxa2b
           PE=3 SV=1
          Length = 362

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 347 AHSSRAPNPKIVPLTSFNSPNTPRLPSPESMILICIPHI 463
           AH+  + +P + PLTS N  N    P+P +++ IC+  I
Sbjct: 263 AHNGESQSPTVTPLTS-NEKNLKHFPNPSAIVPICVSTI 300