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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915161
Clone id YMU001_000067_C03
Library
Length 341
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000067_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATCAACTTAAGAACAATCGTGCATCGCTTATAGGTATTGTTTTTGTATACATTAATCAAA
GAAAATAAGAAAAATTTCAACCATCATGAAAGTACATTTCAGATATACAGAGACTTGAAC
CAATTGATACTTTAATGGTTCCCCTCCAGCTTTTTTGTTCTTCCGATCTTGTCACCAGGG
CCCAGACTAATCCACTTTTTGGTATGGAAGTTTGCAAGATGTTATGACCGGACCTTTGGC
CTTAACAGCAATGCCTAAGGCCTCTCCAATGCTATTACACTTGCACTGAAGACCTGGTCG
GATCACGTCTCCATAAACAGCCATTTCAATTACATCCAGCT
■■Homology search results ■■ -
sp_hit_id O08590
Definition sp|O08590|AOC3_RAT Membrane primary amine oxidase OS=Rattus norvegicus
Align length 40
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915161|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_C03.
         (341 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O08590|AOC3_RAT Membrane primary amine oxidase OS=Rattus norv...    30   4.9  

>sp|O08590|AOC3_RAT Membrane primary amine oxidase OS=Rattus
           norvegicus GN=Aoc3 PE=1 SV=4
          Length = 763

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 259 LRHCC*GQRSGHNILQTSIPKSGLVWALVTRSEEQKSWRG 140
           L HCC  +R GHN+L+ +    GL      +S ++ +W G
Sbjct: 195 LHHCCFYKRQGHNLLKMTTAPRGL------QSGDRATWFG 228
tr_hit_id A9RNN2
Definition tr|A9RNN2|A9RNN2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 69.3
E-value 9.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915161|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_C03.
         (341 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RNN2|A9RNN2_PHYPA Predicted protein OS=Physcomitrella paten...    69   9e-11
tr|A9NR05|A9NR05_PICSI Putative uncharacterized protein OS=Picea...    61   2e-08
tr|A9NLU3|A9NLU3_PICSI Putative uncharacterized protein OS=Picea...    61   2e-08
tr|B8BG96|B8BG96_ORYSI Putative uncharacterized protein OS=Oryza...    59   1e-07
tr|A9P7V3|A9P7V3_POPTR Putative uncharacterized protein OS=Popul...    58   3e-07
tr|Q8LMG0|Q8LMG0_ORYSJ Os10g0335200 protein OS=Oryza sativa subs...    57   5e-07
tr|A7PDH7|A7PDH7_VITVI Chromosome chr17 scaffold_12, whole genom...    55   2e-06
tr|Q9M9T9|Q9M9T9_ARATH F6A14.21 protein (Putative uncharacterize...    53   9e-06
tr|B6U703|B6U703_MAIZE Endonuclease/ nucleic acid binding protei...    53   9e-06
tr|B6TQA0|B6TQA0_MAIZE Putative uncharacterized protein OS=Zea m...    53   9e-06

>tr|A9RNN2|A9RNN2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_204249 PE=4 SV=1
          Length = 180

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 32/47 (68%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
 Frame = -3

Query: 339 LDVIEMAVYGDVIRPGLQCKCNSIGEALGIAV-KAKGPVITSCKLPY 202
           LD+IEM VYG+VIRPGLQCKC S+ E LG A+ K KGP ++SCKLP+
Sbjct: 130 LDLIEMGVYGNVIRPGLQCKCKSVAETLGTALSKQKGPEMSSCKLPH 176


>tr|A9NR05|A9NR05_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 168

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 29/48 (60%), Positives = 40/48 (83%)
 Frame = -3

Query: 339 LDVIEMAVYGDVIRPGLQCKCNSIGEALGIAVKAKGPVITSCKLPYQK 196
           LDVIEMAVYG+V+RPGLQC+C S+ E LG  +K+K P + +C+LPY++
Sbjct: 122 LDVIEMAVYGNVMRPGLQCRCKSVAEMLG-QLKSKSPQM-ACELPYKE 167


>tr|A9NLU3|A9NLU3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 166

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 29/48 (60%), Positives = 40/48 (83%)
 Frame = -3

Query: 339 LDVIEMAVYGDVIRPGLQCKCNSIGEALGIAVKAKGPVITSCKLPYQK 196
           LDVIEMAVYG+V+RPGLQC+C S+ E LG  +K+K P + +C+LPY++
Sbjct: 120 LDVIEMAVYGNVMRPGLQCRCKSVAEMLG-QLKSKSPQM-ACELPYKE 165


>tr|B8BG96|B8BG96_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33113 PE=4 SV=1
          Length = 178

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 29/46 (63%), Positives = 36/46 (78%)
 Frame = -3

Query: 339 LDVIEMAVYGDVIRPGLQCKCNSIGEALGIAVKAKGPVITSCKLPY 202
           LDVIEMAVYGDVIRPG QC+C ++ E LG  VK+K   + +C+LPY
Sbjct: 131 LDVIEMAVYGDVIRPGKQCRCRTVAEMLG-KVKSKNQ-MAACELPY 174


>tr|A9P7V3|A9P7V3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 180

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 29/46 (63%), Positives = 36/46 (78%)
 Frame = -3

Query: 339 LDVIEMAVYGDVIRPGLQCKCNSIGEALGIAVKAKGPVITSCKLPY 202
           LD+IEMAVYGDVIRPG QC+C +I E LG  +K+K  V  +CKLP+
Sbjct: 132 LDIIEMAVYGDVIRPGNQCRCRTIAEMLG-QLKSKDRV-AACKLPF 175


>tr|Q8LMG0|Q8LMG0_ORYSJ Os10g0335200 protein OS=Oryza sativa subsp.
           japonica GN=OJ1325D05.10 PE=2 SV=1
          Length = 178

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 28/46 (60%), Positives = 36/46 (78%)
 Frame = -3

Query: 339 LDVIEMAVYGDVIRPGLQCKCNSIGEALGIAVKAKGPVITSCKLPY 202
           LDVIEMAVYGDVIRPG QC+C ++ E LG  VK+K   + +C+LP+
Sbjct: 131 LDVIEMAVYGDVIRPGKQCRCRTVAEMLG-KVKSKNQ-MAACELPH 174


>tr|A7PDH7|A7PDH7_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016286001
           PE=4 SV=1
          Length = 167

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 27/46 (58%), Positives = 34/46 (73%)
 Frame = -3

Query: 339 LDVIEMAVYGDVIRPGLQCKCNSIGEALGIAVKAKGPVITSCKLPY 202
           LD+IEMAVYGDVIRPG QC+C ++ E LG   K K   + +CKLP+
Sbjct: 119 LDIIEMAVYGDVIRPGNQCRCRTVAEMLG-QYKPKDR-MAACKLPF 162


>tr|Q9M9T9|Q9M9T9_ARATH F6A14.21 protein (Putative uncharacterized
           protein At1g18680) (Putative uncharacterized protein
           At1g18680/F6A14_21) OS=Arabidopsis thaliana
           GN=At1g18680/F6A14_21 PE=2 SV=1
          Length = 186

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = -3

Query: 339 LDVIEMAVYGDVIRPGLQCKCNSIGEALGIAVKAKGPVITSCKLP 205
           LDVIEMAVYGDV+RPG +C+C ++ E LG +    G    +C+LP
Sbjct: 143 LDVIEMAVYGDVLRPGKECRCKTVAELLGQSKSKDGK--AACELP 185


>tr|B6U703|B6U703_MAIZE Endonuclease/ nucleic acid binding protein
           OS=Zea mays PE=2 SV=1
          Length = 180

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = -3

Query: 339 LDVIEMAVYGDVIRPGLQCKCNSIGEALGIAVKAKGPVITSCKLP 205
           LD+IEMAVYGDVIRPG QC+C ++ E LG  VK     + +C+LP
Sbjct: 133 LDIIEMAVYGDVIRPGKQCRCRTVAEVLG-QVKPTNR-MAACELP 175


>tr|B6TQA0|B6TQA0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 139

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = -3

Query: 339 LDVIEMAVYGDVIRPGLQCKCNSIGEALGIAVKAKGPVITSCKLP 205
           LD+IEMAVYGDVIRPG QC+C ++ E LG  VK     + +C+LP
Sbjct: 92  LDIIEMAVYGDVIRPGKQCRCRTVAEVLG-QVKPTNR-MAACELP 134