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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP915164
Clone id YMU001_000067_C07
Library
Length 366
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000067_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTTATCCTTCATCACAGGAACCCACCCAAATTTTACTAAATAGGTGCCAGAGCTCTGGC
CAAGTATTCCTTGCCAAAAACCACCCATCGAGATTCCACACAGCAAACATTCAATAATTC
AACTCCATCCAAGAAGAACAGGAGACCATGATAATGTAAAGCCATGTGCCAACTGATGTC
TGCTCTCGGGCCAAGTTCTCTCCACAATAAAGCCCCGGCTCACCTCCACCCATCTACCTT
TCTTTACTGAGCTTCCAACAACATGTTTCTGCCAGTGATTCTGCATTCCTGCTGTATAGT
TACAGCCGGGTATGCTAGTGGCTGCGGCAGTGCCAATATCAGGATTCCAGCAGACCTCTA
CAACCA
■■Homology search results ■■ -
sp_hit_id Q669X6
Definition sp|Q669X6|KDUI_YERPS 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase OS=Yersinia pseudotuberculosis
Align length 79
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915164|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_C07.
         (366 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q669X6|KDUI_YERPS 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    32   1.3  
sp|A4TLE6|KDUI_YERPP 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    32   1.3  
sp|Q1CIE6|KDUI_YERPN 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    32   1.3  
sp|Q8ZFH8|KDUI_YERPE 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    32   1.3  
sp|Q1C713|KDUI_YERPA 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    32   1.3  
sp|A7FHE3|KDUI_YERP3 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    32   1.3  
sp|Q9UVE1|HIS7_ZYGRO Imidazoleglycerol-phosphate dehydratase OS=...    31   1.7  
sp|Q5GH62|XKR9_MOUSE XK-related protein 9 OS=Mus musculus GN=Xkr...    31   2.2  
sp|Q6R3M4|POLI_MOUSE DNA polymerase iota OS=Mus musculus GN=Poli...    30   2.9  
sp|O24509|INVA_PHAVU Acid beta-fructofuranosidase OS=Phaseolus v...    30   2.9  
sp|P29001|INVA_PHAAU Acid beta-fructofuranosidase OS=Phaseolus a...    30   3.8  
sp|Q09744|YB63_SCHPO Uncharacterized FAD-binding protein C12C2.0...    30   4.9  
sp|Q8EMM9|KDUI_OCEIH 4-deoxy-L-threo-5-hexosulose-uronate ketol-...    30   4.9  
sp|P0AA80|GARP_ECOLI Probable galactarate transporter OS=Escheri...    30   4.9  
sp|P0AA81|GARP_ECO57 Probable galactarate transporter OS=Escheri...    30   4.9  
sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophil...    30   4.9  
sp|Q8LPR5|TCP4_ARATH Transcription factor TCP4 OS=Arabidopsis th...    29   6.4  
sp|Q4WM95|FIP1_ASPFU Pre-mRNA polyadenylation factor fip1 OS=Asp...    29   8.4  

>sp|Q669X6|KDUI_YERPS 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pseudotuberculosis GN=kduI
           PE=3 SV=1
          Length = 278

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +2

Query: 20  NPPKFY*IGARALAKYSLPKTTHRDSTQQTFNNSTPSKKNRRP------**CKAMCQL-- 175
           NP KFY   A A   Y   K T  +++ QT  +   S  NRR             CQL  
Sbjct: 122 NPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATS--NRRTINKYIVPDVLPTCQLSM 179

Query: 176 -MSALGPSSLHNKAPAHLH 229
            ++ L P SL N  P H H
Sbjct: 180 GLTKLAPGSLWNTMPCHTH 198


>sp|A4TLE6|KDUI_YERPP 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pestis (strain Pestoides F)
           GN=kduI PE=3 SV=1
          Length = 278

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +2

Query: 20  NPPKFY*IGARALAKYSLPKTTHRDSTQQTFNNSTPSKKNRRP------**CKAMCQL-- 175
           NP KFY   A A   Y   K T  +++ QT  +   S  NRR             CQL  
Sbjct: 122 NPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATS--NRRTINKYIVPDVLPTCQLSM 179

Query: 176 -MSALGPSSLHNKAPAHLH 229
            ++ L P SL N  P H H
Sbjct: 180 GLTKLAPGSLWNTMPCHTH 198


>sp|Q1CIE6|KDUI_YERPN 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pestis bv. Antiqua (strain
           Nepal516) GN=kduI PE=3 SV=1
          Length = 278

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +2

Query: 20  NPPKFY*IGARALAKYSLPKTTHRDSTQQTFNNSTPSKKNRRP------**CKAMCQL-- 175
           NP KFY   A A   Y   K T  +++ QT  +   S  NRR             CQL  
Sbjct: 122 NPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATS--NRRTINKYIVPDVLPTCQLSM 179

Query: 176 -MSALGPSSLHNKAPAHLH 229
            ++ L P SL N  P H H
Sbjct: 180 GLTKLAPGSLWNTMPCHTH 198


>sp|Q8ZFH8|KDUI_YERPE 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pestis GN=kduI PE=3 SV=1
          Length = 278

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +2

Query: 20  NPPKFY*IGARALAKYSLPKTTHRDSTQQTFNNSTPSKKNRRP------**CKAMCQL-- 175
           NP KFY   A A   Y   K T  +++ QT  +   S  NRR             CQL  
Sbjct: 122 NPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATS--NRRTINKYIVPDVLPTCQLSM 179

Query: 176 -MSALGPSSLHNKAPAHLH 229
            ++ L P SL N  P H H
Sbjct: 180 GLTKLAPGSLWNTMPCHTH 198


>sp|Q1C713|KDUI_YERPA 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pestis bv. Antiqua (strain
           Antiqua) GN=kduI PE=3 SV=1
          Length = 278

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +2

Query: 20  NPPKFY*IGARALAKYSLPKTTHRDSTQQTFNNSTPSKKNRRP------**CKAMCQL-- 175
           NP KFY   A A   Y   K T  +++ QT  +   S  NRR             CQL  
Sbjct: 122 NPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATS--NRRTINKYIVPDVLPTCQLSM 179

Query: 176 -MSALGPSSLHNKAPAHLH 229
            ++ L P SL N  P H H
Sbjct: 180 GLTKLAPGSLWNTMPCHTH 198


>sp|A7FHE3|KDUI_YERP3 4-deoxy-L-threo-5-hexosulose-uronate
           ketol-isomerase OS=Yersinia pseudotuberculosis serotype
           O:1b (strain IP 31758) GN=kduI PE=3 SV=1
          Length = 278

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = +2

Query: 20  NPPKFY*IGARALAKYSLPKTTHRDSTQQTFNNSTPSKKNRRP------**CKAMCQL-- 175
           NP KFY   A A   Y   K T  +++ QT  +   S  NRR             CQL  
Sbjct: 122 NPAKFYYNSAPAHTTYPNKKITLAEASPQTLGDDATS--NRRTINKYIVPDVLPTCQLSM 179

Query: 176 -MSALGPSSLHNKAPAHLH 229
            ++ L P SL N  P H H
Sbjct: 180 GLTKLAPGSLWNTMPCHTH 198


>sp|Q9UVE1|HIS7_ZYGRO Imidazoleglycerol-phosphate dehydratase
           OS=Zygosaccharomyces rouxii GN=HIS3 PE=3 SV=1
          Length = 226

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 12/51 (23%)
 Frame = -3

Query: 130 GWS*IIECLL------------CGISMGGFWQGILGQSSGTYLVKFGWVPV 14
           GWS I+EC+             CGI++G  ++  LGQ  G     FG+ P+
Sbjct: 80  GWSLIVECIGDLHIDDHHTTEDCGIALGDAFKQALGQVRGVKRFGFGFAPL 130


>sp|Q5GH62|XKR9_MOUSE XK-related protein 9 OS=Mus musculus GN=Xkr9
           PE=2 SV=1
          Length = 373

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 155 IIMVSCS--SWMELNY*MFAVWNLDGWFLARNTWPELWHLFSKI 30
           +IMVSC   SW  ++Y +    +L    L R  WP+L +LF K+
Sbjct: 167 VIMVSCCAISWSTVDYQIALRKSLPDKNLLRGLWPKLMYLFYKL 210


>sp|Q6R3M4|POLI_MOUSE DNA polymerase iota OS=Mus musculus GN=Poli
           PE=1 SV=1
          Length = 717

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 20/85 (23%), Positives = 36/85 (42%)
 Frame = +3

Query: 18  GTHPNFTK*VPELWPSIPCQKPPIEIPHSKHSIIQLHPRRTGDHDNVKPCAN*CLLSGQV 197
           G  P+  + V   +    C +   + P   H I +L    TG+HD++ P  +       +
Sbjct: 336 GRKPHTVRLVIRRYSDKHCNRESRQCPIPSHVIQKLG---TGNHDSMPPLID-------I 385

Query: 198 LSTIKPRLTSTHLPFFTELPTTCFC 272
           L  +   + +  +PF   L + CFC
Sbjct: 386 LMKLFRNMVNVKMPFHLTLMSVCFC 410


>sp|O24509|INVA_PHAVU Acid beta-fructofuranosidase OS=Phaseolus
           vulgaris PE=2 SV=1
          Length = 651

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 334 GTAAATSIPGCNYTAGMQNHWQKHVVGSSVKKGRWVEVSRG 212
           G   A+++P  + ++   NH Q+H   +S+   +W  VSRG
Sbjct: 41  GRNRASNVPHDHVSSSASNHQQEHQSPTSLPSSKWHAVSRG 81
tr_hit_id A9SSK3
Definition tr|A9SSK3|A9SSK3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 78
Score (bit) 53.5
E-value 5.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP915164|Adiantum capillus-veneris mRNA, clone:
YMU001_000067_C07.
         (366 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SSK3|A9SSK3_PHYPA Predicted protein OS=Physcomitrella paten...    54   5e-06
tr|B2JIF0|B2JIF0_BURP8 Putative uncharacterized protein OS=Burkh...    34   3.2  
tr|A4QZ48|A4QZ48_MAGGR Putative uncharacterized protein OS=Magna...    34   4.2  
tr|A9RSS8|A9RSS8_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   5.5  
tr|Q84QT0|Q84QT0_ORYSJ Os08g0346500 protein OS=Oryza sativa subs...    33   7.1  
tr|A8WR65|A8WR65_CAEBR CBR-SCL-23 protein OS=Caenorhabditis brig...    33   9.3  

>tr|A9SSK3|A9SSK3_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_234038 PE=4 SV=1
          Length = 895

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -3

Query: 364  VVEVCWNPDIGTAA-ATSIPGCNYTAGMQNHWQKHVVGSSVKKGRWVEVSRGFIVERTWP 188
            V EVCW  +      + S PG    +G                G W+EVSRGF+VE TWP
Sbjct: 818  VAEVCWTDNWDPCLESVSSPGLASASGE----------GVPPMGAWLEVSRGFVVEDTWP 867

Query: 187  ESRHQLAHGFTLSWSPVL 134
             S+    HG+ +SWSP L
Sbjct: 868  VSKLYRPHGYVVSWSPSL 885


>tr|B2JIF0|B2JIF0_BURP8 Putative uncharacterized protein
           OS=Burkholderia phymatum (strain DSM 17167 / STM815)
           GN=Bphy_1362 PE=4 SV=1
          Length = 338

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -3

Query: 238 GRWVEVSRGFIVERTWPESRHQLAHGFT 155
           G+W E SRGFIV   WPE  H  A   T
Sbjct: 308 GQWSERSRGFIVPDDWPEQAHAFARQST 335


>tr|A4QZ48|A4QZ48_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_07856 PE=4 SV=1
          Length = 712

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 176 SVGTWLYIIMVSCSSWMELNY*MFAVWNLDGWFLARNTWPELWHLF 39
           +V TW ++++ +C++W  L+     +    G FLAR  W  LW  +
Sbjct: 5   AVATWAFVLLATCAAWNVLSCWRSPLRRYPGPFLAR--WTNLWRFY 48


>tr|A9RSS8|A9RSS8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_118936 PE=4 SV=1
          Length = 665

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 146 VSCSSWMELNY*MFAVWNLDGWFLARNTWPELWHL 42
           V CS+W ELN+  F      GWF  +N WP ++ L
Sbjct: 340 VDCSNWSELNFHKFFTGYEKGWF-DKNGWPVMYKL 373


>tr|Q84QT0|Q84QT0_ORYSJ Os08g0346500 protein OS=Oryza sativa subsp.
           japonica GN=P0410E11.135 PE=4 SV=1
          Length = 307

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 66  IPCQKPPIE-IPHSKHSIIQLHPRRTGDHDNVKPC 167
           +P  + P++  PHSK+S  Q+ P ++  HD+  PC
Sbjct: 204 VPISESPVQGAPHSKNSQSQVEPTKSPSHDDALPC 238


>tr|A8WR65|A8WR65_CAEBR CBR-SCL-23 protein OS=Caenorhabditis
           briggsae GN=Cbr-scl-23 PE=4 SV=2
          Length = 312

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = -3

Query: 361 VEVCWNPDIGTAAATSIPGCNYTAGMQNHWQKHVVGSSVKKGRWVEVSRGFIVERTWPE 185
           V VC     G    TS P   YT G         VGSS  +G +++ + G  VE TW E
Sbjct: 237 VAVCKYYPTGNVFKTSTPTSIYTVGD--------VGSSCSEGTFIDPTSGLCVEATWHE 287